BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0103.0017.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii]                 167   5e-40
ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit be...   157   4e-37
ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit be...   137   6e-31
ref|ZP_08778234.1| ribonucleotide-diphosphate reductase subunit ...   119   1e-25
ref|YP_004086280.1| ribonucleoside-diphosphate reductase [Asticc...   119   1e-25

>emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii]
          Length = 360

 Score =  167 bits (423), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 79/80 (98%), Positives = 80/80 (100%)

Query: 1   VRDESLHCEGIIKLFHEWHRETGAVTRSVRDDIVDVAKTMVKLEENFVDLAFGLGKIEGM 60
           VRDESLHCEGIIKLFHEW+RETGAVTRSVRDDIVDVAKTMVKLEENFVDLAFGLGKIEGM
Sbjct: 212 VRDESLHCEGIIKLFHEWNRETGAVTRSVRDDIVDVAKTMVKLEENFVDLAFGLGKIEGM 271

Query: 61  RPEQIHTYVRYVADWRLTQL 80
           RPEQIHTYVRYVADWRLTQL
Sbjct: 272 RPEQIHTYVRYVADWRLTQL 291


>ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit beta [Bradyrhizobium
           japonicum USDA 110]
 dbj|BAC45271.1| ribonucleoside-diphosphate reductase beta subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 360

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/80 (92%), Positives = 75/80 (93%)

Query: 1   VRDESLHCEGIIKLFHEWHRETGAVTRSVRDDIVDVAKTMVKLEENFVDLAFGLGKIEGM 60
           VRDESLHCEGIIKLFHEWHRETGAVTR VRDDIVDVAKTMVKLEENFV+LAFGLGKIEGM
Sbjct: 212 VRDESLHCEGIIKLFHEWHRETGAVTRPVRDDIVDVAKTMVKLEENFVELAFGLGKIEGM 271

Query: 61  RPEQIHTYVRYVADWRLTQL 80
            PE IH YVRYVADWRL QL
Sbjct: 272 LPEHIHAYVRYVADWRLAQL 291


>ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum
           rubrum ATCC 11170]
 gb|ABC22246.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC
           11170]
 gb|AEO47963.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum
           rubrum F11]
          Length = 358

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 71/80 (88%)

Query: 1   VRDESLHCEGIIKLFHEWHRETGAVTRSVRDDIVDVAKTMVKLEENFVDLAFGLGKIEGM 60
           VRDESLHC+GII+LFHEW+RETGA+T+ VRDDI+DVA TMV LEE FVDLAF LG IEGM
Sbjct: 206 VRDESLHCQGIIRLFHEWNRETGALTKPVRDDILDVATTMVGLEEKFVDLAFELGAIEGM 265

Query: 61  RPEQIHTYVRYVADWRLTQL 80
           R E I +YVRYVADWRLTQL
Sbjct: 266 RAEDIKSYVRYVADWRLTQL 285


>ref|ZP_08778234.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Odyssella thessalonicensis L13]
          Length = 362

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 65/80 (81%)

Query: 1   VRDESLHCEGIIKLFHEWHRETGAVTRSVRDDIVDVAKTMVKLEENFVDLAFGLGKIEGM 60
           VRDESLHCE II+L+HEW +ETG +T SV+DDI+DVAKT+V+LE+ F++LAF LG + GM
Sbjct: 208 VRDESLHCESIIRLYHEWTKETGTLTSSVKDDIIDVAKTIVRLEDKFIELAFALGNVNGM 267

Query: 61  RPEQIHTYVRYVADWRLTQL 80
             E +  YVRY+ DWRL QL
Sbjct: 268 TLEDMKNYVRYICDWRLIQL 287


>ref|YP_004086280.1| ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
           48]
 gb|ADU12129.1| Ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
           48]
          Length = 350

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 67/80 (83%)

Query: 1   VRDESLHCEGIIKLFHEWHRETGAVTRSVRDDIVDVAKTMVKLEENFVDLAFGLGKIEGM 60
           VRDESLHCEGIIKL+H +++ETGAVT++V DDIVD  KT+V LE+ F+DL+F +G +EGM
Sbjct: 200 VRDESLHCEGIIKLYHAFNKETGAVTKAVADDIVDCCKTVVSLEDKFIDLSFEMGPVEGM 259

Query: 61  RPEQIHTYVRYVADWRLTQL 80
            P+ I  Y+RY+ADWRL QL
Sbjct: 260 TPDDIKQYIRYIADWRLRQL 279