BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0103.0010.p         (39 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ57558.1| NrdA protein [Bradyrhizobium elkanii]                  67   9e-10
ref|NP_766647.1| ribonucleotide-diphosphate reductase subunit al...    65   5e-09
ref|YP_426532.1| ribonucleotide-diphosphate reductase subunit al...    54   1e-05
ref|YP_004679355.1| ribonucleotide-diphosphate reductase subunit...    45   0.003
ref|YP_003817120.1| ribonucleoside-diphosphate reductase subunit...    43   0.017

>emb|CAQ57558.1| NrdA protein [Bradyrhizobium elkanii]
          Length = 645

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 1   LSGAISVRNPHLAKLLAAKGADTSATWQSIIAH 33
           LSGAISVRNPHLAKLLAAKGADTSATWQSIIAH
Sbjct: 498 LSGAISVRNPHLAKLLAAKGADTSATWQSIIAH 530


>ref|NP_766647.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           japonicum USDA 110]
 dbj|BAC45272.1| bll0007 [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/33 (93%), Positives = 33/33 (100%)

Query: 1   LSGAISVRNPHLAKLLAAKGADTSATWQSIIAH 33
           LSGAISVRNPHLAK+LAAKGADTSATW+SIIAH
Sbjct: 576 LSGAISVRNPHLAKVLAAKGADTSATWESIIAH 608


>ref|YP_426532.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           rubrum ATCC 11170]
 gb|ABC22245.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC
           11170]
 gb|AEO47962.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           rubrum F11]
          Length = 629

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 27/33 (81%)

Query: 1   LSGAISVRNPHLAKLLAAKGADTSATWQSIIAH 33
           LSG+ SVRNPHLA+ LA KG DT+ TWQSII H
Sbjct: 485 LSGSFSVRNPHLARRLADKGLDTAETWQSIIEH 517


>ref|YP_004679355.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Midichloria mitochondrii IricVA]
 gb|AEI88669.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Midichloria mitochondrii IricVA]
          Length = 625

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 1   LSGAISVRNPHLAKLLAAKGADTSATWQSIIAH 33
           L+G+ +VRN HL KLLAAKG DT  TW SI+ +
Sbjct: 466 LTGSFNVRNKHLKKLLAAKGFDTPETWSSIMNY 498


>ref|YP_003817120.1| ribonucleoside-diphosphate reductase subunit alpha [Brevundimonas
           subvibrioides ATCC 15264]
 gb|ADK99496.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 631

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 1   LSGAISVRNPHLAKLLAAKGADTSATWQSIIAH 33
           LSG+ +V+NP+L KLL   GA+T A W SI+ H
Sbjct: 479 LSGSFAVKNPYLEKLLDGYGANTDAVWSSILEH 511