BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0103.0009.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766647.1| ribonucleotide-diphosphate reductase subunit al... 511 e-143 emb|CAQ57558.1| NrdA protein [Bradyrhizobium elkanii] 509 e-142 ref|YP_426532.1| ribonucleotide-diphosphate reductase subunit al... 432 e-119 ref|XP_002163270.1| PREDICTED: similar to RiboNucleotide Reducta... 390 e-107 ref|YP_002129184.1| ribonucleoside-diphosphate reductase, alpha ... 389 e-106 >ref|NP_766647.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium japonicum USDA 110] dbj|BAC45272.1| bll0007 [Bradyrhizobium japonicum USDA 110] Length = 723 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 246/257 (95%), Positives = 249/257 (96%) Query: 1 VKGGVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKASGDFNRK 60 +GGVTSGIIPFIHV DGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKASGDFNRK Sbjct: 256 ARGGVTSGIIPFIHVTDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKASGDFNRK 315 Query: 61 SLNLHHGINVTDEFMCAVGAGTAFALRSPKTNEVVREIDARQLWQRILENRLQTGEPYLL 120 SLNLHHGINVTDEFMCAVGAGTAFALRSPKTNEVVREIDARQLWQRILENRLQTGEPYLL Sbjct: 316 SLNLHHGINVTDEFMCAVGAGTAFALRSPKTNEVVREIDARQLWQRILENRLQTGEPYLL 375 Query: 121 FIDTVNRALPKHQRELGLEVSTSNLCSEITLPTGIDHRGEERTAVCCLSSLNLETWDQWN 180 FIDTVNRALPKHQRELGLEVSTSNLCSEITL TGIDHRGEERTAVCCLSSLNLETWDQWN Sbjct: 376 FIDTVNRALPKHQRELGLEVSTSNLCSEITLSTGIDHRGEERTAVCCLSSLNLETWDQWN 435 Query: 181 EEPGFIEDVMRFLDNVLTHFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPME 240 EEPGFIEDVMRFLDNVLTHFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPME Sbjct: 436 EEPGFIEDVMRFLDNVLTHFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPME 495 Query: 241 SVVAKSFNLNMFXRFSR 257 +AKSFNLNMF + R Sbjct: 496 GTLAKSFNLNMFRKLRR 512 >emb|CAQ57558.1| NrdA protein [Bradyrhizobium elkanii] Length = 645 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 245/257 (95%), Positives = 252/257 (98%) Query: 1 VKGGVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKASGDFNRK 60 VKGGVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKASGDFNRK Sbjct: 178 VKGGVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKASGDFNRK 237 Query: 61 SLNLHHGINVTDEFMCAVGAGTAFALRSPKTNEVVREIDARQLWQRILENRLQTGEPYLL 120 SLNLHHGINVTD FM AVGAGTAFALRSP+TN+V+REIDARQLWQRILENRLQTGEPYLL Sbjct: 238 SLNLHHGINVTDAFMRAVGAGTAFALRSPRTNDVIREIDARQLWQRILENRLQTGEPYLL 297 Query: 121 FIDTVNRALPKHQRELGLEVSTSNLCSEITLPTGIDHRGEERTAVCCLSSLNLETWDQWN 180 FIDTVNR+LPKHQRELGL+VSTSNLCSEITLPTGIDHRGEERTAVCCLSSLNLETWDQWN Sbjct: 298 FIDTVNRSLPKHQRELGLKVSTSNLCSEITLPTGIDHRGEERTAVCCLSSLNLETWDQWN 357 Query: 181 EEPGFIEDVMRFLDNVLTHFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPME 240 E+PGFIEDVMRFLDNVLTHFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPME Sbjct: 358 EKPGFIEDVMRFLDNVLTHFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPME 417 Query: 241 SVVAKSFNLNMFXRFSR 257 SVVAKSFNLNMF + R Sbjct: 418 SVVAKSFNLNMFRKIRR 434 >ref|YP_426532.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum rubrum ATCC 11170] gb|ABC22245.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC 11170] gb|AEO47962.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum rubrum F11] Length = 629 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/258 (79%), Positives = 228/258 (88%), Gaps = 1/258 (0%) Query: 1 VKG-GVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKASGDFNR 59 VKG G TSGIIPFI VMD LTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKASGDFNR Sbjct: 164 VKGNGATSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKASGDFNR 223 Query: 60 KSLNLHHGINVTDEFMCAVGAGTAFALRSPKTNEVVREIDARQLWQRILENRLQTGEPYL 119 KSLNLHH IN+TD+FM AV FAL+SPK+ EV+R + ARQLWQ+ILE RLQTGEPYL Sbjct: 224 KSLNLHHAINITDDFMEAVRDDRQFALKSPKSGEVLRSVGARQLWQKILETRLQTGEPYL 283 Query: 120 LFIDTVNRALPKHQRELGLEVSTSNLCSEITLPTGIDHRGEERTAVCCLSSLNLETWDQW 179 LF DTVNRALPKHQR+LGL VS+SNLC+EITLPTG DHRG+ERTAVCCLSSLN+ETWD+W Sbjct: 284 LFTDTVNRALPKHQRDLGLRVSSSNLCAEITLPTGRDHRGQERTAVCCLSSLNIETWDEW 343 Query: 180 NEEPGFIEDVMRFLDNVLTHFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPM 239 PGFIEDV+RFLDNVL+HFI APDGM+RA YAA+RERSVGLGVMGFHSFLQA+GIP Sbjct: 344 ENAPGFIEDVLRFLDNVLSHFIETAPDGMERAAYAAMRERSVGLGVMGFHSFLQARGIPF 403 Query: 240 ESVVAKSFNLNMFXRFSR 257 ES +AKS+NL +F + R Sbjct: 404 ESALAKSWNLRLFRKIRR 421 >ref|XP_002163270.1| PREDICTED: similar to RiboNucleotide Reductase family member (rnr-1), partial [Hydra magnipapillata] Length = 428 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 183/251 (72%), Positives = 213/251 (84%) Query: 2 KGGVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKASGDFNRKS 61 + G +SGIIPFI VMD TLAISQGSLRRGSAAVYLDIHHPEIEEF++IRK SGDFNRKS Sbjct: 152 RAGESSGIIPFIRVMDSQTLAISQGSLRRGSAAVYLDIHHPEIEEFVDIRKPSGDFNRKS 211 Query: 62 LNLHHGINVTDEFMCAVGAGTAFALRSPKTNEVVREIDARQLWQRILENRLQTGEPYLLF 121 LNLHHG+N+TD+FM AV F L SPKT +VV+ +DAR L+Q+ILE R+QTGEPYL+F Sbjct: 212 LNLHHGVNITDKFMQAVKHNKPFELLSPKTKKVVKTVDARLLFQKILETRMQTGEPYLVF 271 Query: 122 IDTVNRALPKHQRELGLEVSTSNLCSEITLPTGIDHRGEERTAVCCLSSLNLETWDQWNE 181 DTVN++LPKHQRELGL+V SNLCSEI LPTGIDH G ERTAVCCLSSLNLE WD+W++ Sbjct: 272 TDTVNKSLPKHQRELGLKVKMSNLCSEILLPTGIDHLGNERTAVCCLSSLNLEKWDEWHD 331 Query: 182 EPGFIEDVMRFLDNVLTHFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPMES 241 P IED++RFLDNVL +I AP+GM RA+Y+A RERSVGLGVMGFHSFLQAK IP ES Sbjct: 332 HPLMIEDILRFLDNVLQTYIDEAPEGMARAKYSATRERSVGLGVMGFHSFLQAKNIPFES 391 Query: 242 VVAKSFNLNMF 252 +AKS+N+ +F Sbjct: 392 AMAKSWNMRIF 402 >ref|YP_002129184.1| ribonucleoside-diphosphate reductase, alpha subunit [Phenylobacterium zucineum HLK1] gb|ACG76755.1| ribonucleoside-diphosphate reductase, alpha subunit [Phenylobacterium zucineum HLK1] Length = 619 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 191/258 (74%), Positives = 213/258 (82%), Gaps = 1/258 (0%) Query: 1 VKG-GVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKASGDFNR 59 VKG G TSGIIPFI VMD LTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRK SGDFNR Sbjct: 153 VKGAGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKPSGDFNR 212 Query: 60 KSLNLHHGINVTDEFMCAVGAGTAFALRSPKTNEVVREIDARQLWQRILENRLQTGEPYL 119 KSLNLHHG+++TDEFM AV G F LRSPKT EV+RE+DAR LWQ+ILE RLQTGEPYL Sbjct: 213 KSLNLHHGLSITDEFMEAVRDGAMFGLRSPKTGEVIREVDARSLWQKILEIRLQTGEPYL 272 Query: 120 LFIDTVNRALPKHQRELGLEVSTSNLCSEITLPTGIDHRGEERTAVCCLSSLNLETWDQW 179 +F DTVNRA+P+HQRELGL+V SNLCSEI L TG DH G+ERTAVCCLSS+N E + +W Sbjct: 273 IFSDTVNRAMPQHQRELGLQVRQSNLCSEIMLHTGQDHLGQERTAVCCLSSVNAEKFLEW 332 Query: 180 NEEPGFIEDVMRFLDNVLTHFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPM 239 + P FIEDVMRFLDNVL FI AP MK A YAA RERSVGLG+MGFHSFLQ + +P Sbjct: 333 RDHPTFIEDVMRFLDNVLEDFIHRAPPEMKNAVYAAKRERSVGLGLMGFHSFLQQQNVPF 392 Query: 240 ESVVAKSFNLNMFXRFSR 257 ES +AKS+N+ +F R Sbjct: 393 ESALAKSWNMRLFKTLRR 410