BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0102.0001.p (356 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767219.1| SUN protein [Bradyrhizobium japonicum USDA 110]... 611 e-173 ref|YP_001236523.1| putative ribosomal RNA small subunit methylt... 575 e-162 ref|YP_001202542.1| putative ribosomal RNA small subunit methylt... 569 e-160 ref|YP_575558.1| Fmu (Sun) [Nitrobacter hamburgensis X14] >gi|91... 561 e-158 ref|YP_778969.1| sun protein [Rhodopseudomonas palustris BisA53]... 560 e-157 >ref|NP_767219.1| SUN protein [Bradyrhizobium japonicum USDA 110] dbj|BAC45844.1| SUN protein [Bradyrhizobium japonicum USDA 110] Length = 448 Score = 611 bits (1575), Expect = e-173, Method: Compositional matrix adjust. Identities = 299/345 (86%), Positives = 327/345 (94%) Query: 1 MPPSRFAVPAEVPGLAARRIAADILDGVLHKHRTLDDQLDGAGAHPGLKSLADRDRALMR 60 MP RFA P+EVPGLAARRIAADI+DGVLHKHRTLDDQLDG+GAHPGLK+LADRDRALMR Sbjct: 1 MPSQRFAPPSEVPGLAARRIAADIVDGVLHKHRTLDDQLDGSGAHPGLKTLADRDRALMR 60 Query: 61 RLVSTILRKLGTLGHLLSRLLDRGVPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL 120 RLV+T+LR+LGTLGH+LSRLLD+G+P++APRAQSALLIGAAQILWMDVPDHAAVDLSVRL Sbjct: 61 RLVATVLRRLGTLGHVLSRLLDKGIPSEAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL 120 Query: 121 VQSDRRAAKYAGLVNAVLRRCAREGQGLIDEISTQTLDLPPWMLARWNAHYGEATAREMA 180 VQSDRRAA+YAGLVNAVLRRCAREGQ L++E++TQ+LDLPPW+LARW AHYGEATAR+MA Sbjct: 121 VQSDRRAARYAGLVNAVLRRCAREGQALVEEVATQSLDLPPWLLARWRAHYGEATARDMA 180 Query: 181 LALGHEPSLDLTVKSDAPQWASRLHGEILPTGTVRTLLQGSVTMLPGFAEGQWWVQDAAA 240 LALGHEPSLDLTVKSDA QWASRLHGE LPTGTVR LL GSVTMLPGFAEGQWWVQDAAA Sbjct: 181 LALGHEPSLDLTVKSDAEQWASRLHGETLPTGTVRMLLHGSVTMLPGFAEGQWWVQDAAA 240 Query: 241 ALPVRLFGDIKDKAVADLCAAPGGKTAQLALAGAHVTAVDRSPARVARLRDNLTRLALQA 300 ALP RLFGDIK K++ADLCAAPGGKTAQLA AGAHVTA+DRSPARVARLR+NL RL+LQA Sbjct: 241 ALPARLFGDIKGKSIADLCAAPGGKTAQLAHAGAHVTAIDRSPARVARLRENLARLSLQA 300 Query: 301 ETVVADAAEWPAEAASFDGILVDAPCSSTGTIRRHPDVAWLRQEA 345 ETVVADAAEW A FDGIL+DAPC+STGTIRRHPDVAWLRQE+ Sbjct: 301 ETVVADAAEWAGPAEGFDGILIDAPCTSTGTIRRHPDVAWLRQES 345 >ref|YP_001236523.1| putative ribosomal RNA small subunit methyltransferase B [Bradyrhizobium sp. BTAi1] gb|ABQ32617.1| putative Ribosomal RNA small subunit methyltransferase B [Bradyrhizobium sp. BTAi1] Length = 450 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 288/346 (83%), Positives = 311/346 (89%), Gaps = 1/346 (0%) Query: 1 MPPSRFAVPAEVPGLAARRIAADILDGVLHKHRTLDDQLDGAGAHPGLKSLADRDRALMR 60 MPP RFA +EVPGLAARRIAAD++DGVLHKHRTLDDQLDG GAHPGLK LADRDRALMR Sbjct: 1 MPPPRFATSSEVPGLAARRIAADVVDGVLHKHRTLDDQLDGTGAHPGLKQLADRDRALMR 60 Query: 61 RLVSTILRKLGTLGHLLSRLLDRGVPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL 120 RLV+T LR+LGTLGH+LSRLLDRGVPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL Sbjct: 61 RLVATTLRRLGTLGHVLSRLLDRGVPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL 120 Query: 121 VQSDRRAAKYAGLVNAVLRRCAREGQGLIDEISTQTLDLPPWMLARWNAHYGEATAREMA 180 VQ+DRRAAKYAGLVNAVLRRCAREG GL+D++ Q LD+ PW+L RW AHYGEATA+ +A Sbjct: 121 VQADRRAAKYAGLVNAVLRRCAREGAGLLDDVQGQPLDIAPWLLTRWIAHYGEATAKNIA 180 Query: 181 LALGHEPSLDLTVKSDAPQWASRLHGEILPTGTVRTLLQGSVTMLPGFAEGQWWVQDAAA 240 ALG EPSLDLTVKSDA QWA+RLHGE+LPT TVRTLL GSVT+LPGFAEGQWWVQDAAA Sbjct: 181 AALGQEPSLDLTVKSDAAQWAARLHGEVLPTETVRTLLHGSVTVLPGFAEGQWWVQDAAA 240 Query: 241 ALPVRLFGDIKDKAVADLCAAPGGKTAQLALAGAHVTAVDRSPARVARLRDNLTRLALQA 300 ALP RLFGD+ K +ADLCAAPGGKTAQLA GAHVTAVDRSPAR+ARL+DN+TRL L A Sbjct: 241 ALPARLFGDVAGKTMADLCAAPGGKTAQLAHGGAHVTAVDRSPARMARLKDNMTRLQLTA 300 Query: 301 ETVVADAAEW-PAEAASFDGILVDAPCSSTGTIRRHPDVAWLRQEA 345 ET VADAAEW PA FDGILVDAPC+STGTIRRHPDV WLR EA Sbjct: 301 ETAVADAAEWQPAATGGFDGILVDAPCTSTGTIRRHPDVGWLRSEA 346 >ref|YP_001202542.1| putative ribosomal RNA small subunit methyltransferase B [Bradyrhizobium sp. ORS 278] emb|CAL74296.1| putative Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase)(rsmB) [Bradyrhizobium sp. ORS 278] Length = 450 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 285/346 (82%), Positives = 312/346 (90%), Gaps = 1/346 (0%) Query: 1 MPPSRFAVPAEVPGLAARRIAADILDGVLHKHRTLDDQLDGAGAHPGLKSLADRDRALMR 60 MPP RFA P+EVPGLAARRIAAD++DGVLHKHRTLDDQLDG GAHPGLK LADRDRALMR Sbjct: 1 MPPPRFATPSEVPGLAARRIAADVIDGVLHKHRTLDDQLDGPGAHPGLKQLADRDRALMR 60 Query: 61 RLVSTILRKLGTLGHLLSRLLDRGVPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL 120 RLV+T LR+LGTLG++LSRLLDRG+PTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL Sbjct: 61 RLVATTLRRLGTLGNVLSRLLDRGIPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL 120 Query: 121 VQSDRRAAKYAGLVNAVLRRCAREGQGLIDEISTQTLDLPPWMLARWNAHYGEATAREMA 180 VQ+DRRAAKYAGLVNAVLRRCAREG L+D+ Q LD+ PW+L RW HYGEATAR++A Sbjct: 121 VQADRRAAKYAGLVNAVLRRCAREGAALLDDAKGQPLDIAPWLLKRWTDHYGEATARDIA 180 Query: 181 LALGHEPSLDLTVKSDAPQWASRLHGEILPTGTVRTLLQGSVTMLPGFAEGQWWVQDAAA 240 ALG EPSLDLTVKSD QWASRLHGE+LPTGTVRTLL GSVT+LPGFAEGQWWVQDAAA Sbjct: 181 AALGQEPSLDLTVKSDPAQWASRLHGEVLPTGTVRTLLHGSVTVLPGFAEGQWWVQDAAA 240 Query: 241 ALPVRLFGDIKDKAVADLCAAPGGKTAQLALAGAHVTAVDRSPARVARLRDNLTRLALQA 300 ALP RLFGD+ K++ADLCAAPGGKTAQLA GA VTAVDRSPAR++RL+DN+TRL L A Sbjct: 241 ALPARLFGDVAGKSMADLCAAPGGKTAQLAHGGARVTAVDRSPARMSRLKDNMTRLQLPA 300 Query: 301 ETVVADAAEW-PAEAASFDGILVDAPCSSTGTIRRHPDVAWLRQEA 345 ETVV DAAEW PA+A FDGIL+DAPC+STGTIRRHPDV WLR EA Sbjct: 301 ETVVTDAAEWQPADAGGFDGILLDAPCTSTGTIRRHPDVGWLRNEA 346 >ref|YP_575558.1| Fmu (Sun) [Nitrobacter hamburgensis X14] gb|ABE61098.1| Fmu (Sun) [Nitrobacter hamburgensis X14] Length = 450 Score = 561 bits (1445), Expect = e-158, Method: Compositional matrix adjust. Identities = 280/347 (80%), Positives = 314/347 (90%), Gaps = 2/347 (0%) Query: 1 MPPSRFAVPAEVPGLAARRIAADILDGVLHKHRTLDDQLDGAGAHPGLKSLADRDRALMR 60 MP +RFA P EVPGLAARRIAADILDGVLHKHRTLD+QL+GA AHPGLK+LADRDRALMR Sbjct: 1 MPSTRFAPPVEVPGLAARRIAADILDGVLHKHRTLDEQLEGAAAHPGLKALADRDRALMR 60 Query: 61 RLVSTILRKLGTLGHLLSRLLDRGVPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL 120 RLV+TILR+LGTLGH+LSRLLDRG+PTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL Sbjct: 61 RLVATILRRLGTLGHVLSRLLDRGIPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL 120 Query: 121 VQSDRRAAKYAGLVNAVLRRCAREGQGLIDEISTQTLDLPPWMLARWNAHYGEATAREMA 180 VQSDRRAAKYAGLVNAVLRRCAREGQ LIDE+ ++ LD+PPW++ RW A+YGE TA+ +A Sbjct: 121 VQSDRRAAKYAGLVNAVLRRCAREGQPLIDEVRSEALDIPPWLMTRWIANYGENTAKAIA 180 Query: 181 LALGHEPSLDLTVKSDAPQWASRLHGEILPTGTVRTLLQGSVTMLPGFAEGQWWVQDAAA 240 A+ HEPSLDLTVK+ A QWA+RLHGE+LPTGTVRT LQG VTMLPGF+EG+WWVQDAAA Sbjct: 181 TAISHEPSLDLTVKAGAAQWATRLHGEVLPTGTVRTALQGPVTMLPGFSEGRWWVQDAAA 240 Query: 241 ALPVRLFGDIKDKAVADLCAAPGGKTAQLALAGAHVTAVDRSPARVARLRDNLTRLALQA 300 ALP RLFGD++ + VADLCAAPGGKTAQLA AGA VTA+DRSP RVARLRDNL RL+L A Sbjct: 241 ALPARLFGDLQGRRVADLCAAPGGKTAQLAQAGAEVTAIDRSPNRVARLRDNLGRLSLGA 300 Query: 301 ETVVADAAEWPAEAA--SFDGILVDAPCSSTGTIRRHPDVAWLRQEA 345 +VADA EW +AA FDG+LVDAPCSSTGTIRRHPDVAWL+Q++ Sbjct: 301 RALVADAVEWQDDAAGSGFDGVLVDAPCSSTGTIRRHPDVAWLKQDS 347 >ref|YP_778969.1| sun protein [Rhodopseudomonas palustris BisA53] gb|ABJ03989.1| sun protein [Rhodopseudomonas palustris BisA53] Length = 449 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 279/345 (80%), Positives = 308/345 (89%) Query: 1 MPPSRFAVPAEVPGLAARRIAADILDGVLHKHRTLDDQLDGAGAHPGLKSLADRDRALMR 60 MP +RFA PAEVPGLAARRIAADILDGVLHK R LDDQLDG AHPGLK+L+DRDRALMR Sbjct: 1 MPSTRFAPPAEVPGLAARRIAADILDGVLHKRRMLDDQLDGPAAHPGLKTLSDRDRALMR 60 Query: 61 RLVSTILRKLGTLGHLLSRLLDRGVPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRL 120 RLV+TILRKLGTLGH+LSRLLDRGVPTDAPRAQSALLIGAAQILWM+VPDHAAVDLSVRL Sbjct: 61 RLVATILRKLGTLGHVLSRLLDRGVPTDAPRAQSALLIGAAQILWMEVPDHAAVDLSVRL 120 Query: 121 VQSDRRAAKYAGLVNAVLRRCAREGQGLIDEISTQTLDLPPWMLARWNAHYGEATAREMA 180 VQSDRRAAKYAGLVNAVLRRCAREGQ LI E+ Q +DLPPW+ ARW+AHYGE TAR++A Sbjct: 121 VQSDRRAAKYAGLVNAVLRRCAREGQPLIAEVQGQPIDLPPWLFARWSAHYGEETARKIA 180 Query: 181 LALGHEPSLDLTVKSDAPQWASRLHGEILPTGTVRTLLQGSVTMLPGFAEGQWWVQDAAA 240 LALG EPSLDLTVKSD WA+RLHGEILPTGT+RT LQGSV ML G+ +GQWWVQDAAA Sbjct: 181 LALGEEPSLDLTVKSDIEAWAARLHGEILPTGTLRTALQGSVKMLHGYEDGQWWVQDAAA 240 Query: 241 ALPVRLFGDIKDKAVADLCAAPGGKTAQLALAGAHVTAVDRSPARVARLRDNLTRLALQA 300 ALP RLFG ++ + + DLCAAPGGKTAQLAL GA+VTA+DRSP RVARL++NL RL+L+ Sbjct: 241 ALPARLFGALQGQRILDLCAAPGGKTAQLALGGANVTAIDRSPNRVARLKENLARLSLKV 300 Query: 301 ETVVADAAEWPAEAASFDGILVDAPCSSTGTIRRHPDVAWLRQEA 345 ETVVADA EW FDG+LVDAPCSSTGTIRRHPD+AWL+QEA Sbjct: 301 ETVVADATEWDGGDTRFDGVLVDAPCSSTGTIRRHPDIAWLKQEA 345