BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0101.0009.p         (115 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771841.1| hypothetical protein bll5201 [Bradyrhizobium ja...   185   2e-45
ref|YP_571680.1| hypothetical protein Nham_4233 [Nitrobacter ham...   165   2e-39
ref|YP_579132.1| hypothetical protein Nham_4002 [Nitrobacter ham...   164   3e-39
ref|YP_002290453.1| hypothetical protein OCAR_7485 [Oligotropha ...   136   1e-30
ref|YP_003192112.1| hypothetical protein Dtox_2710 [Desulfotomac...    46   0.002

>ref|NP_771841.1| hypothetical protein bll5201 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50466.1| bll5201 [Bradyrhizobium japonicum USDA 110]
          Length = 155

 Score =  185 bits (469), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 106/115 (92%)

Query: 1   MTEYVIRFVLGGAVVSAFAMLGDLLRPKSFAGLFGAAPSVALATLGIAVYQHGVNYAALQ 60
           MTEY++RF++GGAVVSAFAMLGDLLRPKSFAGLF AAPSVALATLGIAV+QHG +YA LQ
Sbjct: 41  MTEYIVRFLVGGAVVSAFAMLGDLLRPKSFAGLFAAAPSVALATLGIAVHQHGAHYATLQ 100

Query: 61  AQAMIAGAVALAIYSVVACHLLVRAKLRAVTATLLSLVIWLVAAFGLLVFAGGQT 115
           AQAM+AG++ALA+YSVV C +LVRA+LRA+ ATLLSLV+WL+ AFG+L  AGGQT
Sbjct: 101 AQAMLAGSIALAVYSVVVCQILVRARLRALPATLLSLVVWLIVAFGVLTLAGGQT 155


>ref|YP_571680.1| hypothetical protein Nham_4233 [Nitrobacter hamburgensis X14]
 gb|ABE64848.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 115

 Score =  165 bits (417), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 98/115 (85%)

Query: 1   MTEYVIRFVLGGAVVSAFAMLGDLLRPKSFAGLFGAAPSVALATLGIAVYQHGVNYAALQ 60
           M+EYVIRF LGG  VSAFAM+GD+LRPKSFAGLF AAPSVALATLGIAVY HG  YAA+Q
Sbjct: 1   MSEYVIRFFLGGIAVSAFAMVGDILRPKSFAGLFSAAPSVALATLGIAVYLHGAGYAAVQ 60

Query: 61  AQAMIAGAVALAIYSVVACHLLVRAKLRAVTATLLSLVIWLVAAFGLLVFAGGQT 115
           ++AMIAGA+ALAIYSVV C LLVRA+L A+ A L+SLV+WL+ AFGLL   G +T
Sbjct: 61  SRAMIAGAIALAIYSVVVCQLLVRARLTAMPAALISLVVWLMVAFGLLAMFGART 115


>ref|YP_579132.1| hypothetical protein Nham_4002 [Nitrobacter hamburgensis X14]
 gb|ABE64672.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 115

 Score =  164 bits (416), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/115 (73%), Positives = 98/115 (85%)

Query: 1   MTEYVIRFVLGGAVVSAFAMLGDLLRPKSFAGLFGAAPSVALATLGIAVYQHGVNYAALQ 60
           M+EYVIRF LGG VVSAFAM+GD+LRPKSFAGLF AAPSVALATLGIAV +HG  YAALQ
Sbjct: 1   MSEYVIRFFLGGIVVSAFAMVGDILRPKSFAGLFSAAPSVALATLGIAVDRHGAGYAALQ 60

Query: 61  AQAMIAGAVALAIYSVVACHLLVRAKLRAVTATLLSLVIWLVAAFGLLVFAGGQT 115
           ++AM+AGA+ALAIYSVV C  L+R+ L A+ ATL+SLV+WL+ AFGLL   GG T
Sbjct: 61  SRAMMAGAIALAIYSVVVCQTLIRSPLTAMPATLISLVVWLIVAFGLLAMFGGGT 115


>ref|YP_002290453.1| hypothetical protein OCAR_7485 [Oligotropha carboxidovorans OM5]
 ref|YP_004631613.1| hypothetical protein OCA5_c06490 [Oligotropha carboxidovorans OM5]
 gb|ACI94588.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
 gb|AEI01797.1| hypothetical protein OCA4_c06480 [Oligotropha carboxidovorans OM4]
 gb|AEI05372.1| hypothetical protein OCA5_c06490 [Oligotropha carboxidovorans OM5]
          Length = 112

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 90/112 (80%)

Query: 1   MTEYVIRFVLGGAVVSAFAMLGDLLRPKSFAGLFGAAPSVALATLGIAVYQHGVNYAALQ 60
           M+EY+IRF+LGG  VS F+++GD++RPKSFAGLFGAAPSVALATLGIA  +HG +Y  +Q
Sbjct: 1   MSEYLIRFLLGGLFVSLFSIIGDIVRPKSFAGLFGAAPSVALATLGIAWAEHGASYVGVQ 60

Query: 61  AQAMIAGAVALAIYSVVACHLLVRAKLRAVTATLLSLVIWLVAAFGLLVFAG 112
           A AMI GA+ALA YS+V C LL+RA+L A+ ATL+++ +WL+ AF     AG
Sbjct: 61  ATAMIWGAIALACYSIVVCQLLMRAQLGALAATLVAMPVWLLVAFEFHAVAG 112


>ref|YP_003192112.1| hypothetical protein Dtox_2710 [Desulfotomaculum acetoxidans DSM
           771]
 gb|ACV63489.1| hypothetical protein Dtox_2710 [Desulfotomaculum acetoxidans DSM
           771]
          Length = 125

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 1/104 (0%)

Query: 1   MTEYVIRFVLGGAVVSAFAMLGDLLRPKSFAGLFGAAPSVALATLGIAVYQHGVNYAALQ 60
           + + V+RF LGG+ V+A  ++  LL  KSFAG+F A P+V +A + +A    G +YAA  
Sbjct: 5   IKDLVLRFFLGGSAVAACYIVLQLLPWKSFAGIFAAFPAVMVAAVIMAGISGGSHYAAEV 64

Query: 61  AQAMIAGAVALAIYSVVACHLLVRAKLRAVTATLLSLVIWLVAA 104
           A    AG +   +  +VA  ++    + A  A ++SL+ WL+++
Sbjct: 65  ALGATAGMLGCTVCVLVAIIIMTYLHIWA-AALVISLLAWLISS 107