BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0008.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003643683.1| transcriptional regulator, TetR family [Thio...    64   6e-09
ref|ZP_02469042.1| transcriptional regulator, TetR-family protei...    64   1e-08
ref|NP_773938.1| transcriptional regulator [Bradyrhizobium japon...    61   5e-08
ref|YP_001860835.1| TetR family transcriptional regulator [Burkh...    59   2e-07
ref|YP_004349395.1| TetR family transcriptional regulator [Burkh...    57   9e-07

>ref|YP_003643683.1| transcriptional regulator, TetR family [Thiomonas intermedia K12]
 gb|ADG31353.1| transcriptional regulator, TetR family [Thiomonas intermedia K12]
          Length = 231

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 3   IVNITDGTPQRGCLTTRTALDAAISSADVRQRVQDVLTRLEQLVGKAISAAPNRRSPA-D 61
           I ++T   P RGC TT+TA+++ +    ++ RV+D+L +LE ++ +A+S    R S A  
Sbjct: 91  ITSMTADVPPRGCFTTKTAVESDVIGESMQNRVRDLLEQLEAVIAEALSRDALRASLAVP 150

Query: 62  ANRLARVIVTFTRGLAVMERAGYSRKQLRESA 93
            ++ A+ I+ FTRGLAVMER  +   +LR+ A
Sbjct: 151 PDKAAQAIIAFTRGLAVMERIYHEPMRLRDLA 182


>ref|ZP_02469042.1| transcriptional regulator, TetR-family protein [Burkholderia
           thailandensis MSMB43]
          Length = 244

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 7/104 (6%)

Query: 3   IVNITDGTPQRGCLTTRTALDAAISSADVRQRVQDVLTRLEQLVGKAISAAPNRRS---- 58
           I N++ G+P RGCLTT+ A ++   S  V++ ++ +L RLE  + +++S  P R S    
Sbjct: 141 IGNMSIGSPPRGCLTTKMAGESDEVSPVVQECLRTLLDRLETRIAESLSREPLRSSLSIP 200

Query: 59  PADANRLARVIVTFTRGLAVMERAGYSRKQLRESATTFIDAVIG 102
           PA A   AR+IV F+RGL V+ER  +   +L  +A +F   ++G
Sbjct: 201 PAQA---ARMIVVFSRGLTVIERVYHDPDRLHATARSFTKLLLG 241


>ref|NP_773938.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52563.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 176

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 12/113 (10%)

Query: 1   MIIVNITDGTPQRGCLTTRT-----ALDAAISSADVRQRVQDVLTRLEQLVGKAISAAPN 55
           + IVN   G+P RGC TTR      A++      D RQ   ++++R+  LV   +SA   
Sbjct: 65  LTIVNFRSGSPPRGCPTTRGLMELGAVEGEGLDEDARQAFANLISRITALVQDTLSAGAK 124

Query: 56  RR----SPADANRLARVIVTFTRGLAVMERAGYSRKQLRESATTFIDAVIGDA 104
           R     +PA A   A  I+T TRGLAV+ERA     QLR+ A+  ID V+G A
Sbjct: 125 RGEFNGNPAVA---ALHIITVTRGLAVLERAFGDDAQLRKIASHTIDLVLGKA 174


>ref|YP_001860835.1| TetR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gb|ACC73789.1| transcriptional regulator, TetR family [Burkholderia phymatum
           STM815]
          Length = 193

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 3   IVNITDGTPQRGCLTTRTALDAAISSADVRQRVQDVLTRLEQLVGKAISAAPNR-RSPAD 61
           I +IT GTP RGCL+T+TA++    S   R+ VQ +L  LE  V   +     R +    
Sbjct: 91  IRSITQGTPTRGCLSTKTAVEIDPDSQRPREAVQAMLDALEAAVLAVLDTKEARAQLTLP 150

Query: 62  ANRLARVIVTFTRGLAVMERAGYSRKQLRESATTFIDAVI 101
             + A ++VT TRG+AVMER     K+L+++A   +DA++
Sbjct: 151 PQQAANLVVTTTRGIAVMERVYGDPKKLKQTAFALVDALV 190


>ref|YP_004349395.1| TetR family transcriptional regulator [Burkholderia gladioli BSR3]
 gb|AEA63883.1| TetR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 200

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 1/97 (1%)

Query: 2   IIVNITDGTPQRGCLTTRTALDAAISSADVRQRVQDVLTRLEQLVGKAISAA-PNRRSPA 60
           +I ++T GTP RGCL+T+TA+        +RQ +  +L R E ++   ++   P      
Sbjct: 90  VIASMTTGTPTRGCLSTKTAVAGDRIDEPIRQALAAMLDRFEAVLAARLAQPDPELEPSV 149

Query: 61  DANRLARVIVTFTRGLAVMERAGYSRKQLRESATTFI 97
            A   A +I+TFTRG+ V+ER     ++L ++A T +
Sbjct: 150 PAKEAAALIITFTRGIVVIERVYQEPRRLHDNARTLV 186