BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0001.p         (779 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_530153.1| RNA binding S1 [Rhodopseudomonas palustris BisB...  1269   0.0  
ref|YP_576345.1| RNA binding S1 [Nitrobacter hamburgensis X14] >...  1250   0.0  
ref|ZP_08628945.1| transcription accessory protein [Bradyrhizobi...  1239   0.0  
ref|NP_773920.1| hypothetical protein bll7280 [Bradyrhizobium ja...  1233   0.0  
ref|YP_779354.1| RNA-binding S1 domain-containing protein [Rhodo...  1204   0.0  

>ref|YP_530153.1| RNA binding S1 [Rhodopseudomonas palustris BisB18]
 gb|ABD85834.1| RNA binding S1 [Rhodopseudomonas palustris BisB18]
          Length = 782

 Score = 1269 bits (3285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/784 (80%), Positives = 700/784 (89%), Gaps = 13/784 (1%)

Query: 3   VAKIHHQIAQELGVRDEQVEAAVTLLDGGATVPFIARYRKELTGALDDAQLRTLEERLTY 62
           +A I  QIA+ELGVR++QV+AAV LLDGGATVPF+ARYRKE TGALDDAQLRTLEERL Y
Sbjct: 1   MANISRQIAEELGVREQQVQAAVDLLDGGATVPFVARYRKEATGALDDAQLRTLEERLNY 60

Query: 63  LRELEERRTAVLNSIREQGKLDAALEAQIMAADSKGRLEDIYLPYKPKRRTKAEIAKEAG 122
           LRELEERR+A+LNS+REQGKLDA LEA IMAADSKGRLEDIYLP+KPKRRTKAEIA+EAG
Sbjct: 61  LRELEERRSAILNSVREQGKLDATLEAAIMAADSKGRLEDIYLPFKPKRRTKAEIAREAG 120

Query: 123 LEPLADQLLTQPENDPNEAATPFVNAEKQVADVAAALDGARAILVERFAEDADLIGALRE 182
           L PLA+ LLTQP+NDP   A PFV+A+KQVADVAAALDGARAILVERFAEDADLIG+LRE
Sbjct: 121 LAPLAEMLLTQPDNDPQAVAAPFVDADKQVADVAAALDGARAILVERFAEDADLIGSLRE 180

Query: 183 EMWSNGIMASTVRTGKKTEGEKFKDYFDFSEPLPKLPSHRILALFRGEKEEILDLAIKPE 242
            MWSNG+M S  R  KK +G KF DYFDFSEPL KLPSHRILA+FRGEKEE+LDL+I+PE
Sbjct: 181 LMWSNGVMLSKQRDNKKDDGAKFSDYFDFSEPLHKLPSHRILAMFRGEKEEVLDLSIQPE 240

Query: 243 ------AQEPVVGQPGLYELKIMNRFAISNQGRKGDKWLTETVRWAWRTKIQIHLNIDLR 296
                 A  PV    G YEL+IMNRFA+S++GR GD+WL +TVRWAWRTKIQ+HLNIDLR
Sbjct: 241 VVPAGTAPAPV----GSYELRIMNRFAVSDRGRPGDRWLIDTVRWAWRTKIQVHLNIDLR 296

Query: 297 LRLWTAAETEAVRVFASNLRDLLLAAPAGARATMGLDPGYRTGVKVAVIDATGKVVAHTA 356
           +RLWTAAE EAVRVFASNLRDLLLAAPAGAR TMGLDPG+RTGVKVAV+DATGKVVA TA
Sbjct: 297 MRLWTAAEQEAVRVFASNLRDLLLAAPAGARTTMGLDPGFRTGVKVAVVDATGKVVATTA 356

Query: 357 IFPHEPQRRWDEALAVLGKLAIEHGVELIAIGNGTASRETDKLAAELVKRLPERKMTKIV 416
           IFPHEPQRRWDEALA+LGKLA EH VELI+IGNGTASRETDKLA ELVK LPE KM+KIV
Sbjct: 357 IFPHEPQRRWDEALAILGKLAREHRVELISIGNGTASRETDKLATELVKLLPELKMSKIV 416

Query: 417 VSEAGASVYSASAFASNELPDLDVTIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDL 476
           VSEAGASVYSASAFAS ELP+LDVT+RGAVSIARRLQDPLAELVKIDPK+IGVGQYQHDL
Sbjct: 417 VSEAGASVYSASAFASEELPELDVTLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDL 476

Query: 477 GESKLARSLDAVVEDCVNAVGVDANTASVPLLARVSGIGQGLAQSIVQHRDANGPFKSRK 536
           GE+KL+RSLDAVVEDCVNAVGVDANTAS PLLARVSGIG GLAQSIVQHRDANGPF SR 
Sbjct: 477 GEAKLSRSLDAVVEDCVNAVGVDANTASAPLLARVSGIGAGLAQSIVQHRDANGPFDSRS 536

Query: 537 ALKEVPRLGPKAFEQCAGFLRISNGEDPLDSSGVHPEAYPVVRRILEATKSDIKALIGDA 596
           ALK+VPRLGPKAFEQCAGFLRI NG+DPLD+SGVHPEAYPVVR+ILEATKSDIKALIG+A
Sbjct: 537 ALKKVPRLGPKAFEQCAGFLRIQNGKDPLDASGVHPEAYPVVRKILEATKSDIKALIGNA 596

Query: 597 DVVRGLKPQSFVDDTFGLPTVTDILRELEKPGRDPRPAFKAAVFKEGVEEVKDLKKGMIL 656
           + +R ++P++FVD+ FGLPTVTDILRELEKPGRDPRPAFKAAVF EGVE +KDLK GM+L
Sbjct: 597 EALRQVQPKNFVDEHFGLPTVTDILRELEKPGRDPRPAFKAAVFMEGVETLKDLKPGMVL 656

Query: 657 EGTVTNVAAFGAFVDIGVHQDGLVHISAMSRNFIKDPREVVKPGDIVKVKVLDVEVARKR 716
           EG VTNVAAFGAFVDIGVHQDGLVHISAMSR+FIKDPREVVKPGDIVKVKVL+V+VARKR
Sbjct: 657 EGAVTNVAAFGAFVDIGVHQDGLVHISAMSRSFIKDPREVVKPGDIVKVKVLEVDVARKR 716

Query: 717 IALTLRLDDEIGPKKD--NAAPSRDFSRGKMTSSAPRRPQEQSGGSALADALRRAAEKSG 774
           IAL+LRLDDE+G K D   AAP R  SR  + + AP++ Q  +GG A A+A  RA EK  
Sbjct: 717 IALSLRLDDEVGAKADRVQAAP-RGPSRSTVAAYAPKKQQPSTGGGAFAEAFARANEKGK 775

Query: 775 RGKP 778
             KP
Sbjct: 776 PDKP 779


>ref|YP_576345.1| RNA binding S1 [Nitrobacter hamburgensis X14]
 gb|ABE61885.1| RNA binding S1 [Nitrobacter hamburgensis X14]
          Length = 778

 Score = 1250 bits (3235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/778 (80%), Positives = 698/778 (89%), Gaps = 6/778 (0%)

Query: 3   VAKIHHQIAQELGVRDEQVEAAVTLLDGGATVPFIARYRKELTGALDDAQLRTLEERLTY 62
           +A I+ +IA+ELGVR++QVEA V LLDGGATVPF+ARYRKE+TG+LDDAQLRTLEERL Y
Sbjct: 1   MANINRRIAEELGVREQQVEATVALLDGGATVPFVARYRKEITGSLDDAQLRTLEERLNY 60

Query: 63  LRELEERRTAVLNSIREQGKLDAALEAQIMAADSKGRLEDIYLPYKPKRRTKAEIAKEAG 122
           LRELE+RR  +LNS+REQGKLDAALEA I+AADSKGRLEDIYLP+KPKRRTKAEIAKE G
Sbjct: 61  LRELEDRRVTILNSVREQGKLDAALEAAILAADSKGRLEDIYLPFKPKRRTKAEIAKERG 120

Query: 123 LEPLADQLLTQPENDPNEAATPFVNAEKQVADVAAALDGARAILVERFAEDADLIGALRE 182
           LEPLA  LL +P+NDP   A PFVNAEK +ADVAAALDGARAILVE FAEDADLIGALRE
Sbjct: 121 LEPLAHLLLAEPQNDPKTVAEPFVNAEKSIADVAAALDGARAILVEHFAEDADLIGALRE 180

Query: 183 EMWSNGIMASTVRTGKKTEGEKFKDYFDFSEPLPKLPSHRILALFRGEKEEILDLAIKPE 242
           +MWSNG+MASTVR+GKKTEGEKFKDYFDFSEPL KLPSHRILA+FRGEKE+ILDL + PE
Sbjct: 181 QMWSNGLMASTVRSGKKTEGEKFKDYFDFSEPLTKLPSHRILAMFRGEKEDILDLQMLPE 240

Query: 243 AQEPVVGQPGL---YELKIMNRFAISNQGRKGDKWLTETVRWAWRTKIQIHLNIDLRLRL 299
              PV   P      ELKIM RFAIS++GR GDKWL ETVRWAWRTKIQ+HLN+DLR+RL
Sbjct: 241 ---PVSATPAPVSPCELKIMRRFAISDRGRAGDKWLIETVRWAWRTKIQVHLNVDLRMRL 297

Query: 300 WTAAETEAVRVFASNLRDLLLAAPAGARATMGLDPGYRTGVKVAVIDATGKVVAHTAIFP 359
           W AAE EAVRVFASNLRDLLLAAPAGAR TMGLDPG+RTGVKVAV+DATGKVVA TA++P
Sbjct: 298 WNAAEQEAVRVFASNLRDLLLAAPAGARVTMGLDPGFRTGVKVAVVDATGKVVATTAVYP 357

Query: 360 HEPQRRWDEALAVLGKLAIEHGVELIAIGNGTASRETDKLAAELVKRLPERKMTKIVVSE 419
           HEPQR+WD  LA LGKLA++H V+LIAIGNGTASRETD+LA +LVK LP+ KM+KIVVSE
Sbjct: 358 HEPQRQWDATLATLGKLAVQHRVDLIAIGNGTASRETDRLAMDLVKLLPDMKMSKIVVSE 417

Query: 420 AGASVYSASAFASNELPDLDVTIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDLGES 479
           AGASVYSASAFAS ELP+LDVT+RGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDLGES
Sbjct: 418 AGASVYSASAFASEELPELDVTLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDLGES 477

Query: 480 KLARSLDAVVEDCVNAVGVDANTASVPLLARVSGIGQGLAQSIVQHRDANGPFKSRKALK 539
           KLARSLDAVVEDCVNAVGVDANTAS PLLARVSGIG GLAQ+IVQHRD NGPFK+RK LK
Sbjct: 478 KLARSLDAVVEDCVNAVGVDANTASAPLLARVSGIGAGLAQTIVQHRDDNGPFKTRKGLK 537

Query: 540 EVPRLGPKAFEQCAGFLRISNGEDPLDSSGVHPEAYPVVRRILEATKSDIKALIGDADVV 599
           +VPRLGPKAFEQCAGFLRI+ G+DPLD+SGVHPEAYPVVR+IL AT+SDIKALIG+ D++
Sbjct: 538 QVPRLGPKAFEQCAGFLRITGGDDPLDASGVHPEAYPVVRKILAATRSDIKALIGNVDIL 597

Query: 600 RGLKPQSFVDDTFGLPTVTDILRELEKPGRDPRPAFKAAVFKEGVEEVKDLKKGMILEGT 659
           R +KPQ+FVDDTFGLPTV DILRELEKPGRDPRPAFKAAVFKEG+E +KD+K GMILEG 
Sbjct: 598 RQVKPQNFVDDTFGLPTVVDILRELEKPGRDPRPAFKAAVFKEGIETLKDVKPGMILEGA 657

Query: 660 VTNVAAFGAFVDIGVHQDGLVHISAMSRNFIKDPREVVKPGDIVKVKVLDVEVARKRIAL 719
           VTNVAAFGAFVDIGVHQDGL+HISAMS++F+KDPR VVK GD+VKVKVL+V+VARKRIAL
Sbjct: 658 VTNVAAFGAFVDIGVHQDGLIHISAMSKSFVKDPRAVVKSGDVVKVKVLEVDVARKRIAL 717

Query: 720 TLRLDDEIGPKKDNAAPSRDFSRGKMTSSAPRRPQEQSGGSALADALRRAAEKSGRGK 777
           TLRLDDE+G K + AA      + +  +S P RP +QSGG ALA+ALRRA EKSG GK
Sbjct: 718 TLRLDDELGGKSERAAQGLPRDKTRPMTSPPARPHQQSGGGALAEALRRATEKSGSGK 775


>ref|ZP_08628945.1| transcription accessory protein [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP08304.1| transcription accessory protein [Bradyrhizobiaceae bacterium SG-6C]
          Length = 782

 Score = 1239 bits (3207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/760 (83%), Positives = 682/760 (89%), Gaps = 8/760 (1%)

Query: 6   IHHQIAQELGVRDEQVEAAVTLLDGGATVPFIARYRKELTGALDDAQLRTLEERLTYLRE 65
           I  +IA EL VR++QVEAA+ LLDGGATVPFIARYRKE TGALDDAQLRTLEERLTYLRE
Sbjct: 5   ISQKIADELSVREQQVEAAIGLLDGGATVPFIARYRKEATGALDDAQLRTLEERLTYLRE 64

Query: 66  LEERRTAVLNSIREQGKLDAALEAQIMAADSKGRLEDIYLPYKPKRRTKAEIAKEAGLEP 125
           LEERR  VLNSIREQGKLDA LEA I+AADSKGRLEDIYLPYKPKRRTKAEIA+EAGLEP
Sbjct: 65  LEERRVTVLNSIREQGKLDATLEAAILAADSKGRLEDIYLPYKPKRRTKAEIAREAGLEP 124

Query: 126 LADQLLTQPENDPNEAATPFVNAEKQVADVAAALDGARAILVERFAEDADLIGALREEMW 185
           LAD LLTQP+NDP  AA PFV+A+KQVAD AAALDGARAILVERFAEDADLIG LRE+MW
Sbjct: 125 LADLLLTQPQNDPQTAALPFVDADKQVADAAAALDGARAILVERFAEDADLIGGLREQMW 184

Query: 186 SNGIMASTVRTGKKTEGEKFKDYFDFSEPLPKLPSHRILALFRGEKEEILDLAIKPEAQE 245
           SNG++AS +R GKK  G KF DYFDFSEPL KLPSHRILA+FRGEKEE+LDL + PE   
Sbjct: 185 SNGLLASKLRDGKKEAGAKFADYFDFSEPLNKLPSHRILAMFRGEKEEVLDLQMLPE--- 241

Query: 246 PVVGQPGL---YELKIMNRFAISNQGRKGDKWLTETVRWAWRTKIQIHLNIDLRLRLWTA 302
           PV   P     YE +IM RF+IS+Q R GDKWL ETVRWAWRTKIQ+HLNIDLRLRLWTA
Sbjct: 242 PVPATPAAVSSYEFRIMQRFSISDQKRPGDKWLMETVRWAWRTKIQVHLNIDLRLRLWTA 301

Query: 303 AETEAVRVFASNLRDLLLAAPAGARATMGLDPGYRTGVKVAVIDATGKVVAHTAIFPHEP 362
           AE E VRVFASNLRDLLLAAPAGARATMGLDPGYRTGVKVAV+DATGKVVA TAIFPHEP
Sbjct: 302 AEQEGVRVFASNLRDLLLAAPAGARATMGLDPGYRTGVKVAVVDATGKVVATTAIFPHEP 361

Query: 363 QRRWDEALAVLGKLAIEHGVELIAIGNGTASRETDKLAAELVKRLPERKMTKIVVSEAGA 422
           QRRWDEALA+LGKLA EH VELIAIGNGTASRETDKLA ELVK LPE KM+KIVVSEAGA
Sbjct: 362 QRRWDEALAILGKLAREHRVELIAIGNGTASRETDKLATELVKLLPELKMSKIVVSEAGA 421

Query: 423 SVYSASAFASNELPDLDVTIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDLGESKLA 482
           SVYSASAFAS ELP+LDVT+RGAVSIARRLQDPLAELVKIDPK+IGVGQYQHDLGE+KL+
Sbjct: 422 SVYSASAFASEELPELDVTLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDLGEAKLS 481

Query: 483 RSLDAVVEDCVNAVGVDANTASVPLLARVSGIGQGLAQSIVQHRDANGPFKSRKALKEVP 542
           RSLDAVVEDCVNAVGVDANTAS PLLARVSGIG GLAQSIVQHRDANGPFKSRKALK+VP
Sbjct: 482 RSLDAVVEDCVNAVGVDANTASAPLLARVSGIGSGLAQSIVQHRDANGPFKSRKALKDVP 541

Query: 543 RLGPKAFEQCAGFLRISNGEDPLDSSGVHPEAYPVVRRILEATKSDIKALIGDADVVRGL 602
           RLGPKAFEQCAGFLRI+ GEDPLD+SGVHPE+YPVVRRIL ATKSDIKALIG++D +R L
Sbjct: 542 RLGPKAFEQCAGFLRITGGEDPLDASGVHPESYPVVRRILTATKSDIKALIGNSDALRQL 601

Query: 603 KPQSFVDDTFGLPTVTDILRELEKPGRDPRPAFKAAVFKEGVEEVKDLKKGMILEGTVTN 662
           KPQ+FVDDTFGLPTVTDILRELEKPGRDPRPAFKAAVFK+GVE+V DLK GM+LEG VTN
Sbjct: 602 KPQAFVDDTFGLPTVTDILRELEKPGRDPRPAFKAAVFKDGVEKVSDLKPGMVLEGAVTN 661

Query: 663 VAAFGAFVDIGVHQDGLVHISAMSRNFIKDPREVVKPGDIVKVKVLDVEVARKRIALTLR 722
           VAAFGAFVD+GVHQDGLVHISAMSR+FIKDPREVVKPGDIV+VKVL+V+V R+RIALTLR
Sbjct: 662 VAAFGAFVDVGVHQDGLVHISAMSRSFIKDPREVVKPGDIVRVKVLEVDVPRQRIALTLR 721

Query: 723 LDDEIGPKKDNAAPS--RDFSRGKMTSSAPRRPQEQSGGS 760
           LDDEIG K D  A +  R  SR   +S+  +R   Q+G S
Sbjct: 722 LDDEIGAKPDRGARNEPRSNSRAPSSSTPAQRKPAQAGTS 761


>ref|NP_773920.1| hypothetical protein bll7280 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52545.1| bll7280 [Bradyrhizobium japonicum USDA 110]
          Length = 786

 Score = 1233 bits (3190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/775 (82%), Positives = 692/775 (89%), Gaps = 4/775 (0%)

Query: 3   VAKIHHQIAQELGVRDEQVEAAVTLLDGGATVPFIARYRKELTGALDDAQLRTLEERLTY 62
           VA I+ +IAQELGVR EQVEAAVTLLDGGATVPFIARYRKE TGALDDAQLRTLEERL Y
Sbjct: 9   VANINQKIAQELGVRAEQVEAAVTLLDGGATVPFIARYRKEATGALDDAQLRTLEERLGY 68

Query: 63  LRELEERRTAVLNSIREQGKLDAALEAQIMAADSKGRLEDIYLPYKPKRRTKAEIAKEAG 122
           LRELE+RR A+L SIREQGKLDAALEA IMAADSK RLEDIYLP+KPKRRTKAEIAKEAG
Sbjct: 69  LRELEDRRKAILESIREQGKLDAALEATIMAADSKARLEDIYLPFKPKRRTKAEIAKEAG 128

Query: 123 LEPLADQLLTQPENDPNEAATPFVNAEKQVADVAAALDGARAILVERFAEDADLIGALRE 182
           LEPLA+QL+ +P NDP   A  F+NAEK VAD AAALDGARAILVERF EDADLIGALRE
Sbjct: 129 LEPLANQLMAEPGNDPKVVAESFINAEKGVADAAAALDGARAILVERFDEDADLIGALRE 188

Query: 183 EMWSNGIMASTVRTGKKTEGEKFKDYFDFSEPLPKLPSHRILALFRGEKEEILDLAIKPE 242
           EMW+N  MAS VR GKKTEGEKF DYF+FSEPL +LPSHRILA+FRGEKEEILDL I+ E
Sbjct: 189 EMWTNARMASKVRDGKKTEGEKFADYFEFSEPLTRLPSHRILAMFRGEKEEILDLQIQAE 248

Query: 243 AQEPVVGQPGLYELKIMNRFAISNQGRKGDKWLTETVRWAWRTKIQIHLNIDLRLRLWTA 302
           A+ P  G P  YELKIM RF I++  R GD+WL +TVRWAWRTKIQ+HLNIDLR+RLW A
Sbjct: 249 AEAPPPGVPSAYELKIMKRFGIADLKRAGDRWLIDTVRWAWRTKIQVHLNIDLRMRLWNA 308

Query: 303 AETEAVRVFASNLRDLLLAAPAGARATMGLDPGYRTGVKVAVIDATGKVVAHTAIFPHEP 362
           AETEAVRVFASNLRDLLLAAPAG R TMGLDPGYRTGVKVAV DATGKVV    I+PHEP
Sbjct: 309 AETEAVRVFASNLRDLLLAAPAGTRVTMGLDPGYRTGVKVAVTDATGKVVDTAVIYPHEP 368

Query: 363 QRRWDEALAVLGKLAIEHGVELIAIGNGTASRETDKLAAELVKRLPERKMTKIVVSEAGA 422
           QR+W+E+LA+LGKLA++H VELIAIGNGTASRETDKLA +LVK L E KM KIVVSEAGA
Sbjct: 369 QRQWNESLAILGKLALKHRVELIAIGNGTASRETDKLAGDLVKGLAELKMNKIVVSEAGA 428

Query: 423 SVYSASAFASNELPDLDVTIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDLGESKLA 482
           SVYSASAFAS ELP LDVT+RGAVSIARRLQDPLAELVKI+PKAIGVGQYQHDLG++KLA
Sbjct: 429 SVYSASAFASEELPGLDVTLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDLGQAKLA 488

Query: 483 RSLDAVVEDCVNAVGVDANTASVPLLARVSGIGQGLAQSIVQHRDANGPFKSRKALKEVP 542
           +SLDAVVEDCVNAVGVD NTAS PLLARVSG+G GLAQSIV HRDANGPFKSRK+LK+VP
Sbjct: 489 KSLDAVVEDCVNAVGVDVNTASAPLLARVSGVGSGLAQSIVAHRDANGPFKSRKSLKDVP 548

Query: 543 RLGPKAFEQCAGFLRISNGEDPLDSSGVHPEAYPVVRRILEATKSDIKALIGDADVVRGL 602
           RLGPKAFEQCAGFLRI  GEDPLD+SGVHPEAYPVVRRIL ATKSDIKALIG +++VR L
Sbjct: 549 RLGPKAFEQCAGFLRILGGEDPLDASGVHPEAYPVVRRILAATKSDIKALIGSSEIVRTL 608

Query: 603 KPQSFVDDTFGLPTVTDILRELEKPGRDPRPAFKAAVFKEGVEEVKDLKKGMILEGTVTN 662
           KP+ FVD+TFGLPTVTDILRELEKPGRDPRPAFKAAVFKEGVEE+K L+KGMILEGTVTN
Sbjct: 609 KPKDFVDETFGLPTVTDILRELEKPGRDPRPAFKAAVFKEGVEEIKHLQKGMILEGTVTN 668

Query: 663 VAAFGAFVDIGVHQDGLVHISAMSRNFIKDPREVVKPGDIVKVKVLDVEVARKRIALTLR 722
           VAAFGAFVDIGVHQDGLVHISAMS+ FIKDPREVVKPGDIVKVKVLD EVARKRI+LTLR
Sbjct: 669 VAAFGAFVDIGVHQDGLVHISAMSKTFIKDPREVVKPGDIVKVKVLDFEVARKRISLTLR 728

Query: 723 LDDEIGPKKDNAAPSRDF---SRGKMTSSAPRRPQEQSGGSALADALRRAAEKSG 774
           LDDE+G KKD     RD    +  +MTSSAPR+ QE SGG ALA+ALRRAAEKSG
Sbjct: 729 LDDEVGAKKDAPGMQRDNGSRNAARMTSSAPRK-QESSGGGALAEALRRAAEKSG 782


>ref|YP_779354.1| RNA-binding S1 domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gb|ABJ04374.1| RNA binding S1 domain protein [Rhodopseudomonas palustris BisA53]
          Length = 784

 Score = 1204 bits (3115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/782 (80%), Positives = 694/782 (88%), Gaps = 7/782 (0%)

Query: 3   VAKIHHQIAQELGVRDEQVEAAVTLLDGGATVPFIARYRKELTGALDDAQLRTLEERLTY 62
           +A I+ +IA ELGVR++QV A V LLDGGATVPF+ARYRKE+TGALDDAQLRTLEERLTY
Sbjct: 1   MATINQRIADELGVREQQVAATVELLDGGATVPFVARYRKEVTGALDDAQLRTLEERLTY 60

Query: 63  LRELEERRTAVLNSIREQGKLDAALEAQIMAADSKGRLEDIYLPYKPKRRTKAEIAKEAG 122
           LRELEERRT++LNS+REQGKLDAALEA I+AADSKGRLEDIYLPYKPKRRTKAEIA+EAG
Sbjct: 61  LRELEERRTSILNSVREQGKLDAALEAAILAADSKGRLEDIYLPYKPKRRTKAEIAREAG 120

Query: 123 LEPLADQLLTQPENDPNEAATPFVNAEKQVADVAAALDGARAILVERFAEDADLIGALRE 182
           L+PLAD LL+ P+ DP  AA  ++N +KQVAD AAALDGARAILVE+FAEDADLIG+LRE
Sbjct: 121 LQPLADLLLSDPQTDPQAAAATYINPDKQVADAAAALDGARAILVEQFAEDADLIGSLRE 180

Query: 183 EMWSNGIMASTVRTGKKTEGEKFKDYFDFSEPLPKLPSHRILALFRGEKEEILDLAIKPE 242
            MWS+G+M S +RTGKK  G KF DYFDFSEPL KLPSHRILA+FRGEKEEILDL I PE
Sbjct: 181 RMWSSGVMTSKLRTGKKEAGAKFADYFDFSEPLTKLPSHRILAMFRGEKEEILDLQILPE 240

Query: 243 AQEP---VVGQP-GLYELKIMNRFAISNQGRKGDKWLTETVRWAWRTKIQIHLNIDLRLR 298
              P   V   P G +EL+IMNRF +S++GR  D+WL +T RWAWRTKIQ+HLNIDLR++
Sbjct: 241 PVAPGPAVSPAPLGSFELQIMNRFQLSDRGRPADRWLIDTARWAWRTKIQVHLNIDLRMK 300

Query: 299 LWTAAETEAVRVFASNLRDLLLAAPAGARATMGLDPGYRTGVKVAVIDATGKVVAHTAIF 358
           LWTAAE EAVRVFASNLRDLLLAAPAGAR TMGLDPGYRTGVKVAV+DATGKVVA TAIF
Sbjct: 301 LWTAAEQEAVRVFASNLRDLLLAAPAGARVTMGLDPGYRTGVKVAVVDATGKVVATTAIF 360

Query: 359 PHEPQRRWDEALAVLGKLAIEHGVELIAIGNGTASRETDKLAAELVKRLPERKMTKIVVS 418
           PHEPQRRWDEALA+LGKLA EH VELIAIGNGTASRETDKLA ELVK LP+ KM+KIVVS
Sbjct: 361 PHEPQRRWDEALAILGKLAREHHVELIAIGNGTASRETDKLATELVKLLPDLKMSKIVVS 420

Query: 419 EAGASVYSASAFASNELPDLDVTIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDLGE 478
           EAGASVYSASAFAS ELP+LDVT+RGAVSIARRLQDPLAELVKIDPK+IGVGQYQHDLGE
Sbjct: 421 EAGASVYSASAFASEELPELDVTLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDLGE 480

Query: 479 SKLARSLDAVVEDCVNAVGVDANTASVPLLARVSGIGQGLAQSIVQHRDANGPFKSRKAL 538
           +KL+RSLDAVVEDCVNAVGVDANTAS PLLARVSGIG GLAQSIVQHRDANG F+SR  L
Sbjct: 481 AKLSRSLDAVVEDCVNAVGVDANTASAPLLARVSGIGTGLAQSIVQHRDANGRFESRAQL 540

Query: 539 KEVPRLGPKAFEQCAGFLRISNGEDPLDSSGVHPEAYPVVRRILEATKSDIKALIGDADV 598
           K+VPRLGPKAFEQCAGFLRI+ G+DPLD+SGVHPEAYPVVRRILEATKSDIKA+IG+AD+
Sbjct: 541 KKVPRLGPKAFEQCAGFLRIAGGKDPLDASGVHPEAYPVVRRILEATKSDIKAVIGNADL 600

Query: 599 VRGLKPQSFVDDTFGLPTVTDILRELEKPGRDPRPAFKAAVFKEGVEEVKDLKKGMILEG 658
           +R ++P+ FVD+ FGLPTVTDILRELEKPGRDPRPAFKAA FKEGVE +KDLK GMILEG
Sbjct: 601 LRQVRPKDFVDEHFGLPTVTDILRELEKPGRDPRPAFKAAEFKEGVETLKDLKVGMILEG 660

Query: 659 TVTNVAAFGAFVDIGVHQDGLVHISAMSRNFIKDPREVVKPGDIVKVKVLDVEVARKRIA 718
            VTNVAAFGAFVDIGVHQDGLVHISAMS+ FIKDPREVVKPGDIVKVKVL+V+VARKRIA
Sbjct: 661 AVTNVAAFGAFVDIGVHQDGLVHISAMSKTFIKDPREVVKPGDIVKVKVLEVDVARKRIA 720

Query: 719 LTLRLDDEIGPKKDNAAPSRDFS--RGKMTSSAPRRPQEQSGGSALADALRRAAEKSGRG 776
           LTLRLDDE+G K D   P R  S  RG M S+AP  P + +GG A A+A  RA EK+  G
Sbjct: 721 LTLRLDDEVGAKSDR-KPDRGASAPRGPMRSAAPATPGKPAGGGAFAEAFARATEKAPNG 779

Query: 777 KP 778
           KP
Sbjct: 780 KP 781