BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0099.0009.p (522 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207769.1| hypothetical protein BRADO5888 [Bradyrhizobi... 774 0.0 ref|YP_001833107.1| hypothetical protein Bind_1995 [Beijerinckia... 402 e-110 ref|YP_002363675.1| hypothetical protein Msil_3415 [Methylocella... 393 e-107 ref|YP_745257.1| putative cytoplasmic protein [Granulibacter bet... 326 6e-87 ref|ZP_06889701.1| conserved hypothetical protein [Methylosinus ... 325 2e-86 >ref|YP_001207769.1| hypothetical protein BRADO5888 [Bradyrhizobium sp. ORS 278] emb|CAL79552.1| hypothetical protein BRADO5888 [Bradyrhizobium sp. ORS 278] Length = 488 Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/492 (73%), Positives = 417/492 (84%), Gaps = 4/492 (0%) Query: 31 LKTRLKQLEQKMETQARKEEALAARQNAIQNAQMTAKAPVPFDPCASGKLCYKGVTFTFG 90 ++ RLKQ+E +++ + K +ALAA + + T K P+P +PC GK CYKGVTFTFG Sbjct: 1 MRARLKQIESRVDAEIHKRQALAAEASHMS---PTGKVPLP-EPCEPGKFCYKGVTFTFG 56 Query: 91 GWVDLTGIYRSRNLASDSGSVYNFIPFPQSKNYNTGESRFTARQTRFSVLAEANATENVH 150 GWVDLTGIYRSRNLASD+GSVYNFIP+PQ++N+NT E+RF+ARQ+RFSVLA N + H Sbjct: 57 GWVDLTGIYRSRNLASDTGSVYNFIPYPQARNFNTPEARFSARQSRFSVLAAGNVDPDTH 116 Query: 151 VAGYGELDFEGAAQTANSVATNSFNPRLRQASIEIDRSDLGLHVLAGQSWSLNTPSKAGI 210 +AGYGE+DFEGAAQTANSVATNSFNPR+RQ S+E+DRSDLG H LAGQSWSLN PSKAGI Sbjct: 117 LAGYGEIDFEGAAQTANSVATNSFNPRMRQLSLELDRSDLGFHFLAGQSWSLNAPSKAGI 176 Query: 211 DPRGADTPGVIDFELVPGFIGARQPGVRAWQDIGPEFKLAVSAENPQTSFFGGNNPLVGT 270 DPRG D PGVIDFE VPGF+ RQPG+R W+D+GPEFK+A S ENPQT+FFGGN P VGT Sbjct: 177 DPRGVDAPGVIDFESVPGFLAVRQPGLRIWKDLGPEFKVAASVENPQTAFFGGNTPAVGT 236 Query: 271 PAVGPQGVLNPNLLVNLTGPGGSFFNSLNNVSLNHVPDITVKGAWDPRLGPYKLHVEAWA 330 PAVGPQGVLNPNL VNLTGPGGSFFNSLNNVSLN VPD+TVK AWDPRLGPY+LHVEAW Sbjct: 237 PAVGPQGVLNPNLQVNLTGPGGSFFNSLNNVSLNQVPDVTVKAAWDPRLGPYRLHVEAWG 296 Query: 331 LYRDFYDRFNFANHDVNTVSFGGHLSAEIVPKLLEVQASASYGALGRFTATPFPDATVRQ 390 LYR +DRFN ANH +T SFGGH++AE++ K LE+Q S G LGRFTATPFPDATV Q Sbjct: 297 LYRQLFDRFNSANHAYDTGSFGGHINAELILKTLELQLYGSQGVLGRFTATPFPDATVAQ 356 Query: 391 DGSIQPLPITAFLVGSVWHTTPSLDLYAYAGLEKTKATFSNVGTVPFGYGNPLYNNLGCN 450 DG++ PL ITA G +WHTTPSLDLY YAGLEK KA F+NVGTVPFGYGNPLYNN GCN Sbjct: 357 DGTLLPLTITAAAAGLIWHTTPSLDLYTYAGLEKAKAAFANVGTVPFGYGNPLYNNTGCN 416 Query: 451 IENSPAATCNGNTSEVRQYTAGFYDTIFKGSYGTIKAGAQYSYTQRFAFQGVGGAPKTDD 510 IENSPAATCNGNT EVRQ TAGFY+T+++G++G +KAG QYS+TQRFAF GVGGAPKTDD Sbjct: 417 IENSPAATCNGNTREVRQMTAGFYETVYQGNFGALKAGLQYSFTQRFAFPGVGGAPKTDD 476 Query: 511 HIVMTQIRYYPF 522 ++VM QIRYYPF Sbjct: 477 NVVMAQIRYYPF 488 >ref|YP_001833107.1| hypothetical protein Bind_1995 [Beijerinckia indica subsp. indica ATCC 9039] gb|ACB95618.1| conserved hypothetical protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 572 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 234/552 (42%), Positives = 315/552 (57%), Gaps = 52/552 (9%) Query: 14 LSAGPALAEDDASELRAL----------KTRLKQLEQKMETQARKE-------------- 49 L A P A+D A+E+RAL K RLK+LE+K+ QA E Sbjct: 30 LHALPVKADDMAAEIRALKKKLEDFDVIKARLKELEEKVNGQASHEHKTHIVHVHERPQP 89 Query: 50 -EALAARQNAIQNAQMTAKAP-------VPF-DPCASGKLC------YKGVTFTFGGWVD 94 AA QN + + P VP P +L + G+ T GG+VD Sbjct: 90 VHGTAAPQNEASAQHVHIRDPFGAAHERVPVTTPLPINQLSGHYTFDFNGIRVTPGGYVD 149 Query: 95 LTGIYRSRNLASDSGSVYNFIPFPQSKNYNTGESRFTARQTRFSVLAEANATENVHVAGY 154 L G++RS+NLASD + +N IP+ +T E R ++RQ+R S+L EAN + H+A Y Sbjct: 150 LDGVFRSKNLASDIATPFNAIPYGNIPLGHTREFRGSSRQSRASILIEANVSPVTHLAAY 209 Query: 155 GELDFEGAAQTANSVATNSFNPRLRQASIEIDRSDLGLHVLAGQSWSLNTPSKAGIDPRG 214 GE DF A QTAN+ +NSF+PR+R +D DLGLH+LAGQSWSL T + GI PR Sbjct: 210 GEFDFLAAPQTANTNESNSFSPRIRNLYGTVDWGDLGLHLLAGQSWSLATINHNGIMPRD 269 Query: 215 ADTPGVIDFELVPGFIGARQPGVRAWQDI-GPEFKLAVSAENPQTSFFG-GNNPLVGTPA 272 P ID VPGF+ RQP +R +++ E ++ S ENP T+F+ G+ P P Sbjct: 270 EYLPQTIDVGYVPGFVWTRQPQLRLTKELMNKELWISASLENPATTFYNVGSTPWGTAP- 328 Query: 273 VGPQGVLNPNLLVNLTGPGGSFFNSLNNVSLNHVPDITVKGAWDPRLGPYKLHVEAWALY 332 L P LL GGS F++ N +S+NHVPDI K A++P + K H+E + +Y Sbjct: 329 ------LPPTLLYMTQ--GGSLFDAQNQMSINHVPDIIGKIAYEPTVFDRKTHMELFGIY 380 Query: 333 RDFYDRFNFANHDVNTVSFGGHLSAEIVPKLLEVQASASYG-ALGRFTATPFPDATVRQD 391 RD Y R FANHDV GG L I+PK L +Q S G +GR+ + PDAT+ + Sbjct: 381 RDIYTRNQFANHDVAAGGIGGSLIFPIIPKTLNLQLSGLTGTGIGRYGSALLPDATIDPN 440 Query: 392 GSIQPLPITAFLVGSVWHTTPSLDLYAYAGLEKTKATFSNVGT-VPFGYGNPLYNNLGCN 450 G++ P+P T G W T LDLY Y G E +AT++ + + +GYGNPLY+N GC+ Sbjct: 441 GAVSPIPETILFAGLTWSPTSKLDLYGYGGEEFERATYATTASGLAYGYGNPLYDNRGCS 500 Query: 451 IENSPAATCNGNTSEVRQYTAGFYDTIFKGSYGTIKAGAQYSYTQRFAFQGVGGAPKTDD 510 E +P+ TCNGNT +RQ T G +D I+ G +G +K G QYSYTQRF F G+GGAPKTD+ Sbjct: 501 TEGAPSTTCNGNTKLIRQITGGLWDHIYDGPFGHLKFGMQYSYTQRFGFVGIGGAPKTDE 560 Query: 511 HIVMTQIRYYPF 522 HI +T +RYYPF Sbjct: 561 HIFLTSLRYYPF 572 >ref|YP_002363675.1| hypothetical protein Msil_3415 [Methylocella silvestris BL2] gb|ACK52313.1| conserved hypothetical protein [Methylocella silvestris BL2] Length = 549 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/534 (42%), Positives = 308/534 (57%), Gaps = 38/534 (7%) Query: 19 ALAEDDASELRALKTRLKQLEQKMETQARKE-----EALAARQN--AIQNAQMTAKAPVP 71 A A+D + E+RALK +LK+LE K+E QA+K+ E R + A+ N A + P Sbjct: 24 ARADDTSDEIRALKAQLKRLETKVEQQAQKQKQTQVEIHEVRTHPAAVANGATPAVSIAP 83 Query: 72 FDPCASG------------------KLCYKGVTFTFGGWVDLTGIYRSRNLASDSGSVYN 113 A G L GV+ T GG++ L G++R R + +D G+ + Sbjct: 84 LGGPAPGAIVATESAIRGLPVAGAPSLYINGVSITPGGFIALEGVFRDRFIGADIGTPFQ 143 Query: 114 FIPFPQSKNYNTGESRFTARQTRFSVLAEANATENVHVAGYGELDFEGAAQTANSVATNS 173 IPF ++ N E R +ARQ+R +VL E + H+A + E+DF GAAQTANS +NS Sbjct: 144 NIPFGNVRSGNANEFRMSARQSRVNVLVEGSVNPTTHLAAFVEMDFLGAAQTANSNESNS 203 Query: 174 FNPRLRQASIEIDRSDLGLHVLAGQSWSLNTPSKAGIDPRGADTPGVIDFELVPGFIGAR 233 FNPR+R +D+ D G H+LAGQSWSL T + GI PR + P ID + VPGF+ AR Sbjct: 204 FNPRIRHLYATVDQDDFGAHLLAGQSWSLVTMNAKGIIPRQENLPLQIDAQYVPGFVWAR 263 Query: 234 QPGVRAWQDIGPEFKLAVSAENPQTSFFGGNNPLVGTPAVGPQGVLNPNLLVNLTGPGGS 293 P +R +D F A+S ENPQT+ FGG + T A P L+ N+ PGGS Sbjct: 264 NPQIRIVKDFDKTFWAALSVENPQTT-FGGFTTVGATAATLPS-----TLVYNVAPPGGS 317 Query: 294 FFNSLNNVSLNHVPDITVKGAWDPRLGPYKLHVEAWALYRDFYDRFNFANHDVNTVSFGG 353 FNSLN VSLNH+PDI K AWD + + +H+E + L+RDFY + N +N D GG Sbjct: 318 LFNSLNAVSLNHMPDIIGKAAWDTAVDGHNIHLEGFGLFRDFYSQVNNSNQDTPGWGTGG 377 Query: 354 HLSAEIVPKLLEVQASASYG-ALGRFTATPFPDATVRQDGSIQPLPITAFLVGSVWHTTP 412 ++PK LE Q S G +GR+ + PD T +G+I P+P T L G VWH T Sbjct: 378 SALVSLLPKQLEAQFSGMTGRGIGRYGSAQLPDVTFNWNGTIDPIPETMLLAGLVWHPTS 437 Query: 413 SLDLYAYAGLEKTKATFSNVGT----VPFGYGNPLYNNLGCNIENSPAATCNGNTSEVRQ 468 LDLYAY G E ATFS T FG GNPL++N GC++ S CNGN +RQ Sbjct: 438 DLDLYAYGGEEFQTATFSTTQTGAAVNAFGLGNPLFSNAGCSVPGS--TVCNGNIHLIRQ 495 Query: 469 YTAGFYDTIFKGSYGTIKAGAQYSYTQRFAFQGVGGAPKTDDHIVMTQIRYYPF 522 T GF+ I++G++G ++AG QYS+TQ+++FQG+GG K +++ + IRYYPF Sbjct: 496 LTGGFWQKIYQGAFGQLRAGLQYSFTQKYSFQGIGGGAKAQENMGLFSIRYYPF 549 >ref|YP_745257.1| putative cytoplasmic protein [Granulibacter bethesdensis CGDNIH1] gb|ABI62334.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1] Length = 632 Score = 326 bits (836), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 200/522 (38%), Positives = 280/522 (53%), Gaps = 51/522 (9%) Query: 36 KQLEQKMETQARKEEALAARQNAIQN---------AQMTAKAPVPFDPCASGKLCYKG-- 84 ++ +Q ET R E A +A+ +T +P +D S +L G Sbjct: 126 QEAKQAQETAIRSEAAARQATHALDMQPAGNLGSIVGITRSSPA-YDSATSAQLADGGKT 184 Query: 85 --------VTFTFGGWVDLTGIYRSRNLASDSGSVYNFIPFPQSKNYNTGESRFTARQTR 136 VT T GG+++ ++R+ + +D S +N IPF + N E R TARQ+R Sbjct: 185 QGALRLGPVTITVGGFIEAASVFRTTSEGADIASSWNGIPFRNNVAGNLSEFRETARQSR 244 Query: 137 FSVLAEANATENVHVAGYGELDFEGAAQTANSVATNSFNPRLRQASIEIDRSDLGLHVLA 196 S+LA+++ + H+A Y E DF GAA TANS +NS+NPRLR + IDRSD+GLH+LA Sbjct: 245 VSLLAQSDVGKYTHLAAYLESDFLGAAPTANSTESNSYNPRLRHGYLTIDRSDMGLHLLA 304 Query: 197 GQSWSLNTPSKAGIDPRGADTPGVIDFELVPGFIGARQPGVRAWQDI-GPEFKLAVSAEN 255 GQ+WSL T S + I PR TP ID + VPGF+ RQP +R W+ + +A+ EN Sbjct: 305 GQTWSLLTQSTSEITPRKELTPFTIDAQYVPGFVWTRQPQIRLWKTLDNHRVNIAMGLEN 364 Query: 256 PQTSFFGGNNPLVGTPAVGPQGVLNPNLLVNLTGPGGSFFNSLNNVSLNHVPDITVKGAW 315 PQTS + G N + L V GGS + NN SL+ PDIT K A+ Sbjct: 365 PQTSMYVGPNQVTTAGQSATDTALG-GATVTYAQAGGSGYAGTNNYSLDPAPDITAKVAF 423 Query: 316 DPRLGPYKLHVEAWALYRDFYDRFNFANHDVNTVSFGGHLSAEIVP-------------- 361 DP G Y+L F A V++ G ++++VP Sbjct: 424 DPGYGHYEL--------------FGVARFLRTHVTYNGSGTSQVVPAGGGGASFVIPMFN 469 Query: 362 KLLEVQASASYGA-LGRFTATPFPDATVRQDGSIQPLPITAFLVGSVWHTTPSLDLYAYA 420 K + +Q + G +GR+ ++ PDAT+ ++G PLP +VG V H PSLDLYAY Sbjct: 470 KKVTLQGNFLAGVGIGRYGSSQLPDATLGRNGDPVPLPEVMAMVGVVGHPRPSLDLYAYV 529 Query: 421 GLEKTKATFSNVGTVPFGYGNPLYNNLGCNIENSPAATCNGNTSEVRQYTAGFYDTIFKG 480 G E+ + + +GYG+PLY+N+GC+IE + A TC GNTS + Q T GF+ KG Sbjct: 530 GTEQEGSRSYSANGKGYGYGSPLYSNVGCSIEGAAAGTCVGNTSGIVQGTTGFWWRALKG 589 Query: 481 SYGTIKAGAQYSYTQRFAFQGVGGAPKTDDHIVMTQIRYYPF 522 YGT++ G QYSYT+R AF+G+GG+P HI M IRYYPF Sbjct: 590 PYGTVQTGLQYSYTERTAFKGLGGSPVAHAHIAMFSIRYYPF 631 >ref|ZP_06889701.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] gb|EFH01819.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] Length = 509 Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 209/514 (40%), Positives = 289/514 (56%), Gaps = 30/514 (5%) Query: 26 SELRALKTRLKQLEQKMETQARKEEALAARQNAIQNAQMTAKAPVPFDPCASGKLCYKGV 85 +E+R LK + LE +++ Q ++A Q+A + A T K+ P P + KL GV Sbjct: 9 AEIRELKAKQHALESRLDKQ---QKAPPQHQHADRGAVKTVKSDPP-APVSLDKL--PGV 62 Query: 86 TFTFGGWVDLTGIYRSRNLASDSGSVYNFIPFPQSKNYNTGESRFTARQTRFSVLAEANA 145 T T GG+ +YR+ + SD + IPF + +T E RF+ARQ+R S+ A+ + Sbjct: 63 TLTPGGFFAAESVYRTHWMGSDIVEGFQNIPFANNPAGHTDEFRFSARQSRLSLRADGDV 122 Query: 146 TENVHVAGYGELDFEGAAQTANSVATNSFNPRLRQASIEIDRSDLGLHVLAGQSWSLNTP 205 + H+ GY E+DF GAAQTANS T+S+NPR+RQ +D ++ LH LAGQ+W+L T Sbjct: 123 DPSTHLTGYVEIDFLGAAQTANSNQTSSYNPRIRQLYTSLDLNEFDLHFLAGQAWTLATT 182 Query: 206 SKAGIDPRGADTPGVIDFELVPGFIGARQPGVRAWQDIGPEFKLAVSAENPQTSFFGGNN 265 + GI P TP ID + +PGF+ ARQPG+R ++ G EF +A +AE T+ Sbjct: 183 NSNGIKPETILTPPQIDAQYIPGFVFARQPGLRITKNFGKEFSVAFAAEEAATT------ 236 Query: 266 PLVGTPAVGPQGVLNPNLL------VNLTGP-GGSFFNSLNNVSLNHVPDITVKGAWDPR 318 PA G N L + ++ P GG +NS NN S N +PD+ K AWDP Sbjct: 237 -FAAVPANVAPGFTNVATLPGGGVPLVVSAPLGGGLYNSSNNYSFNRMPDLIAKVAWDPT 295 Query: 319 LGPYKLHVEAWALYRDFYDRFNFANHDVNTVSFGGHLSAEIVPKLLEVQASASYG-ALGR 377 + +HVE + L RDF R NH V G + +VPKLL+ Q S + G +GR Sbjct: 296 ILDRHIHVEGFGLLRDFTSRAYLGNHSVWAGGGGASVIVPVVPKLLDFQVSGAIGHGIGR 355 Query: 378 FTATPFPDATVRQDGSIQPLPITAFLVGSVWHTTPSLDLYAYAGLEKTKA--TFSNV--G 433 + A+ PDAT G+ P+ L+G++ H TP D+YA+AG E + A F V Sbjct: 356 YGASGLPDATTSITGAPLPIQQRMLLIGAIGHVTPQTDVYAFAGGEFSSAQPQFETVGGT 415 Query: 434 TVPFGYGNPLYNNLGCNIENS---PAA--TCNGNTSEVRQYTAGFYDTIFKGSYGTIKAG 488 T GYGN Y+N GC IENS PAA C G T VRQ T GF+ T++ GS+G KAG Sbjct: 416 TYAGGYGNWAYDNSGCGIENSGLLPAALTVCAGQTKSVRQLTGGFWHTLYSGSFGKFKAG 475 Query: 489 AQYSYTQRFAFQGVGGAPKTDDHIVMTQIRYYPF 522 QYSYT R FQG+GG+P+ + ++ T IRYYPF Sbjct: 476 VQYSYTVRDGFQGLGGSPQGRNSMIFTSIRYYPF 509