BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0099.0008.p (166 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_783803.1| hypothetical protein RPE_4904 [Rhodopseudomonas... 102 2e-20 ref|YP_486268.1| hypothetical protein RPB_2655 [Rhodopseudomonas... 98 3e-19 ref|YP_532229.1| hypothetical protein RPC_2357 [Rhodopseudomonas... 95 4e-18 ref|YP_534469.1| hypothetical protein RPC_4628 [Rhodopseudomonas... 94 6e-18 ref|NP_948089.1| hypothetical protein RPA2746 [Rhodopseudomonas ... 94 8e-18 >ref|YP_783803.1| hypothetical protein RPE_4904 [Rhodopseudomonas palustris BisA53] gb|ABJ08823.1| hypothetical protein RPE_4904 [Rhodopseudomonas palustris BisA53] Length = 189 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/147 (45%), Positives = 78/147 (53%), Gaps = 15/147 (10%) Query: 21 SRAAHVLQRTGLAMAGAMAGTFVAAQLAKGHVAVFGTLIFIATAIVIGAAGFYLGIDIPK 80 SR AHVL+R+GLAM GA G FVAA+LAK V V I + + GA G YLGID+P Sbjct: 23 SRLAHVLERSGLAMLGASGGLFVAARLAKTDVEVLTFPIIVLLLMAYGALGAYLGIDMPP 82 Query: 81 PAM--------RGTGRIDAVELMSAGGIFLAALAALVSVYGIVFDEIPPRAWEFVIGSWW 132 R R +E +S+GG FL ALAA VS+Y IV DE P AW IG W Sbjct: 83 QQCEASRADDDRAIARSRWIERLSSGGTFLGALAAFVSIYSIVVDENPHDAWTLSIGLAW 142 Query: 133 FGGGIMLATAGLVGR-------QRPVQ 152 G M AG+V R Q P Q Sbjct: 143 LLGVSMQIVAGVVARSGTASALQSPTQ 169 >ref|YP_486268.1| hypothetical protein RPB_2655 [Rhodopseudomonas palustris HaA2] gb|ABD07357.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 143 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/139 (44%), Positives = 76/139 (54%), Gaps = 10/139 (7%) Query: 20 VSRAAHVLQRTGLAMAGAMAGTFVAAQLAKGHVAVFGTLIFIATAIVIGAAGFYLGIDIP 79 V +AAH+L+RTGLAMAGA G FV A + + T+ F+ I +GA GFYLGIDIP Sbjct: 5 VRKAAHILERTGLAMAGAACGMFVGAHVGTS-IGALTTVAFLLAMIAVGAVGFYLGIDIP 63 Query: 80 K-PAMRGT--------GRIDAVELMSAGGIFLAALAALVSVYGIVFDEIPPRAWEFVIGS 130 P G GRID E +SA G F A LAA SV +V + P AW +I + Sbjct: 64 PLPFHAGESEAEHTERGRIDTAEFLSAVGTFCATLAAFASVSLVVLHQAPHLAWTAMILT 123 Query: 131 WWFGGGIMLATAGLVGRQR 149 W GG M AG + R R Sbjct: 124 GWLGGVTMQIVAGTIARSR 142 >ref|YP_532229.1| hypothetical protein RPC_2357 [Rhodopseudomonas palustris BisB18] gb|ABD87910.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 169 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/137 (45%), Positives = 80/137 (58%), Gaps = 9/137 (6%) Query: 21 SRAAHVLQRTGLAMAGAMAGTFVAAQLAKGHVAVFGTLIFIATAIVIGAAGFYLGIDIPK 80 S+ AHV++R GLAMAGA G FVAA + + +V + G+ ++ GA GFYLGID+P Sbjct: 28 SKWAHVMERIGLAMAGASCGLFVAANMIRTNVEM-GSGAAALAMLLFGAIGFYLGIDLPP 86 Query: 81 PAMRGTG--------RIDAVELMSAGGIFLAALAALVSVYGIVFDEIPPRAWEFVIGSWW 132 P R D+VEL SA G FL+ALAA++SVY IV DE A +IG W Sbjct: 87 PLHDPDAPPPPGHLARTDSVELFSATGTFLSALAAVISVYVIVVDERLHLAVVLLIGLAW 146 Query: 133 FGGGIMLATAGLVGRQR 149 G IM AG++ R R Sbjct: 147 LIGSIMQVAAGVIARVR 163 >ref|YP_534469.1| hypothetical protein RPC_4628 [Rhodopseudomonas palustris BisB18] gb|ABD90150.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 169 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/134 (41%), Positives = 73/134 (54%), Gaps = 5/134 (3%) Query: 21 SRAAHVLQRTGLAMAGAMAGTFVAAQLAKGHVAVFGTLIFIATAIVIGAAGFYLGIDIPK 80 SR AHVL+R+GLAM GA G FVAA L + V + + I ++ GFYLGID+P Sbjct: 35 SRLAHVLERSGLAMMGAAGGLFVAAHLGRASVEILTFPVVILAMMIYAIVGFYLGIDLPP 94 Query: 81 PA-----MRGTGRIDAVELMSAGGIFLAALAALVSVYGIVFDEIPPRAWEFVIGSWWFGG 135 A R T R+ +E +SA G F AALA VSV+ I+ D P W ++G + G Sbjct: 95 EAAQSADSRATSRVKWIERLSATGTFFAALAVFVSVWNIILDGHPHPLWTLLVGGGFVAG 154 Query: 136 GIMLATAGLVGRQR 149 M AG + R R Sbjct: 155 VTMQIAAGSIARAR 168 >ref|NP_948089.1| hypothetical protein RPA2746 [Rhodopseudomonas palustris CGA009] ref|YP_001992066.1| hypothetical protein Rpal_3085 [Rhodopseudomonas palustris TIE-1] emb|CAE28188.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gb|ACF01591.1| putative membrane protein of unknown function [Rhodopseudomonas palustris TIE-1] Length = 145 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/137 (44%), Positives = 77/137 (56%), Gaps = 8/137 (5%) Query: 20 VSRAAHVLQRTGLAMAGAMAGTFVAAQLAKGHVAVFGTLIFIATAIVIGAAGFYLGIDIP 79 V +AAH L+RTGLA+AGA GTFV A + A+ T+ F+ I +GA GFYLGIDIP Sbjct: 5 VRKAAHFLERTGLALAGAACGTFVGAHVGTSFAAL-TTIGFLLGMIALGAIGFYLGIDIP 63 Query: 80 KPAMRG-------TGRIDAVELMSAGGIFLAALAALVSVYGIVFDEIPPRAWEFVIGSWW 132 +G +G+IDA E +SA G FLA LAA SV +V W ++I W Sbjct: 64 PLPFQGADEDSNASGKIDAAEFLSAFGTFLATLAAFASVSAVVLRLNLHSVWSWLILIGW 123 Query: 133 FGGGIMLATAGLVGRQR 149 G M TAG + R R Sbjct: 124 LAGVTMQITAGTIARLR 140