BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0099.0006.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001205832.1| hypothetical protein BRADO3842 [Bradyrhizobi...    59   2e-07
ref|YP_001240060.1| hypothetical protein BBta_4088 [Bradyrhizobi...    58   4e-07
ref|YP_001240065.1| hypothetical protein BBta_4093 [Bradyrhizobi...    52   2e-05
ref|YP_001205826.1| hypothetical protein BRADO3836 [Bradyrhizobi...    49   3e-04
ref|NP_771531.1| hypothetical protein blr4891 [Bradyrhizobium ja...    47   8e-04

>ref|YP_001205832.1| hypothetical protein BRADO3842 [Bradyrhizobium sp. ORS 278]
 emb|CAL77607.1| hypothetical protein BRADO3842 [Bradyrhizobium sp. ORS 278]
          Length = 281

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 57/88 (64%), Gaps = 5/88 (5%)

Query: 24  LLQTIARDLANVERNIEQLKANQQQLARESSKAIEELKASQEEMKRALAKVSEQ-----K 78
           L+Q +ARD+A +++ IEQ+K+ Q Q +R+ ++AIE+L+A Q+++ R ++++S Q      
Sbjct: 170 LMQRMARDIAELQQGIEQIKSTQDQASRDHTRAIEQLQAGQDQLMRLVSRMSNQAVQARG 229

Query: 79  ASPPPAQPAPAVRKPERTSMPPYARARP 106
           A+ PP  P   +  P++ +    AR +P
Sbjct: 230 AAVPPGAPQQIIVTPQQRTTTGLARPQP 257


>ref|YP_001240060.1| hypothetical protein BBta_4088 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36154.1| hypothetical protein BBta_4088 [Bradyrhizobium sp. BTAi1]
          Length = 276

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 55/80 (68%), Gaps = 6/80 (7%)

Query: 22  TQLLQTIARDLANVERNIEQLKANQQQLARESSKAIEELKASQEEMKRALAKVSEQ---- 77
           T ++Q +ARD+A +++ IEQ+KA Q Q +R+ ++AIE+L+A Q+++ R ++++S Q    
Sbjct: 164 TTMMQRMARDIAELQQGIEQIKATQDQASRDHTRAIEQLQAGQDQLMRLVSRMSNQAAQA 223

Query: 78  KASPPPAQPAPAVRKPERTS 97
           + + PP Q    +  P+RT+
Sbjct: 224 RGTAPPQQ--QIIVNPQRTT 241


>ref|YP_001240065.1| hypothetical protein BBta_4093 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36159.1| hypothetical protein BBta_4093 [Bradyrhizobium sp. BTAi1]
          Length = 274

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 38/52 (73%)

Query: 20  DQTQLLQTIARDLANVERNIEQLKANQQQLARESSKAIEELKASQEEMKRAL 71
           D   LL  IARD+ +++  + +LKA+Q Q +R+ SKAIE+L+ASQ+++ RA 
Sbjct: 194 DLVPLLDKIARDVTDLQTGLRELKASQDQASRDHSKAIEQLQASQDQLARAF 245


>ref|YP_001205826.1| hypothetical protein BRADO3836 [Bradyrhizobium sp. ORS 278]
 emb|CAL77601.1| Conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 288

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 39/48 (81%)

Query: 24  LLQTIARDLANVERNIEQLKANQQQLARESSKAIEELKASQEEMKRAL 71
           L++ IA D+A ++  ++ LKA+Q+Q +R+ +KAIE+L+ASQ+++ RA+
Sbjct: 205 LIEKIAHDVAALQTGLQDLKASQEQASRDQAKAIEQLQASQDQLARAV 252


>ref|NP_771531.1| hypothetical protein blr4891 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50156.1| blr4891 [Bradyrhizobium japonicum USDA 110]
          Length = 343

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 5   APPQDAAPTANTALPDQTQLLQTIARDLANVERNIEQLKANQQQLARESSKAIEELKASQ 64
           A P+   P+A     + +Q  Q +ARDLA + + +EQLKA Q+QL R++     +LK S+
Sbjct: 160 AAPEAVVPSAVVLRSELSQQFQPMARDLAALSQTVEQLKARQEQLIRDNENLASQLKVSR 219

Query: 65  EEMKRALAKVSEQKA 79
           EE +R    + + KA
Sbjct: 220 EESERNNGIIFQIKA 234



 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 36  ERN---IEQLKANQQQLARESSKAIEELKASQEEMKRALAKVSEQKASP 81
           ERN   I Q+KA+Q Q+ARES    E L ASQ+++ R +A  S+ KA P
Sbjct: 223 ERNNGIIFQIKADQMQMARESQTLTERLNASQDQLARVIANASQPKAIP 271