BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0099.0001.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_317203.1| hypothetical protein Nwi_0584 [Nitrobacter wino...   161   3e-38
ref|ZP_01044561.1| hypothetical protein NB311A_03504 [Nitrobacte...   160   6e-38
ref|YP_576023.1| hypothetical protein Nham_0675 [Nitrobacter ham...   160   8e-38
ref|YP_783245.1| hypothetical protein RPE_4341 [Rhodopseudomonas...   157   6e-37
ref|YP_534125.1| hypothetical protein RPC_4282 [Rhodopseudomonas...   157   7e-37

>ref|YP_317203.1| hypothetical protein Nwi_0584 [Nitrobacter winogradskyi Nb-255]
 gb|ABA03851.1| chorismate mutase [Nitrobacter winogradskyi Nb-255]
          Length = 284

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/107 (78%), Positives = 94/107 (87%), Gaps = 4/107 (3%)

Query: 10  PAALPVFVISRVADDAMVTEVQTWSVRVSGWNADVARALAPLAEIVAVPDTAFDGAALLV 69
           PAALPVFVISRVADDA VTEV+TWSVRVSGWNA+ AR L+PLAEIVAVPDTAFDGAALLV
Sbjct: 179 PAALPVFVISRVADDARVTEVETWSVRVSGWNANTARTLSPLAEIVAVPDTAFDGAALLV 238

Query: 70  SVTGQDLTNKGFEAIKLALIKAGASVRSSALVGSHATRYTVPSNGSA 116
           S+TG    +   + IK ALI+AGASVRS+ALVGSHATRYT+PS+G A
Sbjct: 239 SITG----DTTLDTIKSALIEAGASVRSTALVGSHATRYTMPSSGGA 281


>ref|ZP_01044561.1| hypothetical protein NB311A_03504 [Nitrobacter sp. Nb-311A]
 gb|EAQ37342.1| hypothetical protein NB311A_03504 [Nitrobacter sp. Nb-311A]
          Length = 283

 Score =  160 bits (405), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 93/108 (86%), Gaps = 4/108 (3%)

Query: 10  PAALPVFVISRVADDAMVTEVQTWSVRVSGWNADVARALAPLAEIVAVPDTAFDGAALLV 69
           PAALPVFVISRVADDA VTEV+TWSVRVSGWNA+ AR L+PLAEIVAVPDTAFDGAALLV
Sbjct: 179 PAALPVFVISRVADDARVTEVETWSVRVSGWNANTARTLSPLAEIVAVPDTAFDGAALLV 238

Query: 70  SVTGQDLTNKGFEAIKLALIKAGASVRSSALVGSHATRYTVPSNGSAR 117
           S+TG        + IK ALI+AGASVRS+ALVGSHATRYT+PSN + R
Sbjct: 239 SITG----GTSLDTIKSALIEAGASVRSTALVGSHATRYTMPSNRADR 282


>ref|YP_576023.1| hypothetical protein Nham_0675 [Nitrobacter hamburgensis X14]
 gb|ABE61563.1| Chorismate mutase [Nitrobacter hamburgensis X14]
          Length = 297

 Score =  160 bits (404), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 95/109 (87%), Gaps = 4/109 (3%)

Query: 10  PAALPVFVISRVADDAMVTEVQTWSVRVSGWNADVARALAPLAEIVAVPDTAFDGAALLV 69
           PA LPVFV+SRVAD+A VTEV+TWSVRVSGWNAD ARAL+PLAEIVAVPDTAFDGAALLV
Sbjct: 193 PATLPVFVVSRVADNARVTEVETWSVRVSGWNADTARALSPLAEIVAVPDTAFDGAALLV 252

Query: 70  SVTGQDLTNKGFEAIKLALIKAGASVRSSALVGSHATRYTVPSNGSART 118
           SVTG        + IK AL +AGASVRS+ALVGSHATRYT+PS+G++++
Sbjct: 253 SVTG----GTSLDTIKSALFEAGASVRSTALVGSHATRYTMPSSGASKS 297


>ref|YP_783245.1| hypothetical protein RPE_4341 [Rhodopseudomonas palustris BisA53]
 gb|ABJ08265.1| Chorismate mutase [Rhodopseudomonas palustris BisA53]
          Length = 283

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 92/108 (85%), Gaps = 4/108 (3%)

Query: 10  PAALPVFVISRVADDAMVTEVQTWSVRVSGWNADVARALAPLAEIVAVPDTAFDGAALLV 69
           PAALPVFV+SRVAD AMVTEV+TWSVRVSGWNA+ ARAL+PLA+IVAVPDTAFDGAALLV
Sbjct: 179 PAALPVFVVSRVADSAMVTEVETWSVRVSGWNAETARALSPLADIVAVPDTAFDGAALLV 238

Query: 70  SVTGQDLTNKGFEAIKLALIKAGASVRSSALVGSHATRYTVPSNGSAR 117
           S++       G + IK ALI AGASVR+SALVGSHA RYTVP NG+ R
Sbjct: 239 SIS----DGGGLDNIKAALIAAGASVRASALVGSHAKRYTVPPNGAPR 282


>ref|YP_534125.1| hypothetical protein RPC_4282 [Rhodopseudomonas palustris BisB18]
 gb|ABD89806.1| Chorismate mutase [Rhodopseudomonas palustris BisB18]
          Length = 283

 Score =  157 bits (396), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 92/109 (84%), Gaps = 4/109 (3%)

Query: 10  PAALPVFVISRVADDAMVTEVQTWSVRVSGWNADVARALAPLAEIVAVPDTAFDGAALLV 69
           PAALPVFV+SRVAD AMVTEV+ WSVRVSGWNA++ARAL+PLAEIVAVPDTAFDGAALL+
Sbjct: 179 PAALPVFVVSRVADSAMVTEVEMWSVRVSGWNAEIARALSPLAEIVAVPDTAFDGAALLI 238

Query: 70  SVTGQDLTNKGFEAIKLALIKAGASVRSSALVGSHATRYTVPSNGSART 118
           S+TG        +A+K ALI +GAS+RS ALVGSHATRY VP  G+ ++
Sbjct: 239 SITG----TTSLDAVKTALIDSGASLRSQALVGSHATRYMVPPTGAPKS 283