BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0035.p         (108 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004304244.1| AMP-dependent synthetase and ligase [Polymor...   116   1e-24
ref|YP_004416470.1| putative AMP-binding enzyme [Pusillimonas sp...   115   2e-24
ref|ZP_07715953.1| AMP-binding enzyme [Aeromicrobium marinum DSM...   115   2e-24
ref|YP_550633.1| AMP-dependent synthetase and ligase [Polaromona...   115   3e-24
ref|YP_004495193.1| AMP-binding enzyme [Amycolicicoccus subflavu...   115   3e-24

>ref|YP_004304244.1| AMP-dependent synthetase and ligase [Polymorphum gilvum
           SL003B-26A1]
 gb|ADZ70941.1| AMP-dependent synthetase and ligase [Polymorphum gilvum
           SL003B-26A1]
          Length = 604

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 80/106 (75%)

Query: 1   VVGEAKKYLGAIIQVDYDNVGRWARDRALAYTNYKSLSQLPEVNELVERVVNETNKRFAR 60
           V+GE +KY+ A+IQ+D++ VG+WA +  +++TN+++L++ P V ELV+  +   N + A+
Sbjct: 498 VIGEGRKYVSALIQIDFETVGKWAEEHRISFTNFRNLAENPAVRELVDAEIKAANSQLAQ 557

Query: 61  VENIRRFAILEKELDHDDGELTATQKVRRAMIEKKFARELAIIYRA 106
           V +IRRF +L KELDHDD E+TAT KVRR+ I+ K+A E+A +Y A
Sbjct: 558 VAHIRRFHLLTKELDHDDDEVTATMKVRRSNIQTKYATEIAGLYSA 603


>ref|YP_004416470.1| putative AMP-binding enzyme [Pusillimonas sp. T7-7]
 gb|AEC19846.1| putative AMP-binding enzyme [Pusillimonas sp. T7-7]
          Length = 606

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 76/104 (73%)

Query: 1   VVGEAKKYLGAIIQVDYDNVGRWARDRALAYTNYKSLSQLPEVNELVERVVNETNKRFAR 60
           V+ E +KY+ A+IQ+++D V +WA  R +A+T+++SL++ PEV+ LV   V   N + A+
Sbjct: 502 VIAEGRKYVSALIQIEFDTVAKWAESRGIAFTHFRSLAEHPEVHRLVNEEVEAANAQLAQ 561

Query: 61  VENIRRFAILEKELDHDDGELTATQKVRRAMIEKKFARELAIIY 104
           V +IRRF +L KELDHDDGE+TAT KVRRA I K +A ++  +Y
Sbjct: 562 VSHIRRFHLLTKELDHDDGEVTATMKVRRASIYKGYAEQIEALY 605


>ref|ZP_07715953.1| AMP-binding enzyme [Aeromicrobium marinum DSM 15272]
 gb|EFQ84543.1| AMP-binding enzyme [Aeromicrobium marinum DSM 15272]
          Length = 614

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 78/106 (73%)

Query: 1   VVGEAKKYLGAIIQVDYDNVGRWARDRALAYTNYKSLSQLPEVNELVERVVNETNKRFAR 60
           V+G+ +KYL A+I ++ D VG WA+ R +AYT Y+ L+  PEV  LV++VV+ETN++FA 
Sbjct: 502 VIGDRRKYLTALIGIELDTVGAWAQRRKIAYTTYRDLTTKPEVIALVQKVVDETNEKFAA 561

Query: 61  VENIRRFAILEKELDHDDGELTATQKVRRAMIEKKFARELAIIYRA 106
           VE ++ F ++ KELDHD GELTATQKV+R+ +  +F  E+  +Y A
Sbjct: 562 VETLKAFHLIPKELDHDAGELTATQKVKRSAVMGQFETEIEAMYGA 607


>ref|YP_550633.1| AMP-dependent synthetase and ligase [Polaromonas sp. JS666]
 gb|ABE45735.1| AMP-dependent synthetase and ligase [Polaromonas sp. JS666]
          Length = 601

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 76/105 (72%)

Query: 1   VVGEAKKYLGAIIQVDYDNVGRWARDRALAYTNYKSLSQLPEVNELVERVVNETNKRFAR 60
           +V +A+K++GA+IQ+DYD V +WA  R + +T+++SL +  EV ELV+  V++ N   A 
Sbjct: 497 IVADARKFVGALIQIDYDAVAQWAESRNVTFTHFRSLVETAEVRELVQAEVDKGNALLAE 556

Query: 61  VENIRRFAILEKELDHDDGELTATQKVRRAMIEKKFARELAIIYR 105
           V  IRRF +L KELDHDDGE+TAT KVRRA I K +A E+  +YR
Sbjct: 557 VSRIRRFHLLTKELDHDDGEVTATMKVRRASIYKTYAAEIEALYR 601


>ref|YP_004495193.1| AMP-binding enzyme [Amycolicicoccus subflavus DQS3-9A1]
 gb|AEF42393.1| AMP-binding enzyme [Amycolicicoccus subflavus DQS3-9A1]
          Length = 638

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 69/97 (71%)

Query: 1   VVGEAKKYLGAIIQVDYDNVGRWARDRALAYTNYKSLSQLPEVNELVERVVNETNKRFAR 60
           V+G+ + YL A++ +D+D+V  WA  + L YT Y+ LS  PEV +LV   +  TN RFAR
Sbjct: 506 VIGDKRPYLTALVGIDFDSVSDWAARKGLQYTTYRDLSTKPEVLDLVREAILATNDRFAR 565

Query: 61  VENIRRFAILEKELDHDDGELTATQKVRRAMIEKKFA 97
           VENIR+F +L KELDHDDGELTATQKVRR  +  +F 
Sbjct: 566 VENIRKFRVLLKELDHDDGELTATQKVRRTALADRFG 602