BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0098.0020.p (445 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773256.1| transcriptional regulator [Bradyrhizobium japon... 551 e-155 ref|YP_354542.1| GntR family transcriptional regulator [Rhodobac... 340 4e-91 ref|YP_002520104.1| hypothetical protein RSKD131_3171 [Rhodobact... 337 4e-90 ref|YP_002424077.1| GntR family transcriptional regulator [Methy... 332 6e-89 ref|ZP_05104654.1| aminotransferase, classes I and II superfamil... 331 1e-88 >ref|NP_773256.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51881.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 461 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 279/444 (62%), Positives = 340/444 (76%), Gaps = 2/444 (0%) Query: 2 FLRIVDALAADIASGRLVRGQRLPTHRALASALDIDLTTVTRAYGEARRRGLLDARVGQG 61 + RIV+A+ ADIA+GRLVRGQ+LPT RALA ALDIDLTTVTRAY EARRRG+L+ARVGQG Sbjct: 20 YQRIVEAMEADIAAGRLVRGQQLPTQRALAKALDIDLTTVTRAYTEARRRGILEARVGQG 79 Query: 62 TFVSETTARAASDLAAPVNIDLSMNLPPQPVEANLDLRIAQGLATIRSEAGFSAYLGYAR 121 +FVSET+AR A DL PV IDLSMN+PP P+EA LD RI GL +R+++G +A+L Y Sbjct: 80 SFVSETSARRAVDLPHPVAIDLSMNVPPHPLEAQLDERIVAGLEALRAQSGLTAFLNYQP 139 Query: 122 PGGTTEEREAGAAWLAPRVPQASADRIVIYPGSQAIIFNALLALTSPGDVVVTEALTFPG 181 PGG+ ERE A W+ RVP A ADR+VI+PG+Q I+FN L L PGD+V+TEALTFPG Sbjct: 140 PGGSVHEREVAARWMRARVPHAHADRLVIFPGTQTILFNLLAHLARPGDIVLTEALTFPG 199 Query: 182 IKAAAARLDVRLVGVAMDAEGARPDALDEACRKHKPKAVYLVPTQQNPTTATMSAIRRKA 241 IKAAAARL ++LVGVAMD G +PDAL +ACR HKPKAVYL+PT NPTTAT+ RR A Sbjct: 200 IKAAAARLGIKLVGVAMDDGGIQPDALAKACRTHKPKAVYLIPTLHNPTTATLLPERRSA 259 Query: 242 IAGIISKRGCVLIEDDVYGPLEPQMAPIATLIPERTYYAASIAKCIAPALRVAYLLAPDA 301 IA II +LIEDD YG L+ +PIA LIPERTY A +++KCIAPALRVAYL+ PD Sbjct: 260 IARIIRDADTILIEDDAYGLLDRSASPIANLIPERTYLATTLSKCIAPALRVAYLVTPDN 319 Query: 302 SAEQRMRAGLQATMQMPPSLMVALVTQWMRSGVAADIIRAIRNEAAARQQLAARFLKGVT 361 +A+Q MR+ LQAT+QMP LMVALVT W+ +G+A II AIR+EA RQQLA R LKG+ Sbjct: 320 AAQQEMRSYLQATVQMPAPLMVALVTHWLETGIADRIITAIRSEAVGRQQLAQRALKGLQ 379 Query: 362 YAARPASHHLWMPLPKHFDGTDLLSHLMRNGLAVVGEDAFAAGEAAPRGLRVSLGAARNR 421 + A+PA+HHLW+ LP+ D+ +HL+RNGLAVV DAF PR R+SLGAARNR Sbjct: 380 FLAKPAAHHLWLRLPE--GRPDVAAHLLRNGLAVVAGDAFTVDGTPPRAARISLGAARNR 437 Query: 422 AELSQALQVLSNAVRTPVGATQIV 445 AEL++AL++L A+ P QIV Sbjct: 438 AELTEALRILVGALHKPADTRQIV 461 >ref|YP_354542.1| GntR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] sp|Q01856.1|Y3073_RHOS4 RecName: Full=Uncharacterized HTH-type transcriptional regulator RHOS4_30730 gb|AAA26118.1| 48 kDa protein [Rhodobacter sphaeroides] gb|ABA80641.1| Transcriptional regulator, MocR family [Rhodobacter sphaeroides 2.4.1] Length = 456 Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 196/446 (43%), Positives = 273/446 (61%), Gaps = 5/446 (1%) Query: 2 FLRIVDALAADIASGRLVRGQRLPTHRALASALDIDLTTVTRAYGEARRRGLLDARVGQG 61 +L IVDAL ADI +GR+ G+RLP RA+A AL +DLTTVTRA EA+RRGL+ A+VG+G Sbjct: 14 YLGIVDALEADIRAGRVTPGERLPPQRAIAEALGVDLTTVTRALNEAQRRGLVSAQVGRG 73 Query: 62 TFVSETTARAASDLAAPVNIDLSMNLPPQPVEANLDLRIAQGLATIRSEAGFSAYLGYAR 121 TFV + A D +DLSMN+PPQP E +L + QG+A+I + + + Y Sbjct: 74 TFVRD---EPAGDEGGGTPLDLSMNIPPQPAEPDLRRILPQGIASILTSPRGTLAMHYQE 130 Query: 122 PGGTTEEREAGAAWLAPRVPQASADRIVIYPGSQAIIFNALLALTSPGDVVVTEALTFPG 181 G +R A A+WLA RV ASADRIV+ G+QA +F L GDVV A+T+PG Sbjct: 131 STGAPADRTAAASWLAGRVAGASADRIVVTSGAQAALFALCALLLGRGDVVAAGAVTYPG 190 Query: 182 IKAAAARLDVRLVGVAMDAEGARPDALDEACRKHKPKAVYLVPTQQNPTTATMSAIRRKA 241 +KA AA+ + L VAMD +G P+A + CR+ PK +YL+P+ NPTTAT+ A RR+ Sbjct: 191 LKAVAAQQHLELAPVAMDEQGILPEAFEAVCRERAPKLLYLIPSIDNPTTATLPADRRRE 250 Query: 242 IAGIISKRGCVLIEDDVYGPLEPQMAP-IATLIPERTYYAASIAKCIAPALRVAYLLAPD 300 +A + + G +LIEDD Y PL + P +A L PE T++ A+++KC PALR+AY+LAP+ Sbjct: 251 VAAVARRHGVLLIEDDPYAPLRSERLPALAELAPELTWHIATLSKCSTPALRIAYVLAPN 310 Query: 301 ASAEQRMRAGLQATMQMPPSLMVALVTQWMRSGVAADIIRAIRNEAAARQQLAARFLKGV 360 A+A R+ L++++ M P + AL T+W+ G + AIR E RQ AA G+ Sbjct: 311 AAAAVRLATVLRSSVLMAPPIFAALATRWITDGTLTALASAIRAENRQRQSSAASIFSGL 370 Query: 361 TYAARPASHHLWMPLPKHFDGTDLLSHLMRNGLAVVGEDAFAAGEAAPRGLRVSLGAARN 420 +AA P HHLW+ LP+ + + H R GLA+V AFA +R+SLG A + Sbjct: 371 DFAADPDGHHLWLHLPQRWRAAEFADHAERAGLAIVPASAFAVSPHPAEAVRISLGIAPD 430 Query: 421 RAELSQALQVLSNAVRTP-VGATQIV 445 R L + L LS + P VG+ +V Sbjct: 431 RGMLEEGLTQLSGLLTQPAVGSRAVV 456 >ref|YP_002520104.1| hypothetical protein RSKD131_3171 [Rhodobacter sphaeroides KD131] gb|ACM03031.1| Hypothetical Protein RSKD131_3171 [Rhodobacter sphaeroides KD131] Length = 456 Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 195/446 (43%), Positives = 272/446 (60%), Gaps = 5/446 (1%) Query: 2 FLRIVDALAADIASGRLVRGQRLPTHRALASALDIDLTTVTRAYGEARRRGLLDARVGQG 61 +L IVDAL ADI +GR+ G+RLP RA+A AL +DLTTVTRA EA+RRGL+ A+VG+G Sbjct: 14 YLGIVDALEADIRAGRVTPGERLPPQRAIAEALGVDLTTVTRALNEAQRRGLVSAQVGRG 73 Query: 62 TFVSETTARAASDLAAPVNIDLSMNLPPQPVEANLDLRIAQGLATIRSEAGFSAYLGYAR 121 TFV + A D +DLSMN+PPQP E +L + QG+A+I + + + Y Sbjct: 74 TFVRD---EPAGDEGGGTPLDLSMNIPPQPAEPDLRRILPQGIASILTSPRGTLAMHYQE 130 Query: 122 PGGTTEEREAGAAWLAPRVPQASADRIVIYPGSQAIIFNALLALTSPGDVVVTEALTFPG 181 G +R A A+WL RV ASADRIV+ G+QA +F L GDVV A+T+PG Sbjct: 131 STGAPADRTAAASWLTGRVAGASADRIVVTSGAQAALFALCALLLGRGDVVAAGAVTYPG 190 Query: 182 IKAAAARLDVRLVGVAMDAEGARPDALDEACRKHKPKAVYLVPTQQNPTTATMSAIRRKA 241 +KA AA+ + L VAMD +G P+A + CR+ PK +YL+P+ NPTTAT+ A RR+ Sbjct: 191 LKAVAAQQRLELAPVAMDEQGILPEAFEAVCRERAPKLLYLIPSIDNPTTATLPADRRRE 250 Query: 242 IAGIISKRGCVLIEDDVYGPLEPQMAP-IATLIPERTYYAASIAKCIAPALRVAYLLAPD 300 +A + + G +LIEDD Y PL + P +A L PE T++ A+++KC PALR+AY+LAP+ Sbjct: 251 VAAVARRHGVLLIEDDPYAPLRSERLPALAELAPELTWHIATLSKCATPALRIAYVLAPN 310 Query: 301 ASAEQRMRAGLQATMQMPPSLMVALVTQWMRSGVAADIIRAIRNEAAARQQLAARFLKGV 360 A+A R+ L++++ M P + AL T+W+ G + AIR E RQ AA G+ Sbjct: 311 AAAAVRLATVLRSSVLMAPPIFAALATRWITDGTLTALASAIRAENRQRQSSAASIFSGL 370 Query: 361 TYAARPASHHLWMPLPKHFDGTDLLSHLMRNGLAVVGEDAFAAGEAAPRGLRVSLGAARN 420 +AA P HHLW+ LP+ + + H R GLA+V AFA +R+SLG A + Sbjct: 371 DFAADPDGHHLWLHLPQRWRAAEFADHAERAGLAIVPASAFAVSPHPAEAVRISLGIAPD 430 Query: 421 RAELSQALQVLSNAVRTP-VGATQIV 445 R L + L LS + P +GA +V Sbjct: 431 RGVLEEGLTQLSGLLAQPALGARAVV 456 >ref|YP_002424077.1| GntR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gb|ACK86149.1| transcriptional regulator, GntR family with aminotransferase domain [Methylobacterium chloromethanicum CM4] Length = 481 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 190/438 (43%), Positives = 264/438 (60%), Gaps = 8/438 (1%) Query: 2 FLRIVDALAADIASGRLVRGQRLPTHRALASALDIDLTTVTRAYGEARRRGLLDARVGQG 61 +L IV+ALA DI +GRL+ G RLPT RALA LD++ TTV+R Y EA +RGL++ RVGQG Sbjct: 37 YLAIVEALADDIRNGRLLPGTRLPTQRALAGVLDLNFTTVSRGYVEAHKRGLIEGRVGQG 96 Query: 62 TFVSETTARA--ASDLAAPVNIDLSMNLPPQPVEANLDLRIAQGLATIRSE-AGFSAYLG 118 TFV + ARA ++ A P +D +MNLPP+P L R+ A + + A Y G Sbjct: 97 TFVVDP-ARAIRPAESARPGPVDFTMNLPPEPDAPALKARMQASFAELSGDLANLLRYQG 155 Query: 119 YARPGGTTEEREAGAAWLAPRVPQASADRIVIYPGSQAIIFNALLALTSPGDVVVTEALT 178 + GGT E+R+A WLA R QA +R++I PG+ + +F L + PGDV+ E +T Sbjct: 156 F---GGTEEDRDAATRWLAGRGIQAPRERLLICPGAHSALFAVLGQVARPGDVLCAERIT 212 Query: 179 FPGIKAAAARLDVRLVGVAMDAEGARPDALDEACRKHKPKAVYLVPTQQNPTTATMSAIR 238 +PGI+A A L +RLV + MD G PDA AC K PKA+YL P QNPTTAT+ R Sbjct: 213 YPGIRAMVAHLGLRLVDLPMDRHGVDPDAFAAACTKVAPKALYLNPLLQNPTTATIPRGR 272 Query: 239 RKAIAGIISKRGCVLIEDDVYGPLEPQMAP-IATLIPERTYYAASIAKCIAPALRVAYLL 297 R+AI + + +IEDD Y + P P ATL PE TYY A ++KC+ LR+A+L+ Sbjct: 273 REAIIAVARRYAVTIIEDDAYARICPTPPPSFATLAPEITYYVAGLSKCLGAGLRLAFLV 332 Query: 298 APDASAEQRMRAGLQATMQMPPSLMVALVTQWMRSGVAADIIRAIRNEAAARQQLAARFL 357 AP A A + L+A M + AL T+W+ G A I++ +R E+AARQ++AA L Sbjct: 333 APSARAALPLGGALRAATVMASPIATALATRWITDGTAEAIVQFVRAESAARQRIAATLL 392 Query: 358 KGVTYAARPASHHLWMPLPKHFDGTDLLSHLMRNGLAVVGEDAFAAGEAAPRGLRVSLGA 417 T++A P H+W+ LP+ + + S GL VVG D F G P +R+ LG Sbjct: 393 PAGTFSADPHGFHVWITLPEGWTRSAFASQGRAAGLGVVGSDPFCVGGTPPEAVRLCLGG 452 Query: 418 ARNRAELSQALQVLSNAV 435 RA++SQ L+VL++A+ Sbjct: 453 PTTRAQISQGLEVLAHAL 470 >ref|ZP_05104654.1| aminotransferase, classes I and II superfamily [Methylophaga thiooxidans DMS010] gb|EEF79223.1| aminotransferase, classes I and II superfamily [Methylophaga thiooxydans DMS010] Length = 460 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 180/433 (41%), Positives = 262/433 (60%), Gaps = 4/433 (0%) Query: 2 FLRIVDALAADIASGRLVRGQRLPTHRALASALDIDLTTVTRAYGEARRRGLLDARVGQG 61 +L IV AL +DI +GR+ G RLP+ RA+A AL +DLTTVTRA+ EARRRGL++ G+G Sbjct: 16 YLGIVQALESDIYAGRVKPGDRLPSQRAIAEALRVDLTTVTRAFNEARRRGLVEGNKGRG 75 Query: 62 TFV-SETTARAASDLAAPVNIDLSMNLPPQPVEANLDLRIAQGLATIRSEAGFSAYLGYA 120 +F+ + SD A +DLSMN PPQPV ANL RI +G+A + ++ L Y Sbjct: 76 SFIRGAVEKKLISDKQAL--LDLSMNNPPQPVSANLQQRIPEGIAGLIADQRRMLQLHYQ 133 Query: 121 RPGGTTEEREAGAAWLAPRVPQASADRIVIYPGSQAIIFNALLALTSPGDVVVTEALTFP 180 G +REA A WL +V ADR++I G+Q+ ++ L G+ + T T+P Sbjct: 134 DSAGNPVDREAAAHWLQAKVVNIHADRVLITGGAQSALYAICHHLLKQGEYLATAEYTYP 193 Query: 181 GIKAAAARLDVRLVGVAMDAEGARPDALDEACRKHKPKAVYLVPTQQNPTTATMSAIRRK 240 G+ A + +L +L +A D +G PDA +++C+K KA+Y++P NPTTAT+ RRK Sbjct: 194 GLNAVSQQLGCQLQAIATDEQGIIPDAFEQSCQKKSIKALYVIPALDNPTTATIPLARRK 253 Query: 241 AIAGIISKRGCVLIEDDVYGPLEPQ-MAPIATLIPERTYYAASIAKCIAPALRVAYLLAP 299 I I + +IEDD Y L+ + + A+L+PE T++ A+++KC PALRVA+++ P Sbjct: 254 KIVEIARRYKVAIIEDDPYSTLQTKPIEAFASLLPELTWHIATLSKCATPALRVAFIITP 313 Query: 300 DASAEQRMRAGLQATMQMPPSLMVALVTQWMRSGVAADIIRAIRNEAAARQQLAARFLKG 359 +A +++ ++AT M P LM ALVT+W+ G DI +AIR E ARQQLAA LK Sbjct: 314 NADDIEKLADVIRATQLMAPPLMCALVTRWIYDGTLDDIAQAIRQENNARQQLAATILKD 373 Query: 360 VTYAARPASHHLWMPLPKHFDGTDLLSHLMRNGLAVVGEDAFAAGEAAPRGLRVSLGAAR 419 TY A P HHLW+ LP ++ D SH + G+ +V +FA +RVSLG A Sbjct: 374 WTYQADPDGHHLWLALPNNWLAADFASHAEKMGVTIVPSSSFAITNKPIDAVRVSLGLAT 433 Query: 420 NRAELSQALQVLS 432 + L++AL +L+ Sbjct: 434 DLDSLTEALTILT 446