BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0098.0013.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_577978.1| UvrD/REP helicase [Nitrobacter hamburgensis X14... 482 e-134 ref|ZP_08630935.1| ATP-dependent DNA helicase UvrD/PcrA [Bradyrh... 479 e-133 ref|NP_773201.1| DNA helicase II [Bradyrhizobium japonicum USDA ... 476 e-132 ref|YP_318966.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-... 469 e-130 ref|YP_004108195.1| UvrD/REP helicase [Rhodopseudomonas palustri... 468 e-130 >ref|YP_577978.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gb|ABE63518.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis X14] Length = 833 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 254/296 (85%), Positives = 268/296 (90%), Gaps = 5/296 (1%) Query: 1 MTEPSKLPHHGVPEHQPAAGGIAARARARAAAGGPQYLNGLNPEQREAVETLDGPVLVLA 60 MTEP++L H VPEHQPAAGGIAARARA A PQYL GLNPEQREAVETLDGPVLVLA Sbjct: 1 MTEPNRLIHRDVPEHQPAAGGIAARARAAAT---PQYLAGLNPEQREAVETLDGPVLVLA 57 Query: 61 GAGTGKTRVLTTRIAHILSQGRARPHEILSVTFTNKAAREMKLRLGQMLGQAVEGMPWLG 120 GAGTGKTRVLTTRIAHILSQGRARP EILSVTFTNKAAREMK RLGQMLG AVEGMPWLG Sbjct: 58 GAGTGKTRVLTTRIAHILSQGRARPGEILSVTFTNKAAREMKHRLGQMLGHAVEGMPWLG 117 Query: 121 TFHSIGGRILRIHAELVQLKSNFTVLDVDDQVRLLKQLLQAENIDDKRWPARMLAGLIDG 180 TFHSIGGRILR+HAELV LKSNFTVLDVDDQ+RLLKQLLQA+NIDDKRWPARMLAGLIDG Sbjct: 118 TFHSIGGRILRVHAELVHLKSNFTVLDVDDQIRLLKQLLQADNIDDKRWPARMLAGLIDG 177 Query: 181 WKNRGLSPSQVPAGEAASFGNGKGGKIYATYQERLKILNAADFGDLLLENIRLFRENPDV 240 WKNRGL+P+QVP+GEAA FGNG+GGK+YA YQ RLKILNAADFGDLLLENIRLFRE+PDV Sbjct: 178 WKNRGLTPAQVPSGEAAVFGNGRGGKLYAAYQARLKILNAADFGDLLLENIRLFREHPDV 237 Query: 241 LRQYQSRFKFILVDEYQDTNVAQYLWLRLLSQAPSR--PGQPLSAVIPGELTSPRL 294 LRQYQ RFKFILVDEYQDTNVAQYLWLRLLSQAPS+ PG +V+ E SP L Sbjct: 238 LRQYQGRFKFILVDEYQDTNVAQYLWLRLLSQAPSQSLPGLTRQSVVSPEDGSPGL 293 >ref|ZP_08630935.1| ATP-dependent DNA helicase UvrD/PcrA [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06467.1| ATP-dependent DNA helicase UvrD/PcrA [Bradyrhizobiaceae bacterium SG-6C] Length = 827 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 245/289 (84%), Positives = 256/289 (88%), Gaps = 8/289 (2%) Query: 1 MTEPSKLP---HHGVPEHQPAAGGIAARARARAAAGGPQYLNGLNPEQREAVETLDGPVL 57 MTEP+KLP VP HQPAA A A+ PQYL LNPEQREAVETL+GPVL Sbjct: 1 MTEPNKLPPSDFRDVPSHQPAA---GGIAARARASAAPQYLTALNPEQREAVETLEGPVL 57 Query: 58 VLAGAGTGKTRVLTTRIAHILSQGRARPHEILSVTFTNKAAREMKLRLGQMLGQAVEGMP 117 VLAGAGTGKTRVLT+RIAHILS GRARPHEILSVTFTNKAAREMK RLGQMLGQAVEGMP Sbjct: 58 VLAGAGTGKTRVLTSRIAHILSTGRARPHEILSVTFTNKAAREMKHRLGQMLGQAVEGMP 117 Query: 118 WLGTFHSIGGRILRIHAELVQLKSNFTVLDVDDQVRLLKQLLQAENIDDKRWPARMLAGL 177 WLGTFHSIGGRILR HAELVQLKSNFTVLDVDDQ+RLLKQLLQAE IDDKRWPARMLAGL Sbjct: 118 WLGTFHSIGGRILRYHAELVQLKSNFTVLDVDDQIRLLKQLLQAEGIDDKRWPARMLAGL 177 Query: 178 IDGWKNRGLSPSQVPAGEAASFGNGKGGKIYATYQERLKILNAADFGDLLLENIRLFREN 237 IDGWKNRGL+PSQVPAGEAA FGNGKGGK+YATYQERLKILNAADFGDLLLENIRLFREN Sbjct: 178 IDGWKNRGLTPSQVPAGEAAVFGNGKGGKLYATYQERLKILNAADFGDLLLENIRLFREN 237 Query: 238 PDVLRQYQSRFKFILVDEYQDTNVAQYLWLRLLSQAPSRPGQPLSAVIP 286 PDVLRQYQ RFK+ILVDEYQDTNVAQYLWLRLL+QAPS Q + A+ P Sbjct: 238 PDVLRQYQGRFKYILVDEYQDTNVAQYLWLRLLAQAPS--NQTVPAIAP 284 >ref|NP_773201.1| DNA helicase II [Bradyrhizobium japonicum USDA 110] dbj|BAC51826.1| DNA helicase II [Bradyrhizobium japonicum USDA 110] Length = 872 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 242/289 (83%), Positives = 256/289 (88%), Gaps = 10/289 (3%) Query: 1 MTEPSKLPHHGVPEHQPAAGGIAARARARAAAGGPQYLNGLNPEQREAVETLDGPVLVLA 60 MTEPSK+ VP+HQPAA A A+ GP+YL+GLNPEQREAVETLDGPVLVLA Sbjct: 19 MTEPSKIT--SVPDHQPAA---GGIAARARASVGPKYLSGLNPEQREAVETLDGPVLVLA 73 Query: 61 GAGTGKTRVLTTRIAHILSQGRARPHEILSVTFTNKAAREMKLRLGQMLGQAVEGMPWLG 120 GAGTGKTRVLTTRIAHILSQGRARP EILSVTFTNKAAREMK RLGQMLG AVEGMPWLG Sbjct: 74 GAGTGKTRVLTTRIAHILSQGRARPAEILSVTFTNKAAREMKHRLGQMLGHAVEGMPWLG 133 Query: 121 TFHSIGGRILRIHAELVQLKSNFTVLDVDDQVRLLKQLLQAENIDDKRWPARMLAGLIDG 180 TFHSIGGRILR HAEL QLKSNFTVLDVDDQVRLLKQLLQAENIDDKRWPARMLAGLIDG Sbjct: 134 TFHSIGGRILRTHAELAQLKSNFTVLDVDDQVRLLKQLLQAENIDDKRWPARMLAGLIDG 193 Query: 181 WKNRGLSPSQVPAGEAASFGNGKGGKIYATYQERLKILNAADFGDLLLENIRLFRENPDV 240 WKNRGL+PSQVP+GEAA F NGKGGK+Y +YQERLKILNAADFGDLLLENIR+FRE+PD+ Sbjct: 194 WKNRGLTPSQVPSGEAAVFANGKGGKLYTSYQERLKILNAADFGDLLLENIRIFREHPDI 253 Query: 241 LRQYQSRFKFILVDEYQDTNVAQYLWLRLLSQAPSRPGQPLSAVIPGEL 289 LRQYQ RFK+ILVDEYQDTNVAQYLWLRLLSQAPS VIPG + Sbjct: 254 LRQYQQRFKYILVDEYQDTNVAQYLWLRLLSQAPS-----PKVVIPGRV 297 >ref|YP_318966.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255] gb|ABA05614.1| ATP-dependent DNA helicase, Rep family [Nitrobacter winogradskyi Nb-255] Length = 816 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 238/293 (81%), Positives = 255/293 (87%), Gaps = 3/293 (1%) Query: 1 MTEPSKLPHHGVPEHQPAAGGIAARARARAAAGGPQYLNGLNPEQREAVETLDGPVLVLA 60 MTEP++L H V HQPAA A AA P+YL+GLNPEQREAVETLDGPVLVLA Sbjct: 1 MTEPNRLIHTNVSGHQPAA---GGIAARARAAAAPRYLSGLNPEQREAVETLDGPVLVLA 57 Query: 61 GAGTGKTRVLTTRIAHILSQGRARPHEILSVTFTNKAAREMKLRLGQMLGQAVEGMPWLG 120 GAGTGKTRVLTTRIAHILSQGRAR EILSVTFTNKAAREMK RLGQMLGQAVEGMPWLG Sbjct: 58 GAGTGKTRVLTTRIAHILSQGRARSGEILSVTFTNKAAREMKHRLGQMLGQAVEGMPWLG 117 Query: 121 TFHSIGGRILRIHAELVQLKSNFTVLDVDDQVRLLKQLLQAENIDDKRWPARMLAGLIDG 180 TFHSI GRILR+HAELVQLKSNFT+LDVDDQ+RLLKQLLQA+NIDDKRWPARMLAGLIDG Sbjct: 118 TFHSIAGRILRVHAELVQLKSNFTILDVDDQIRLLKQLLQADNIDDKRWPARMLAGLIDG 177 Query: 181 WKNRGLSPSQVPAGEAASFGNGKGGKIYATYQERLKILNAADFGDLLLENIRLFRENPDV 240 WKNRGL+P+QVP+GEA+ FGNG+GGK+YA YQ RLKILNAADFGDLLLENIRLFRE+PDV Sbjct: 178 WKNRGLTPAQVPSGEASVFGNGRGGKLYAAYQARLKILNAADFGDLLLENIRLFREHPDV 237 Query: 241 LRQYQSRFKFILVDEYQDTNVAQYLWLRLLSQAPSRPGQPLSAVIPGELTSPR 293 LRQYQ+RFKFILVDEYQDTNVAQYLWLRLLSQAP A + E PR Sbjct: 238 LRQYQNRFKFILVDEYQDTNVAQYLWLRLLSQAPPSSHALFPAPVAAEGPDPR 290 >ref|YP_004108195.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] gb|ADU43462.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] Length = 863 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 235/271 (86%), Positives = 247/271 (91%), Gaps = 3/271 (1%) Query: 37 YLNGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARPHEILSVTFTNK 96 YL+GLNPEQR+AVETLDGPVLVLAGAGTGKTRVLTTRIAHILS GRARP EILSVTFTNK Sbjct: 34 YLSGLNPEQRDAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNK 93 Query: 97 AAREMKLRLGQMLGQAVEGMPWLGTFHSIGGRILRIHAELVQLKSNFTVLDVDDQVRLLK 156 AAREMKLRLGQMLGQAVEGMPWLGTFHSIGGRILR HAELVQL SNFTVLD DDQ+RLLK Sbjct: 94 AAREMKLRLGQMLGQAVEGMPWLGTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLK 153 Query: 157 QLLQAENIDDKRWPARMLAGLIDGWKNRGLSPSQVPAGEAASFGNGKGGKIYATYQERLK 216 QLL A+NIDDKRWPARMLAGLIDGWKNRGL+PSQVPAGEAA FGNG+GGK+YA YQERLK Sbjct: 154 QLLAADNIDDKRWPARMLAGLIDGWKNRGLTPSQVPAGEAAMFGNGRGGKLYAQYQERLK 213 Query: 217 ILNAADFGDLLLENIRLFRENPDVLRQYQSRFKFILVDEYQDTNVAQYLWLRLLSQAPSR 276 ILNAADFGDLLLENIRLFRE+PDVLRQYQ+RFKFILVDEYQDTNVAQYLWLRLLSQ P+ Sbjct: 214 ILNAADFGDLLLENIRLFREHPDVLRQYQNRFKFILVDEYQDTNVAQYLWLRLLSQTPAT 273 Query: 277 PGQPLSAVIPGELTSPRLRGAVGLRSNPGRG 307 P +P V TSP RG VG RS+PG G Sbjct: 274 P-RPTRDVETLH-TSPH-RGEVGERSSPGEG 301