BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0098.0009.p (454 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773197.1| hypothetical protein bll6557 [Bradyrhizobium ja... 481 e-133 ref|ZP_07024944.1| protein of unknown function DUF1520 [Afipia s... 368 2e-99 ref|YP_004633492.1| hypothetical protein OCA5_c25560 [Oligotroph... 338 9e-91 ref|YP_002288422.1| hypothetical protein OCAR_5425 [Oligotropha ... 337 4e-90 ref|YP_576466.1| hypothetical protein Nham_1163 [Nitrobacter ham... 298 1e-78 >ref|NP_773197.1| hypothetical protein bll6557 [Bradyrhizobium japonicum USDA 110] dbj|BAC51822.1| bll6557 [Bradyrhizobium japonicum USDA 110] Length = 451 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 248/369 (67%), Positives = 292/369 (79%), Gaps = 6/369 (1%) Query: 86 ASRGGGNFGRMRNAAIVPGHMRNTFNSLSRSGALRNGRLLSNPAARAQIAAAAALAGWHG 145 A GG NFG++RNAA+ P + RN N+ S A RNGRL+ NPAARAQIAAAAALAGWHG Sbjct: 89 ARHGGPNFGQIRNAAVRPANFRNALNA--HSSAFRNGRLIGNPAARAQIAAAAALAGWHG 146 Query: 146 GAVANGWWQHPGGGYGWVGPLFWPFAYNDIYDYAIWGDDIGFWGYGYPDIYAGIFGPYGY 205 + +GWWQHPGGGYGWVGPLFWPFAYND+YDY IWGD +GFWGYGYPDIYAGIFGPYGY Sbjct: 147 AS--SGWWQHPGGGYGWVGPLFWPFAYNDLYDYTIWGDGLGFWGYGYPDIYAGIFGPYGY 204 Query: 206 DDLRGYLPERRTGRRYRGGGRIEQMCGNDSRSVAGLPVDQIADTVQPTEAQSAALGELGN 265 D L YLP+R GRR G ++Q+CG+D R + GLP+DQIA VQP+EAQ A+L ELGN Sbjct: 205 DGLSAYLPQRPPGRRQARGVALDQLCGSDRREIVGLPIDQIAAAVQPSEAQGASLDELGN 264 Query: 266 ASLAAAQVIRAACPAQVVLTAPNRLAAMQQRIEAMVTAVGIVKPPLEKFYGLLDDEQKAR 325 AS+ AA +IRA+CPAQV TAP RLAAMQQRIEAM AV +V+P L+KFYG L DEQKAR Sbjct: 265 ASILAAGMIRASCPAQVAATAPGRLAAMQQRIEAMTKAVDLVQPALDKFYGSLTDEQKAR 324 Query: 326 LNALAENQRKEAAARDPNATVAQSCGAAQPAMQEWPTGEIDARLQLSDTQRGALQVLQDA 385 NALAE+QR+ A+ + ++ Q+CGAA A +WP +I+ARL +DTQR ALQVLQD Sbjct: 325 FNALAEDQRRATASSNTEGSLVQNCGAA--AALDWPGADIEARLHPNDTQRAALQVLQDT 382 Query: 386 SADAARKLKAACQTNEAMTPPARLAFVAKRLDVMLQAVKDVRAALENFYATLSDEQKAQF 445 SA + LKAACQ NE MTPPAR+A V KRLD+ML VK VRAALE+FY TL+DEQKAQF Sbjct: 383 SAKVSASLKAACQPNEVMTPPARMAAVRKRLDLMLDGVKSVRAALEDFYGTLNDEQKAQF 442 Query: 446 EAIGPKRSA 454 EAIGP+R++ Sbjct: 443 EAIGPRRTS 451 >ref|ZP_07024944.1| protein of unknown function DUF1520 [Afipia sp. 1NLS2] gb|EFI52086.1| protein of unknown function DUF1520 [Afipia sp. 1NLS2] Length = 550 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 220/444 (49%), Positives = 269/444 (60%), Gaps = 35/444 (7%) Query: 39 GGGHGHGGGHGRGGHGFGHM-HFGGGHHGGFGRSHAISRSGFAGHGAFASRGGGNFGRM- 96 GG GG H G FG + F G H G RS A SG G +R N R Sbjct: 69 GGARHFGGAHVGGARHFGGVRQFHGNRHVGASRSFARP-SGTRNAGRAVNRRPRNAARTA 127 Query: 97 -------------RNAAIVPGHMRNTFNSLSRSGALRNGRLLSNPAARAQIAAAAALAGW 143 R + +R S S +GALRN L +P AR + AAAA AGW Sbjct: 128 SQRTGIAATNRAARVNSPRAAAVRQGLRSRSVNGALRNRNALRSPVARTALVAAAATAGW 187 Query: 144 HGGAVANGWWQHPGGGYGWVGPLFWPFAYNDIYDYAIWGDDIG--FWGYGYPDIYAGIFG 201 G +GWW+H GGYGWVGPLFWPFAY D+YDY +WG D G FW YGY DIYAG+F Sbjct: 188 QGHR--HGWWRHGHGGYGWVGPLFWPFAYYDLYDYGLWGYDYGPAFWDYGYGDIYAGLFS 245 Query: 202 PYGYDDLRGYLPERRTGRRYRGGGR-----------IEQMCGNDSRSVAGLPVDQIADTV 250 PYGYD L GYLP RR+ G + + QMCG DS +AGLP+D+I + Sbjct: 246 PYGYDSLSGYLPSRRSAPSAGSGSQAAQTPPSDEDQLAQMCGADSGDIAGLPIDKIQQAI 305 Query: 251 QPTEAQSAALGELGNASLAAAQVIRAACPAQVVLTAPNRLAAMQQRIEAMVTAVGIVKPP 310 P +AQ AAL ELGNAS+ AAQ IR ACP + LTAP RLAAM++RIEAM +A+GI++P Sbjct: 306 SPDDAQRAALDELGNASVKAAQTIREACPTTLPLTAPARLAAMERRIEAMKSAIGIIQPA 365 Query: 311 LEKFYGLLDDEQKARLNALAENQRKEAAARDPNATVAQSCGAAQPA-MQEWPTGEIDARL 369 +EKFYGLL+D+QKARL A++ +++ + SCG + WPT EI+ RL Sbjct: 366 MEKFYGLLNDDQKARLVAMSPREKQGGKG---TTSSDGSCGITSLSDAVAWPTDEINKRL 422 Query: 370 QLSDTQRGALQVLQDASADAARKLKAACQTNEAMTPPARLAFVAKRLDVMLQAVKDVRAA 429 Q SD Q+ L LQDA+ AA LKA C+ + A+TPPARLA ++RLD +L AVK V AA Sbjct: 423 QPSDAQKVKLTALQDATFKAADSLKATCRPSTALTPPARLAAASERLDALLGAVKSVHAA 482 Query: 430 LENFYATLSDEQKAQFEAIGPKRS 453 L++FY TLSDEQKAQFEAIGP RS Sbjct: 483 LDDFYGTLSDEQKAQFEAIGPDRS 506 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Query: 231 CGNDSRSVA-GLPVDQIADTVQPTEAQSAALGELGNASLAAAQVIRAACPAQVVLTAPNR 289 CG S S A P D+I +QP++AQ L L +A+ AA ++A C LT P R Sbjct: 402 CGITSLSDAVAWPTDEINKRLQPSDAQKVKLTALQDATFKAADSLKATCRPSTALTPPAR 461 Query: 290 LAAMQQRIEAMVTAVGIVKPPLEKFYGLLDDEQKARLNALAENQRKEAAARDPNA 344 LAA +R++A++ AV V L+ FYG L DEQKA+ A+ ++ A + +A Sbjct: 462 LAAASERLDALLGAVKSVHAALDDFYGTLSDEQKAQFEAIGPDRSGSQQASNEDA 516 >ref|YP_004633492.1| hypothetical protein OCA5_c25560 [Oligotropha carboxidovorans OM5] gb|AEI03674.1| hypothetical protein OCA4_c25550 [Oligotropha carboxidovorans OM4] gb|AEI07251.1| hypothetical protein OCA5_c25560 [Oligotropha carboxidovorans OM5] Length = 606 Score = 338 bits (868), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 194/373 (52%), Positives = 231/373 (61%), Gaps = 27/373 (7%) Query: 106 MRNTFNSLSRSGALRNGRLLSNPAARAQIAAAAALAGWHGGAVANGWWQHPGGG---YGW 162 +R S GAL N L NPAARA + A+AA AGWH G + G YGW Sbjct: 190 VRQGLRSREVRGALGNRNALRNPAARAALVASAATAGWHNGRRHHHHRGWWRHGRGGYGW 249 Query: 163 VGPLFWPFAYNDIYDYAIWGDDIG--FWGYGYPDIYAGIFGPYGYDDLRGYLPERRTGR- 219 VGPLFWPFAY D+YDY WG D G FW YGY DIYAG+F PYGYD L GYLP +R Sbjct: 250 VGPLFWPFAYYDLYDYGFWGYDDGYAFWDYGYGDIYAGLFSPYGYDTLTGYLPSQRRATT 309 Query: 220 ------------------RYRGGGRIEQMCGNDSRSVAGLPVDQIADTVQPTEAQSAALG 261 R G + +MCG DS +AGLP+D+I + P +AQ A L Sbjct: 310 TAARSGSGSSSAPAKDQARVHEGDELARMCGADSGDIAGLPIDKIQQAISPDDAQRATLD 369 Query: 262 ELGNASLAAAQVIRAACPAQVVLTAPNRLAAMQQRIEAMVTAVGIVKPPLEKFYGLLDDE 321 EL NAS+ AA+ IRAACP + LTAP RLA+M+QRIEAM + I++P +EKFY LL+DE Sbjct: 370 ELANASVKAAETIRAACPTSLALTAPGRLASMEQRIEAMKAGLDIIQPAMEKFYSLLNDE 429 Query: 322 QKARLNALAENQRKEAAARDPNATVAQSCGAAQPA-MQEWPTGEIDARLQLSDTQRGALQ 380 QKA+L ALA R A+ +A QSCG + WPT EI+ RLQ ++ QR L Sbjct: 430 QKAKLTALAP--RNPQPAKTESANADQSCGITSLSDAVAWPTDEINKRLQPNEEQRAKLT 487 Query: 381 VLQDASADAARKLKAACQTNEAMTPPARLAFVAKRLDVMLQAVKDVRAALENFYATLSDE 440 LQDA+ AA LKA CQ + A+TPPARLA +RLD +L AVK V AAL +FY TLSDE Sbjct: 488 ALQDATFKAAESLKATCQPSAALTPPARLAAAGQRLDALLGAVKSVHAALNDFYGTLSDE 547 Query: 441 QKAQFEAIGPKRS 453 QKAQFEAIGP RS Sbjct: 548 QKAQFEAIGPARS 560 >ref|YP_002288422.1| hypothetical protein OCAR_5425 [Oligotropha carboxidovorans OM5] gb|ACI92557.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] Length = 470 Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 194/373 (52%), Positives = 231/373 (61%), Gaps = 27/373 (7%) Query: 106 MRNTFNSLSRSGALRNGRLLSNPAARAQIAAAAALAGWHGGAVANGWWQHPGGG---YGW 162 +R S GAL N L NPAARA + A+AA AGWH G + G YGW Sbjct: 54 VRQGLRSREVRGALGNRNALRNPAARAALVASAATAGWHNGRRHHHHRGWWRHGRGGYGW 113 Query: 163 VGPLFWPFAYNDIYDYAIWGDDIG--FWGYGYPDIYAGIFGPYGYDDLRGYLPERRTGR- 219 VGPLFWPFAY D+YDY WG D G FW YGY DIYAG+F PYGYD L GYLP +R Sbjct: 114 VGPLFWPFAYYDLYDYGFWGYDDGYAFWDYGYGDIYAGLFSPYGYDTLTGYLPSQRRATT 173 Query: 220 ------------------RYRGGGRIEQMCGNDSRSVAGLPVDQIADTVQPTEAQSAALG 261 R G + +MCG DS +AGLP+D+I + P +AQ A L Sbjct: 174 TAARSGSGSSSAPAKDQARVHEGDELARMCGADSGDIAGLPIDKIQQAISPDDAQRATLD 233 Query: 262 ELGNASLAAAQVIRAACPAQVVLTAPNRLAAMQQRIEAMVTAVGIVKPPLEKFYGLLDDE 321 EL NAS+ AA+ IRAACP + LTAP RLA+M+QRIEAM + I++P +EKFY LL+DE Sbjct: 234 ELANASVKAAETIRAACPTSLALTAPGRLASMEQRIEAMKAGLDIIQPAMEKFYSLLNDE 293 Query: 322 QKARLNALAENQRKEAAARDPNATVAQSCGAAQPA-MQEWPTGEIDARLQLSDTQRGALQ 380 QKA+L ALA R A+ +A QSCG + WPT EI+ RLQ ++ QR L Sbjct: 294 QKAKLTALAP--RNPQPAKTESANADQSCGITSLSDAVAWPTDEINKRLQPNEEQRAKLT 351 Query: 381 VLQDASADAARKLKAACQTNEAMTPPARLAFVAKRLDVMLQAVKDVRAALENFYATLSDE 440 LQDA+ AA LKA CQ + A+TPPARLA +RLD +L AVK V AAL +FY TLSDE Sbjct: 352 ALQDATFKAAESLKATCQPSAALTPPARLAAAGQRLDALLGAVKSVHAALNDFYGTLSDE 411 Query: 441 QKAQFEAIGPKRS 453 QKAQFEAIGP RS Sbjct: 412 QKAQFEAIGPARS 424 >ref|YP_576466.1| hypothetical protein Nham_1163 [Nitrobacter hamburgensis X14] gb|ABE62006.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 314 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 156/304 (51%), Positives = 199/304 (65%), Gaps = 17/304 (5%) Query: 166 LFWPFAYNDIYDYAIWGDDI--GFWGYGYPDIYAGIFGPYGYDDLRGY---LPERRTGRR 220 +FWPFA+ DIYDYA WG FW YGYPD+YAGIF PYGYD+L GY LP +G R Sbjct: 1 MFWPFAFYDIYDYAFWGSPYYDPFWDYGYPDLYAGIFVPYGYDELMGYAGYLPRYASGGR 60 Query: 221 YRGGG----------RIEQMCGNDSRSVAGLPVDQIADTVQPTEAQSAALGELGNASLAA 270 ++ QMCG D R +AGLP++ + +QP EAQ AAL EL +AS A Sbjct: 61 SNADAYAYVPPSNQAKLMQMCGEDGRMIAGLPIESVQSAIQPNEAQRAALDELVSASEKA 120 Query: 271 AQVIRAACPAQVVLTAPNRLAAMQQRIEAMVTAVGIVKPPLEKFYGLLDDEQKARLNALA 330 A ++A+CP V LTAP RL MQQRIEAM+ AV +V+PPL+ FYGLL DEQKARLN LA Sbjct: 121 AASLKASCPTDVALTAPRRLEVMQQRIEAMIAAVQMVQPPLKNFYGLLSDEQKARLNGLA 180 Query: 331 ENQRKEAAARDPNATVAQSCGAAQPAMQEWPTGEIDARLQLSDTQRGALQVLQDASADAA 390 +++ A + + Q+C AQ + WP I+ ++ ++ Q L LQ A+A AA Sbjct: 181 TTRQRPARPTERAVSAGQACDVAQSGLTSWPAAMIEQSVKPTEQQHIHLDALQSAAARAA 240 Query: 391 RKLKAACQT--NEAMTPPARLAFVAKRLDVMLQAVKDVRAALENFYATLSDEQKAQFEAI 448 LKA+CQ+ + +TPPARLA V KRLD+MLQAVK V A+ +FY +L+DEQKA F+AI Sbjct: 241 DMLKASCQSQAEDGLTPPARLATVGKRLDIMLQAVKAVHIAMHDFYGSLTDEQKAAFDAI 300 Query: 449 GPKR 452 GPKR Sbjct: 301 GPKR 304