BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0006.p         (39 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobiu...    75   2e-12
ref|YP_781468.1| DNA polymerase III subunit alpha [Rhodopseudomo...    75   5e-12
ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizo...    74   7e-12
ref|YP_532303.1| DNA polymerase III subunit alpha [Rhodopseudomo...    74   9e-12
ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp....    74   9e-12

>ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50131.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110]
          Length = 1167

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/39 (94%), Positives = 38/39 (97%)

Query: 1    MMLDLETEVEMKLPGRYKVSPQIAGAIKAVAGVVDVQTL 39
            MMLDLETEVEMKLPGR+KVSPQIAGAIKAVAGVVDVQ L
Sbjct: 1129 MMLDLETEVEMKLPGRFKVSPQIAGAIKAVAGVVDVQQL 1167


>ref|YP_781468.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisA53]
 gb|ABJ06488.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53]
          Length = 1165

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 39/39 (100%)

Query: 1    MMLDLETEVEMKLPGRYKVSPQIAGAIKAVAGVVDVQTL 39
            MMLDLETEVEMKLPGR++VSPQIAGAIKAV+GVVDVQT+
Sbjct: 1127 MMLDLETEVEMKLPGRFRVSPQIAGAIKAVSGVVDVQTV 1165


>ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. BTAi1]
 gb|ABQ36554.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. BTAi1]
          Length = 1173

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/39 (92%), Positives = 37/39 (94%)

Query: 1    MMLDLETEVEMKLPGRYKVSPQIAGAIKAVAGVVDVQTL 39
            MMLDLETEVEMKLPGR+KVSPQIAGAIKAV GVVDVQ L
Sbjct: 1135 MMLDLETEVEMKLPGRFKVSPQIAGAIKAVTGVVDVQQL 1173


>ref|YP_532303.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB18]
 gb|ABD87984.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB18]
          Length = 1185

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 38/39 (97%)

Query: 1    MMLDLETEVEMKLPGRYKVSPQIAGAIKAVAGVVDVQTL 39
            MMLDLETEVEMKLPGR++VSPQIAGAIKAV GVVDVQT+
Sbjct: 1147 MMLDLETEVEMKLPGRFRVSPQIAGAIKAVQGVVDVQTV 1185


>ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
 gb|EFI50184.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
          Length = 1135

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 38/39 (97%)

Query: 1    MMLDLETEVEMKLPGRYKVSPQIAGAIKAVAGVVDVQTL 39
            MMLDLETEV+MKLPGR+KVSPQIAGA+KA+ GVVDVQTL
Sbjct: 1097 MMLDLETEVDMKLPGRFKVSPQIAGALKAITGVVDVQTL 1135