BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0098.0005.p (330 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001206117.1| 30S ribosomal protein S2 [Bradyrhizobium sp.... 627 e-178 ref|YP_001240455.1| 30S ribosomal protein S2 [Bradyrhizobium sp.... 625 e-177 ref|ZP_01047959.1| 30S ribosomal protein S2 [Nitrobacter sp. Nb-... 624 e-177 ref|YP_576970.1| 30S ribosomal protein S2 [Nitrobacter hamburgen... 623 e-176 ref|NP_771501.1| 30S ribosomal protein S2 [Bradyrhizobium japoni... 618 e-175 >ref|YP_001206117.1| 30S ribosomal protein S2 [Bradyrhizobium sp. ORS 278] sp|A4YVG6.1|RS2_BRASO RecName: Full=30S ribosomal protein S2 emb|CAL77892.1| 30S ribosomal protein S2 [Bradyrhizobium sp. ORS 278] Length = 329 Score = 627 bits (1617), Expect = e-178, Method: Compositional matrix adjust. Identities = 302/329 (91%), Positives = 317/329 (96%) Query: 1 MSLPEFNMRQLLEAGVHFGHQAHRWNPKMQDYIFGARNNIHIIDLAQTVPMLHRALQAVS 60 M+LPEF MRQLLEAGVHFGHQ+HRWNPKM DYIFGARNNIHIIDLAQTVP+LH ALQAVS Sbjct: 1 MALPEFTMRQLLEAGVHFGHQSHRWNPKMADYIFGARNNIHIIDLAQTVPLLHTALQAVS 60 Query: 61 DTVAKGGRILFVGTKRSAQDGVADAAKRSAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 DTVAKGGRILFVGTKR AQD VADAAKR AQYFVNSRWLGGTLTNWKTISASIKRLRHLD Sbjct: 61 DTVAKGGRILFVGTKRQAQDNVADAAKRCAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 Query: 121 DVLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR 180 +VLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR Sbjct: 121 EVLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR 180 Query: 181 LNIPVAAIVDTNSDPKGITYVVPGNDDAGRAISLYCDLVARAAIDGISRAQGESGIDIGA 240 LNIPVAAIVDTN DPKGITYVVPGNDDAGRAISLYCDL+ARAAIDGISRAQGE GID+GA Sbjct: 181 LNIPVAAIVDTNCDPKGITYVVPGNDDAGRAISLYCDLIARAAIDGISRAQGELGIDVGA 240 Query: 241 SATPVQEDLPAAAPSGFQGLAGPRGTADNLKKLTGVSGAIEKKLNDLGIFHYWQLAELDH 300 SA P++EDLPAA+ S FQGL GPRGTAD+LKKLTGVSGAIEKKLNDLGIFH+WQLAEL+H Sbjct: 241 SAAPLEEDLPAASASTFQGLPGPRGTADDLKKLTGVSGAIEKKLNDLGIFHFWQLAELNH 300 Query: 301 DTAHKIGEEVGLPSRADAWVAQAKTLAEA 329 DTAH+IGEEVGLPSRADAWVAQAK+LA+A Sbjct: 301 DTAHQIGEEVGLPSRADAWVAQAKSLADA 329 >ref|YP_001240455.1| 30S ribosomal protein S2 [Bradyrhizobium sp. BTAi1] sp|A5EK55.1|RS2_BRASB RecName: Full=30S ribosomal protein S2 gb|ABQ36549.1| SSU ribosomal protein S2P [Bradyrhizobium sp. BTAi1] Length = 330 Score = 625 bits (1611), Expect = e-177, Method: Compositional matrix adjust. Identities = 304/330 (92%), Positives = 317/330 (96%), Gaps = 1/330 (0%) Query: 1 MSLPEFNMRQLLEAGVHFGHQAHRWNPKMQDYIFGARNNIHIIDLAQTVPMLHRALQAVS 60 M+LPEF MRQLLEAGVHFGHQ+HRWNPKM DYIFGARNNIHIIDLAQTVP+LH ALQAVS Sbjct: 1 MALPEFTMRQLLEAGVHFGHQSHRWNPKMADYIFGARNNIHIIDLAQTVPLLHTALQAVS 60 Query: 61 DTVAKGGRILFVGTKRSAQDGVADAAKRSAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 DTVAKGGRILFVGTKR AQD VADAAKR AQYFVNSRWLGGTLTNWKTISASIKRLRHLD Sbjct: 61 DTVAKGGRILFVGTKRQAQDNVADAAKRCAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 Query: 121 DVLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR 180 +VLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR Sbjct: 121 EVLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR 180 Query: 181 LNIPVAAIVDTNSDPKGITYVVPGNDDAGRAISLYCDLVARAAIDGISRAQGESGIDIGA 240 LNIPVAAIVDTN DPKGITYVVPGNDDAGRAISLYCDL+ARAAIDGISRAQGE GIDIGA Sbjct: 181 LNIPVAAIVDTNCDPKGITYVVPGNDDAGRAISLYCDLIARAAIDGISRAQGELGIDIGA 240 Query: 241 SATPVQEDLPAA-APSGFQGLAGPRGTADNLKKLTGVSGAIEKKLNDLGIFHYWQLAELD 299 SA P++E+LPAA A S FQGL GPRGTAD+LKKLTGVSGAIEKKLNDLGIFH+WQLAELD Sbjct: 241 SAAPLEEELPAATAASTFQGLPGPRGTADDLKKLTGVSGAIEKKLNDLGIFHFWQLAELD 300 Query: 300 HDTAHKIGEEVGLPSRADAWVAQAKTLAEA 329 HDTAH+IGEEVGLPSRADAWVAQAK+LA+A Sbjct: 301 HDTAHQIGEEVGLPSRADAWVAQAKSLADA 330 >ref|ZP_01047959.1| 30S ribosomal protein S2 [Nitrobacter sp. Nb-311A] gb|EAQ34093.1| 30S ribosomal protein S2 [Nitrobacter sp. Nb-311A] Length = 332 Score = 624 bits (1608), Expect = e-177, Method: Compositional matrix adjust. Identities = 301/332 (90%), Positives = 319/332 (96%), Gaps = 2/332 (0%) Query: 1 MSLPEFNMRQLLEAGVHFGHQAHRWNPKMQDYIFGARNNIHIIDLAQTVPMLHRALQAVS 60 M+LPEF MRQLLEAGVHFGHQ+HRWNPKM +YIFGARNNIHIIDLAQTVP++HRALQAVS Sbjct: 1 MALPEFTMRQLLEAGVHFGHQSHRWNPKMAEYIFGARNNIHIIDLAQTVPLMHRALQAVS 60 Query: 61 DTVAKGGRILFVGTKRSAQDGVADAAKRSAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 DTVAKGGRILFVGTKR AQDGVADAAKRSAQYFVNSRWLGGTLTNWKTIS SIKRLRHLD Sbjct: 61 DTVAKGGRILFVGTKRQAQDGVADAAKRSAQYFVNSRWLGGTLTNWKTISGSIKRLRHLD 120 Query: 121 DVLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR 180 +VLSSG+AN+YTKKERLTLQRERDKLDRSLGGIKDMGGLPD+IFVIDTNKEDIAIQEAQR Sbjct: 121 EVLSSGDANAYTKKERLTLQRERDKLDRSLGGIKDMGGLPDLIFVIDTNKEDIAIQEAQR 180 Query: 181 LNIPVAAIVDTNSDPKGITYVVPGNDDAGRAISLYCDLVARAAIDGISRAQGESGIDIGA 240 LNIPVAAIVDTN DPKGITY+VPGNDDAGRAISLYCDL+ARAAIDGISRAQG+SGID+GA Sbjct: 181 LNIPVAAIVDTNCDPKGITYIVPGNDDAGRAISLYCDLIARAAIDGISRAQGDSGIDVGA 240 Query: 241 SATPVQEDLPAAA-PSGFQGLAGPRGTADNLKKLTGVSGAIEKKLNDLGIFHYWQLAELD 299 S PVQE+LPAAA P+GFQGLAGPRG AD+LKKLTGVSGAIEKK NDLGIFHYWQLAELD Sbjct: 241 SVEPVQEELPAAAQPAGFQGLAGPRGVADDLKKLTGVSGAIEKKFNDLGIFHYWQLAELD 300 Query: 300 HDTAHKIGEEVGLPSRADAWVAQAKTL-AEAE 330 HDTAH+IGEEVGLPSRAD WVAQAK + AEAE Sbjct: 301 HDTAHRIGEEVGLPSRADGWVAQAKAMTAEAE 332 >ref|YP_576970.1| 30S ribosomal protein S2 [Nitrobacter hamburgensis X14] sp|Q1QMN7.1|RS2_NITHX RecName: Full=30S ribosomal protein S2 gb|ABE62510.1| SSU ribosomal protein S2P [Nitrobacter hamburgensis X14] Length = 332 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 303/332 (91%), Positives = 318/332 (95%), Gaps = 2/332 (0%) Query: 1 MSLPEFNMRQLLEAGVHFGHQAHRWNPKMQDYIFGARNNIHIIDLAQTVPMLHRALQAVS 60 M+LPEF+MRQLLEAGVHFGHQ+HRWNPKM DYIFGARNNIHIIDLAQTVP+LHRALQAVS Sbjct: 1 MALPEFSMRQLLEAGVHFGHQSHRWNPKMADYIFGARNNIHIIDLAQTVPLLHRALQAVS 60 Query: 61 DTVAKGGRILFVGTKRSAQDGVADAAKRSAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 DTVAKGGRILFVGTKR AQDGVADAAKRSAQYFVNSRWLGGTLTNWKTIS SIKRLRHLD Sbjct: 61 DTVAKGGRILFVGTKRQAQDGVADAAKRSAQYFVNSRWLGGTLTNWKTISGSIKRLRHLD 120 Query: 121 DVLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR 180 +VLSSG+AN+YTKKERLTLQRERDKLDRSLGGIKDMGGLPD+IFVIDTNKEDIAIQEAQR Sbjct: 121 EVLSSGDANAYTKKERLTLQRERDKLDRSLGGIKDMGGLPDLIFVIDTNKEDIAIQEAQR 180 Query: 181 LNIPVAAIVDTNSDPKGITYVVPGNDDAGRAISLYCDLVARAAIDGISRAQGESGIDIGA 240 LNIPVAAIVDTN DPKGITY+VPGNDDAGRAISLYCDL+ARAAIDGISRAQG+SGIDIGA Sbjct: 181 LNIPVAAIVDTNCDPKGITYLVPGNDDAGRAISLYCDLIARAAIDGISRAQGDSGIDIGA 240 Query: 241 SATPVQEDLPAAA-PSGFQGLAGPRGTADNLKKLTGVSGAIEKKLNDLGIFHYWQLAELD 299 S PVQE+LPAAA P+GFQGLAGPRG AD+LKKLTGVSG IEKK NDLGIFHYWQLAE D Sbjct: 241 SVQPVQEELPAAAQPAGFQGLAGPRGVADDLKKLTGVSGEIEKKFNDLGIFHYWQLAEFD 300 Query: 300 HDTAHKIGEEVGLPSRADAWVAQAKTL-AEAE 330 H+TAHKIGEEVGLPSRAD WVAQAK L AEAE Sbjct: 301 HETAHKIGEEVGLPSRADGWVAQAKALTAEAE 332 >ref|NP_771501.1| 30S ribosomal protein S2 [Bradyrhizobium japonicum USDA 110] sp|Q89KP3.1|RS2_BRAJA RecName: Full=30S ribosomal protein S2 dbj|BAC50126.1| 30S ribosomal protein S2 [Bradyrhizobium japonicum USDA 110] Length = 331 Score = 618 bits (1594), Expect = e-175, Method: Compositional matrix adjust. Identities = 300/331 (90%), Positives = 315/331 (95%), Gaps = 1/331 (0%) Query: 1 MSLPEFNMRQLLEAGVHFGHQAHRWNPKMQDYIFGARNNIHIIDLAQTVPMLHRALQAVS 60 M+LP+F MRQLLEAGVHFGHQ+HRWNPKM +IFG RNNIHI+DLAQTVPMLH ALQAVS Sbjct: 1 MALPDFTMRQLLEAGVHFGHQSHRWNPKMAPFIFGTRNNIHIVDLAQTVPMLHHALQAVS 60 Query: 61 DTVAKGGRILFVGTKRSAQDGVADAAKRSAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 DTVAKGGRILFVGTKR AQDGVADAAKR AQYFVNSRWLGGTLTNWKTISASIKRLRHLD Sbjct: 61 DTVAKGGRILFVGTKRQAQDGVADAAKRCAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 Query: 121 DVLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR 180 DVL+ GEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPD+IFVIDTNKEDIAIQEAQR Sbjct: 121 DVLAGGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDLIFVIDTNKEDIAIQEAQR 180 Query: 181 LNIPVAAIVDTNSDPKGITYVVPGNDDAGRAISLYCDLVARAAIDGISRAQGESGIDIGA 240 LNIPVAAIVDTNSDPKGITYVVPGNDDAGRAISLYCDL+ARAAIDGISRAQG+SGIDIGA Sbjct: 181 LNIPVAAIVDTNSDPKGITYVVPGNDDAGRAISLYCDLIARAAIDGISRAQGDSGIDIGA 240 Query: 241 SATPVQEDLPAAAPSGFQGLAGPRGTADNLKKLTGVSGAIEKKLNDLGIFHYWQLAELDH 300 SA P+ E+LPAA+ SGFQGLAGPRGTAD+LKKL GVSGAIEKK NDLGIFH+WQLAELDH Sbjct: 241 SARPLAEELPAASSSGFQGLAGPRGTADDLKKLPGVSGAIEKKFNDLGIFHFWQLAELDH 300 Query: 301 DTAHKIGEEVGLPSRADAWVAQAKTL-AEAE 330 DTAH IGEEVGLPSRADAWVA+AK L AEAE Sbjct: 301 DTAHTIGEEVGLPSRADAWVAKAKALTAEAE 331