BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0098.0003.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_577858.1| cytochrome c biogenesis protein, transmembrane ... 417 e-115 ref|YP_780574.1| cytochrome c biogenesis protein, transmembrane ... 415 e-114 ref|ZP_01046566.1| Cytochrome c biogenesis protein, transmembran... 413 e-113 ref|YP_318820.1| cytochrome c biogenesis protein, transmembrane ... 409 e-112 ref|YP_004107884.1| cytochrome c biogenesis transmembrane protei... 404 e-111 >ref|YP_577858.1| cytochrome c biogenesis protein, transmembrane region [Nitrobacter hamburgensis X14] gb|ABE63398.1| cytochrome c biogenesis protein, transmembrane region [Nitrobacter hamburgensis X14] Length = 244 Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/243 (84%), Positives = 226/243 (93%) Query: 1 MHDVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEQVNQDGATAASKRAVMTAALM 60 +HDVS+PAAL+AGLVSFLSPCVLPLVPPYL+YLTGATIE V+ D SKRAVM AAL+ Sbjct: 2 IHDVSVPAALVAGLVSFLSPCVLPLVPPYLVYLTGATIEHVSHDETAKVSKRAVMLAALV 61 Query: 61 FVLGFSTVFVALGASASFVGGLVRAWSAELSILAGIVIIIMGLHFLGVTRIGLLMREGRL 120 FVLGFSTVFVALGASASF+GGL+RAWSA+LSI+AGIVII+MGLHFLG+TRIG LMREGRL Sbjct: 62 FVLGFSTVFVALGASASFIGGLIRAWSAQLSIVAGIVIIVMGLHFLGLTRIGFLMREGRL 121 Query: 121 TAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSIAAAEATVTKGAGLLAVYSAGLGIP 180 TAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILS+AAAEATV KGAGLLAVYSAGLGIP Sbjct: 122 TAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSVAAAEATVVKGAGLLAVYSAGLGIP 181 Query: 181 FLLAAFMVKQFSSLFARMKRHLDTVERVMGVLMVVTGIGFLTGAVSSVSVWLLETFPALQ 240 FLLAA M++QF+SL RMKRHL+TVERVMGVLMV+TGI FLTG +S+VS+WLLE FPALQ Sbjct: 182 FLLAALMIEQFASLLKRMKRHLNTVERVMGVLMVLTGIAFLTGTISNVSIWLLEAFPALQ 241 Query: 241 NIG 243 N G Sbjct: 242 NFG 244 >ref|YP_780574.1| cytochrome c biogenesis protein, transmembrane region [Rhodopseudomonas palustris BisA53] gb|ABJ05594.1| cytochrome c biogenesis protein, transmembrane region [Rhodopseudomonas palustris BisA53] Length = 244 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 212/243 (87%), Positives = 226/243 (93%) Query: 1 MHDVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEQVNQDGATAASKRAVMTAALM 60 +HDVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIE V +ASKRAVM +ALM Sbjct: 2 IHDVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEHVATGEKDSASKRAVMISALM 61 Query: 61 FVLGFSTVFVALGASASFVGGLVRAWSAELSILAGIVIIIMGLHFLGVTRIGLLMREGRL 120 FVLGFSTVFVALGASAS VGGL+RAWSAELSI AGIVII+MGLHFLG+T+IGLLMREGRL Sbjct: 62 FVLGFSTVFVALGASASLVGGLIRAWSAELSIAAGIVIILMGLHFLGLTKIGLLMREGRL 121 Query: 121 TAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSIAAAEATVTKGAGLLAVYSAGLGIP 180 PKPVGLWGAYVMGLAFAFGWTPCIGPILAAILS+AAAEATV KGAGLLAVYSAGLGIP Sbjct: 122 PIPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSVAAAEATVAKGAGLLAVYSAGLGIP 181 Query: 181 FLLAAFMVKQFSSLFARMKRHLDTVERVMGVLMVVTGIGFLTGAVSSVSVWLLETFPALQ 240 FLLAA MV+QFSSLFARMKRHL TVERVMGVLM++TGIGFLTGAV++VS+WLLETFPAL Sbjct: 182 FLLAALMVEQFSSLFARMKRHLATVERVMGVLMILTGIGFLTGAVTNVSIWLLETFPALG 241 Query: 241 NIG 243 N G Sbjct: 242 NFG 244 >ref|ZP_01046566.1| Cytochrome c biogenesis protein, transmembrane region [Nitrobacter sp. Nb-311A] gb|EAQ35402.1| Cytochrome c biogenesis protein, transmembrane region [Nitrobacter sp. Nb-311A] Length = 244 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/243 (84%), Positives = 225/243 (92%) Query: 1 MHDVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEQVNQDGATAASKRAVMTAALM 60 +HDVS+PAA++AGLVSFLSPCVLPLVPPYLIYLTGATIE V+ D + ASKRAVM AALM Sbjct: 2 IHDVSVPAAMVAGLVSFLSPCVLPLVPPYLIYLTGATIEHVSNDESPKASKRAVMLAALM 61 Query: 61 FVLGFSTVFVALGASASFVGGLVRAWSAELSILAGIVIIIMGLHFLGVTRIGLLMREGRL 120 FV GFSTVFVALGASASFVG L+RAWSA+LSI+AGIVII+MGLHFLG+TRIG LMREGRL Sbjct: 62 FVFGFSTVFVALGASASFVGSLIRAWSAQLSIVAGIVIIVMGLHFLGLTRIGFLMREGRL 121 Query: 121 TAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSIAAAEATVTKGAGLLAVYSAGLGIP 180 TAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILS+AAAEATV KGAGLLAVYSAGLGIP Sbjct: 122 TAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSVAAAEATVVKGAGLLAVYSAGLGIP 181 Query: 181 FLLAAFMVKQFSSLFARMKRHLDTVERVMGVLMVVTGIGFLTGAVSSVSVWLLETFPALQ 240 FLLAAFM++QFSSL RMKRHL +ER +GVLMV+TGI FLTG +S+VS+WLLETFPALQ Sbjct: 182 FLLAAFMIEQFSSLLNRMKRHLIKIERGIGVLMVLTGIAFLTGTISNVSIWLLETFPALQ 241 Query: 241 NIG 243 N G Sbjct: 242 NFG 244 >ref|YP_318820.1| cytochrome c biogenesis protein, transmembrane region [Nitrobacter winogradskyi Nb-255] gb|ABA05468.1| Cytochrome c biogenesis protein, transmembrane region [Nitrobacter winogradskyi Nb-255] Length = 244 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 202/243 (83%), Positives = 222/243 (91%) Query: 1 MHDVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEQVNQDGATAASKRAVMTAALM 60 +HDVS+PAA++AGLVSFLSPCVLPLVPPYLIYLTGATIE V+ D SKRAVM AALM Sbjct: 2 IHDVSVPAAMVAGLVSFLSPCVLPLVPPYLIYLTGATIEHVSHDETAKTSKRAVMLAALM 61 Query: 61 FVLGFSTVFVALGASASFVGGLVRAWSAELSILAGIVIIIMGLHFLGVTRIGLLMREGRL 120 FV GFSTVFVALGASASFVG +RAWSAELSI+AGIVIIIMGLHFLG+TRIG LMREGRL Sbjct: 62 FVFGFSTVFVALGASASFVGSFIRAWSAELSIVAGIVIIIMGLHFLGLTRIGFLMREGRL 121 Query: 121 TAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSIAAAEATVTKGAGLLAVYSAGLGIP 180 TAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILS+AAAEATV KGAGLLAVYSAGLGIP Sbjct: 122 TAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSVAAAEATVVKGAGLLAVYSAGLGIP 181 Query: 181 FLLAAFMVKQFSSLFARMKRHLDTVERVMGVLMVVTGIGFLTGAVSSVSVWLLETFPALQ 240 FLLAA M+++FSSLF R+KRHL +ER +GVLMV+TG+ FLTG +S+VS+WLLETFPALQ Sbjct: 182 FLLAALMIERFSSLFNRLKRHLTKIERGIGVLMVLTGVAFLTGTISNVSIWLLETFPALQ 241 Query: 241 NIG 243 N G Sbjct: 242 NFG 244 >ref|YP_004107884.1| cytochrome c biogenesis transmembrane protein [Rhodopseudomonas palustris DX-1] gb|ADU43151.1| cytochrome c biogenesis protein transmembrane region [Rhodopseudomonas palustris DX-1] Length = 244 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/243 (83%), Positives = 222/243 (91%) Query: 1 MHDVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEQVNQDGATAASKRAVMTAALM 60 +HDVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIE V D A +SKRAVM +A M Sbjct: 2 IHDVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEHVAADEAERSSKRAVMISAAM 61 Query: 61 FVLGFSTVFVALGASASFVGGLVRAWSAELSILAGIVIIIMGLHFLGVTRIGLLMREGRL 120 FVLGFSTVFVALGASAS VGGL+RAWSAEL+I+AGIVII+MGLHFLG+TRI +LMREGRL Sbjct: 62 FVLGFSTVFVALGASASLVGGLIRAWSAELAIVAGIVIILMGLHFLGLTRINILMREGRL 121 Query: 121 TAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSIAAAEATVTKGAGLLAVYSAGLGIP 180 PKPVGLWGAYVMGLAFAFGWTPCIGPILAAILS+AAAEATV KGAGLLAVYS GLG+P Sbjct: 122 PIPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSVAAAEATVAKGAGLLAVYSLGLGVP 181 Query: 181 FLLAAFMVKQFSSLFARMKRHLDTVERVMGVLMVVTGIGFLTGAVSSVSVWLLETFPALQ 240 FLLAA M++QFS LFAR+K+HL T+ERVMGVLM+ TGIGFLTGA+S VS+WLL TFPAL Sbjct: 182 FLLAALMIEQFSGLFARIKKHLATIERVMGVLMIFTGIGFLTGAISDVSIWLLNTFPALG 241 Query: 241 NIG 243 NIG Sbjct: 242 NIG 244