BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0034.p (274 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004716686.1| TRAP dicarboxylate transporter, DctP subunit... 433 e-119 ref|YP_002947525.1| TRAP dicarboxylate transporter, DctP subunit... 370 e-100 ref|YP_001205825.1| putative TRAP-type C4-dicarboxylate transpor... 365 3e-99 ref|YP_001240066.1| putative TRAP-type C4-dicarboxylate transpor... 365 4e-99 ref|YP_781793.1| TRAP dicarboxylate transporter subunit DctP [Rh... 365 6e-99 >ref|YP_004716686.1| TRAP dicarboxylate transporter, DctP subunit protein [Sinorhizobium fredii GR64] gb|AEI89549.1| TRAP dicarboxylate transporter, DctP subunit protein [Sinorhizobium fredii GR64] Length = 340 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 199/274 (72%), Positives = 232/274 (84%) Query: 1 VEINVFPNNQLGGDTDMLSQLRAGGLDLFLNSGINVLSTIVPSASIYGLGFIFPDYDAVW 60 VE+ V+PNNQLG DTDMLSQ+RAGG+DLFLNSGINVLST+VP+ASIYGLGFIFPDYD VW Sbjct: 67 VELQVYPNNQLGSDTDMLSQVRAGGIDLFLNSGINVLSTMVPAASIYGLGFIFPDYDTVW 126 Query: 61 KAMDGELGDALRLAIGKANLVPMGKMWDNGFRNITTSAKQINTPADLKGVKIRVPVGALW 120 K MDGELG AL I K NL+PM KMWDNGFR+ITTS +N+PADL G+KIRVPVGALW Sbjct: 127 KTMDGELGAALHKLIEKVNLLPMEKMWDNGFRHITTSTHPVNSPADLAGMKIRVPVGALW 186 Query: 121 TSMFQAFGAAPTAINYSELYSALQTKIVDGQENSLANIFTANLFEVQKYCALTGHMWDAF 180 TSMFQ FGAAP +IN++ELYSALQTK+VDGQENSLANI TAN+ EVQKYCALT HMWDAF Sbjct: 187 TSMFQTFGAAPASINFNELYSALQTKVVDGQENSLANIKTANIVEVQKYCALTRHMWDAF 246 Query: 181 FCVANKRNWEAIPEDLRKIIAAAINDAAMAERTDMATLATSLRGDLSKKGLIFNEPDVAA 240 FCVANKRNW ++P D++++++ IN AA+ ER DMA L+ SL+ L+K+GL+FN+PD A Sbjct: 247 FCVANKRNWASLPADVQEVVSRNINLAALDERQDMAKLSESLKDVLAKQGLVFNQPDTEA 306 Query: 241 FREALRTAGFYKEWRAKYGEELWTTLERTTGKLT 274 FR+ LR GFY WR KYGEELW LE+T GKLT Sbjct: 307 FRQKLRDGGFYTGWREKYGEELWAILEKTVGKLT 340 >ref|YP_002947525.1| TRAP dicarboxylate transporter, DctP subunit [Variovorax paradoxus S110] gb|ACS22259.1| TRAP dicarboxylate transporter, DctP subunit [Variovorax paradoxus S110] Length = 337 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 171/273 (62%), Positives = 215/273 (78%), Gaps = 1/273 (0%) Query: 1 VEINVFPNNQLGGDTDMLSQLRAGGLDLFLNSGINVLSTIVPSASIYGLGFIFPDYDAVW 60 V+I +FP+NQLG DTD+LSQLR+GG++ F SG+ +LST+VPSASI G+GF F DY +VW Sbjct: 65 VDIQIFPSNQLGSDTDVLSQLRSGGVEFFTLSGL-ILSTLVPSASISGVGFAFNDYASVW 123 Query: 61 KAMDGELGDALRLAIGKANLVPMGKMWDNGFRNITTSAKQINTPADLKGVKIRVPVGALW 120 KAMDGELG +R I KAN+VPM K+WDNGFR IT+S++ I P D+KG KIRVPV LW Sbjct: 124 KAMDGELGAHIRQQIAKANIVPMEKIWDNGFRQITSSSRAIAAPQDMKGFKIRVPVSPLW 183 Query: 121 TSMFQAFGAAPTAINYSELYSALQTKIVDGQENSLANIFTANLFEVQKYCALTGHMWDAF 180 TSMF+A AAPT+IN++E+YSALQTKIVDGQEN LA I TA L+EVQKYC+L+ HMWD F Sbjct: 184 TSMFKALDAAPTSINFAEVYSALQTKIVDGQENPLAIIATAKLYEVQKYCSLSNHMWDGF 243 Query: 181 FCVANKRNWEAIPEDLRKIIAAAINDAAMAERTDMATLATSLRGDLSKKGLIFNEPDVAA 240 + +AN+R W+ +P DLR ++A IN A M ER D+A L L+ +L+ KG+ FN+PD AA Sbjct: 244 WFLANRRAWDKLPADLRTVVARHINAAGMKERADVAELNAGLQKELAAKGMAFNQPDAAA 303 Query: 241 FREALRTAGFYKEWRAKYGEELWTTLERTTGKL 273 FR+ LR AGFY EW+AKYG+E W LER+ GKL Sbjct: 304 FRDQLRKAGFYSEWKAKYGDEAWALLERSAGKL 336 >ref|YP_001205825.1| putative TRAP-type C4-dicarboxylate transport system binding periplasmic protein DctP [Bradyrhizobium sp. ORS 278] emb|CAL77600.1| putative TRAP-type C4-dicarboxylate transport system, periplasmic component (dctP-like) [Bradyrhizobium sp. ORS 278] Length = 331 Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 170/273 (62%), Positives = 214/273 (78%), Gaps = 1/273 (0%) Query: 2 EINVFPNNQLGGDTDMLSQLRAGGLDLFLNSGINVLSTIVPSASIYGLGFIFPDYDAVWK 61 ++ +FPNNQLG DTDMLSQ+R+GG++ F SG+ +L+T+VP+ASI G+GF FPDYD VWK Sbjct: 60 DLQIFPNNQLGSDTDMLSQIRSGGVEFFTLSGL-ILATLVPAASINGIGFAFPDYDTVWK 118 Query: 62 AMDGELGDALRLAIGKANLVPMGKMWDNGFRNITTSAKQINTPADLKGVKIRVPVGALWT 121 AMDG+LG +R I K+ L+ M K+WDNGFR T+S K IN P DLKG KIRVPV LWT Sbjct: 119 AMDGDLGAYVRGQITKSGLMVMDKIWDNGFRQTTSSTKPINGPDDLKGFKIRVPVSPLWT 178 Query: 122 SMFQAFGAAPTAINYSELYSALQTKIVDGQENSLANIFTANLFEVQKYCALTGHMWDAFF 181 SMF+AF AAP +IN+SE+YSALQTK+V+GQEN LA I TA L+EVQKYC+LT HMWD F+ Sbjct: 179 SMFKAFEAAPASINFSEVYSALQTKVVEGQENPLAIISTAKLYEVQKYCSLTNHMWDGFW 238 Query: 182 CVANKRNWEAIPEDLRKIIAAAINDAAMAERTDMATLATSLRGDLSKKGLIFNEPDVAAF 241 +AN+R WEA+P D+R I+A IN AA+ ER D+A L L+ DL+ KGL FN+P+VA F Sbjct: 239 FLANRRAWEAVPADMRAIVAKHINAAAVKEREDVAKLNAGLQQDLATKGLTFNQPNVAPF 298 Query: 242 REALRTAGFYKEWRAKYGEELWTTLERTTGKLT 274 R+ LRTAGFY EW+ KYG+E W LE+ GKL+ Sbjct: 299 RDKLRTAGFYAEWKGKYGDEAWALLEKAVGKLS 331 >ref|YP_001240066.1| putative TRAP-type C4-dicarboxylate transport system periplasmic protein [Bradyrhizobium sp. BTAi1] gb|ABQ36160.1| putative TRAP-type C4-dicarboxylate transport system, periplasmic component [Bradyrhizobium sp. BTAi1] Length = 331 Score = 365 bits (937), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 169/273 (61%), Positives = 214/273 (78%), Gaps = 1/273 (0%) Query: 2 EINVFPNNQLGGDTDMLSQLRAGGLDLFLNSGINVLSTIVPSASIYGLGFIFPDYDAVWK 61 ++ +FPNNQLG DTDMLSQ+R+GG++ F SG+ +L+T+VP+ASI G+GF FPDYD VWK Sbjct: 60 DLQIFPNNQLGSDTDMLSQIRSGGVEFFTLSGL-ILATLVPAASINGIGFAFPDYDTVWK 118 Query: 62 AMDGELGDALRLAIGKANLVPMGKMWDNGFRNITTSAKQINTPADLKGVKIRVPVGALWT 121 AMDG+LG +R I KA L+ M K+WDNGFR T+S K IN P DLKG KIRVPV LWT Sbjct: 119 AMDGDLGAYVRGQINKAGLMVMDKIWDNGFRQTTSSTKPINGPDDLKGFKIRVPVSPLWT 178 Query: 122 SMFQAFGAAPTAINYSELYSALQTKIVDGQENSLANIFTANLFEVQKYCALTGHMWDAFF 181 SMF+AF AAP +IN+SE+YSALQTK+V+GQEN LA I TA L+EVQKYC+LT HMWD F+ Sbjct: 179 SMFKAFEAAPASINFSEVYSALQTKVVEGQENPLAIISTAKLYEVQKYCSLTNHMWDGFW 238 Query: 182 CVANKRNWEAIPEDLRKIIAAAINDAAMAERTDMATLATSLRGDLSKKGLIFNEPDVAAF 241 +AN+R WEA+P D+R I+A IN AA+ ER D+A L L+ +L+ KGL FN+P+VA F Sbjct: 239 FLANRRAWEAVPADMRAIVAKHINAAAVKEREDVAKLNAGLQAELASKGLTFNQPNVAPF 298 Query: 242 REALRTAGFYKEWRAKYGEELWTTLERTTGKLT 274 R+ LR+AGFY EW+ KYG+E W LE+ GKL+ Sbjct: 299 RDKLRSAGFYAEWKGKYGDEAWALLEKAVGKLS 331 >ref|YP_781793.1| TRAP dicarboxylate transporter subunit DctP [Rhodopseudomonas palustris BisA53] gb|ABJ06813.1| TRAP dicarboxylate transporter, DctP subunit [Rhodopseudomonas palustris BisA53] Length = 339 Score = 365 bits (936), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 170/273 (62%), Positives = 212/273 (77%), Gaps = 1/273 (0%) Query: 1 VEINVFPNNQLGGDTDMLSQLRAGGLDLFLNSGINVLSTIVPSASIYGLGFIFPDYDAVW 60 VEI +FP+NQLG DTDMLSQ+R+GG++ F SG+ +L+T+VP+ASI G+GF FPDY+ VW Sbjct: 67 VEIQIFPSNQLGSDTDMLSQIRSGGVEFFTLSGL-ILATLVPAASINGIGFAFPDYETVW 125 Query: 61 KAMDGELGDALRLAIGKANLVPMGKMWDNGFRNITTSAKQINTPADLKGVKIRVPVGALW 120 KAMDGELG +R IGKANLV M K+WDNGFR T+S+K I P D KG KIRVPV LW Sbjct: 126 KAMDGELGAHVRGEIGKANLVVMDKIWDNGFRQTTSSSKPITGPDDFKGFKIRVPVSPLW 185 Query: 121 TSMFQAFGAAPTAINYSELYSALQTKIVDGQENSLANIFTANLFEVQKYCALTGHMWDAF 180 TSMF+AF A+P +IN+SE+YSALQTK+V+GQEN LA I TA L+EVQKYC+LT HMWD F Sbjct: 186 TSMFKAFDASPASINFSEVYSALQTKVVEGQENPLAIISTAKLYEVQKYCSLTNHMWDGF 245 Query: 181 FCVANKRNWEAIPEDLRKIIAAAINDAAMAERTDMATLATSLRGDLSKKGLIFNEPDVAA 240 + +ANKR WE +PEDLR I+A IN A + +R D+A L L+ DL+ KGL FN+P + Sbjct: 246 WFLANKRAWERLPEDLRAIVAKNINAAGINQRADVAKLNAGLKDDLAAKGLAFNQPAITP 305 Query: 241 FREALRTAGFYKEWRAKYGEELWTTLERTTGKL 273 FRE LR AGFY EW+ KYG++ W+ LE+ TG L Sbjct: 306 FREKLRKAGFYAEWKGKYGDQAWSLLEKATGSL 338