BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0033.p (620 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001527448.1| dicarboxylate transport trapT dctQ-M fusion ... 527 e-147 ref|YP_546899.1| TRAP dicarboxylate transporter subunit DctM [Po... 522 e-146 ref|YP_486298.1| TrapT dctQ-M fusion permease, dicarboxylate tra... 521 e-145 ref|YP_001240067.1| TRAP-type C4-dicarboxylate transporter small... 504 e-140 ref|YP_569851.1| TRAP C4-dicarboxylate transport system permease... 503 e-140 >ref|YP_001527448.1| dicarboxylate transport trapT dctQ-M fusion permease [Azorhizobium caulinodans ORS 571] dbj|BAF90530.1| dicarboxylate transport trapT dctQ-M fusion permease [Azorhizobium caulinodans ORS 571] Length = 631 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 270/382 (70%), Positives = 323/382 (84%) Query: 11 AVADGVDRLIGRLLEVCVSILLAAEILLLFAGVLARYVFLKPIIWSDELASMLFLWLVML 70 A A V+R++G L+E+ V+IL+AAEI++LF GV+ARYVF PI+WSDELAS+LFLWL ML Sbjct: 26 AAALAVERVLGALVEIPVAILVAAEIIVLFMGVVARYVFHTPIVWSDELASILFLWLAML 85 Query: 71 GSAIALRRGEHMRMTALFAFVSPRMRAQLDTIALAASLGLVVLLFPAALEYAIEEAIVRT 130 G+ +A RRGEHMRMTA+ A V+P +RA LD +A+ A+L ++L+FP ALEYA EE + T Sbjct: 86 GAVVAFRRGEHMRMTAVAAKVNPGLRAFLDVLAMTAALAFILLVFPHALEYAEEEVFILT 145 Query: 131 PAMDLSNAWRATAAPVGFGLMGIFALLRLVRLADTRLIFSSLGTVAFIVGLFWLLQPLFA 190 PA+++ NA RA A PVG GLM FA+LRLVR D +++ +L T ++ FWLL P Sbjct: 146 PALEIPNAVRAAALPVGLGLMIAFAVLRLVRHTDLKVVGVALLTTVAVIAAFWLLGPFLR 205 Query: 191 PLGNINLVIFFVVVVASAVFTGVPIAFSFGLATFGYLMLTTRTPPLIIVGRIDEGVSHLI 250 PLGN NL+IFFV VVA+ VF GVPIAF+FGLATFGYL LTTRTP +++VGR+DEG+SHLI Sbjct: 206 PLGNANLLIFFVGVVAACVFAGVPIAFAFGLATFGYLALTTRTPMMVLVGRMDEGMSHLI 265 Query: 251 LLSVPLFVFLGQLIEMTGMARAMVAFLASLLGHVRGGLLYVLVGAMYLVSGISGSKAADM 310 LLSVPLFVFLG LIEMTGMA+AMV FLASLLGHVRGGL YVLVGAMYLVSGISGSKAADM Sbjct: 266 LLSVPLFVFLGALIEMTGMAKAMVRFLASLLGHVRGGLHYVLVGAMYLVSGISGSKAADM 325 Query: 311 AAVAPVLFPEMKRRGAKEGDLVALLAATGAQTETIPPSIVLITIGSVTGVSIAALFTGGL 370 AAVAPVLFPEMK+RGAKEGDLVALL+ATGAQTETIPPS+VLITIGSVTGVSI+ALFTGG+ Sbjct: 326 AAVAPVLFPEMKQRGAKEGDLVALLSATGAQTETIPPSLVLITIGSVTGVSISALFTGGM 385 Query: 371 LPGVILAITLCCVIAWRYRNED 392 +PG++LA+TLC V+ WRYR E Sbjct: 386 VPGIVLAVTLCAVVWWRYRGEK 407 >ref|YP_546899.1| TRAP dicarboxylate transporter subunit DctM [Polaromonas sp. JS666] gb|ABE42001.1| TRAP C4-dicarboxylate transport system permease DctM subunit [Polaromonas sp. JS666] Length = 627 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 270/384 (70%), Positives = 321/384 (83%), Gaps = 2/384 (0%) Query: 12 VADGVDRLIGRLLEVCVSILLAAEILLLFAGVLARYVFLKPIIWSDELASMLFLWLVMLG 71 +A GVDR +G ++E + L+ AEI++LFAGV++RYVF +P++WSDELAS++FLWL MLG Sbjct: 21 LAHGVDRGLGAVVETIAAGLVLAEIIVLFAGVVSRYVFHQPLVWSDELASIMFLWLSMLG 80 Query: 72 SAIALRRGEHMRMTALFAFVSPRMRAQLDTIALAASLG-LVVLLFPAALEYAIEEAIVRT 130 + +ALRRGEHMRMTAL V P RA LDT+A+ ASL LV++LFPA EYA EE + T Sbjct: 81 AVVALRRGEHMRMTALVNHVQPHTRALLDTVAITASLAFLVLVLFPAG-EYAYEETFIVT 139 Query: 131 PAMDLSNAWRATAAPVGFGLMGIFALLRLVRLADTRLIFSSLGTVAFIVGLFWLLQPLFA 190 PA+++SN WRA+A PVG GLM I ALLRL+R++ + I +L A +V FWL QPL A Sbjct: 140 PALEISNGWRASAIPVGMGLMIIVALLRLLRISSFQQIALALAGTAAVVLAFWLAQPLLA 199 Query: 191 PLGNINLVIFFVVVVASAVFTGVPIAFSFGLATFGYLMLTTRTPPLIIVGRIDEGVSHLI 250 PLG +NLVIFFV+VVA+ VF+GVPIAFSF LATFGYL LTT+TP L++VGR+DEG+SHLI Sbjct: 200 PLGKVNLVIFFVLVVAANVFSGVPIAFSFALATFGYLALTTQTPLLVMVGRLDEGMSHLI 259 Query: 251 LLSVPLFVFLGQLIEMTGMARAMVAFLASLLGHVRGGLLYVLVGAMYLVSGISGSKAADM 310 LL+VPLF+FLG LIEMTGMA+AM+ FLASLLGHVRGGL YVL+GAMYLVSGISGSK ADM Sbjct: 260 LLAVPLFIFLGALIEMTGMAKAMIQFLASLLGHVRGGLSYVLIGAMYLVSGISGSKIADM 319 Query: 311 AAVAPVLFPEMKRRGAKEGDLVALLAATGAQTETIPPSIVLITIGSVTGVSIAALFTGGL 370 AA+APVLFPEMK+RGAK GDLVALL+ATGAQTETIPPSIVLITIGSVTGVSIAALFTGGL Sbjct: 320 AAIAPVLFPEMKKRGAKPGDLVALLSATGAQTETIPPSIVLITIGSVTGVSIAALFTGGL 379 Query: 371 LPGVILAITLCCVIAWRYRNEDRS 394 LP V+L LC V+ WRYR ED S Sbjct: 380 LPAVVLGAALCAVVWWRYRGEDLS 403 >ref|YP_486298.1| TrapT dctQ-M fusion permease, dicarboxylate transport [Rhodopseudomonas palustris HaA2] gb|ABD07387.1| TrapT dctQ-M fusion permease, dicarboxylate transport [Rhodopseudomonas palustris HaA2] Length = 627 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 278/395 (70%), Positives = 325/395 (82%) Query: 16 VDRLIGRLLEVCVSILLAAEILLLFAGVLARYVFLKPIIWSDELASMLFLWLVMLGSAIA 75 +D +G L+E+ ++L+ AEI++LFAGV++RYVF P+IWSDELAS+LFLWL M G+A+A Sbjct: 27 LDSGLGLLVEIPAALLVVAEIVVLFAGVVSRYVFHSPLIWSDELASILFLWLAMFGAAVA 86 Query: 76 LRRGEHMRMTALFAFVSPRMRAQLDTIALAASLGLVVLLFPAALEYAIEEAIVRTPAMDL 135 RRGEHMRMTAL A SPR+RA LD +A+ A+L ++L+ A +YA EE+ + TPA+ L Sbjct: 87 FRRGEHMRMTALVASASPRLRAFLDLVAICAALAFLLLIAAPAYDYAYEESYITTPALSL 146 Query: 136 SNAWRATAAPVGFGLMGIFALLRLVRLADTRLIFSSLGTVAFIVGLFWLLQPLFAPLGNI 195 SNAWRA A PVG LM +FALLRL+R D RL+ + TVA ++G FWL QPLF PLGN+ Sbjct: 147 SNAWRAAALPVGIVLMTLFALLRLIRFGDWRLVAGAALTVAVLIGAFWLAQPLFKPLGNL 206 Query: 196 NLVIFFVVVVASAVFTGVPIAFSFGLATFGYLMLTTRTPPLIIVGRIDEGVSHLILLSVP 255 NLVIFFV VVA VF GVPIAF FGLA +GYL LTT TP +++VGR+DEG+SHLILLSVP Sbjct: 207 NLVIFFVGVVACCVFAGVPIAFGFGLAIYGYLALTTSTPVMVLVGRMDEGMSHLILLSVP 266 Query: 256 LFVFLGQLIEMTGMARAMVAFLASLLGHVRGGLLYVLVGAMYLVSGISGSKAADMAAVAP 315 LFVFLG LIEMTGMARAMVAFLASLLGHVRGGL YVLVGAMYLVSGISGSKAADMAAVAP Sbjct: 267 LFVFLGLLIEMTGMARAMVAFLASLLGHVRGGLHYVLVGAMYLVSGISGSKAADMAAVAP 326 Query: 316 VLFPEMKRRGAKEGDLVALLAATGAQTETIPPSIVLITIGSVTGVSIAALFTGGLLPGVI 375 VLFPEMK RGAK GDLVALLAATGAQTETIPPS+VLITIGSVTGVSIAALFTGGLLPGV+ Sbjct: 327 VLFPEMKERGAKPGDLVALLAATGAQTETIPPSLVLITIGSVTGVSIAALFTGGLLPGVV 386 Query: 376 LAITLCCVIAWRYRNEDRSLARXVFGRRAGNRIAV 410 LAITL ++ WRYR+ED S R G + G + + Sbjct: 387 LAITLSMLVWWRYRDEDLSHIRRASGAQIGKTLII 421 >ref|YP_001240067.1| TRAP-type C4-dicarboxylate transporter small and large permease [Bradyrhizobium sp. BTAi1] gb|ABQ36161.1| putative TRAP-type C4-dicarboxylate transport system, fusion of small and large permease proteins (dctQ/dctM domains) [Bradyrhizobium sp. BTAi1] Length = 628 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 273/397 (68%), Positives = 324/397 (81%) Query: 14 DGVDRLIGRLLEVCVSILLAAEILLLFAGVLARYVFLKPIIWSDELASMLFLWLVMLGSA 73 D ++ +G L+E+ ++L+ AEI++LFAGV+ARYV KP+IWSDELAS+LFLWL MLG+A Sbjct: 26 DTLEAGLGLLVEIPAALLVVAEIVILFAGVVARYVLHKPLIWSDELASILFLWLAMLGAA 85 Query: 74 IALRRGEHMRMTALFAFVSPRMRAQLDTIALAASLGLVVLLFPAALEYAIEEAIVRTPAM 133 +A RRGEHMRMTAL A SP +RA LD +A AA+L +V++ + EYA EE+ + TPA+ Sbjct: 86 VAFRRGEHMRMTALVARASPGLRAFLDLVATAAALSFLVMIAWPSWEYAYEESYITTPAL 145 Query: 134 DLSNAWRATAAPVGFGLMGIFALLRLVRLADTRLIFSSLGTVAFIVGLFWLLQPLFAPLG 193 ++N WRA A PVG GLM +FAL+RL R A R + ++ ++A IV LFW+ QP+ PLG Sbjct: 146 QIANIWRAAALPVGIGLMALFALIRLARAARPRTMLLAVFSIAAIVALFWVAQPVLKPLG 205 Query: 194 NINLVIFFVVVVASAVFTGVPIAFSFGLATFGYLMLTTRTPPLIIVGRIDEGVSHLILLS 253 N+NLVIFFV VV VF GVPIAF+FGLA FGYL LTTRTP +++VGR+DEG+SHLILLS Sbjct: 206 NLNLVIFFVGVVGFCVFAGVPIAFAFGLAIFGYLALTTRTPLMVLVGRMDEGMSHLILLS 265 Query: 254 VPLFVFLGQLIEMTGMARAMVAFLASLLGHVRGGLLYVLVGAMYLVSGISGSKAADMAAV 313 VPLFVFLG LIEMTGMARAMVAFLASLLGHVRGGL YVLVGAMYLVSGISG+KAADMAAV Sbjct: 266 VPLFVFLGLLIEMTGMARAMVAFLASLLGHVRGGLHYVLVGAMYLVSGISGAKAADMAAV 325 Query: 314 APVLFPEMKRRGAKEGDLVALLAATGAQTETIPPSIVLITIGSVTGVSIAALFTGGLLPG 373 APVLFPEMK RGA+ GDLVALLAATGAQTETIPPS+VLITIGSVTGVSIAALFTGGLLPG Sbjct: 326 APVLFPEMKARGARPGDLVALLAATGAQTETIPPSLVLITIGSVTGVSIAALFTGGLLPG 385 Query: 374 VILAITLCCVIAWRYRNEDRSLARXVFGRRAGNRIAV 410 V+LA+TLC ++ WRYR+ED S R G G V Sbjct: 386 VVLAVTLCALVWWRYRHEDMSGVRRATGAEIGKAFIV 422 >ref|YP_569851.1| TRAP C4-dicarboxylate transport system permease DctM [Rhodopseudomonas palustris BisB5] gb|ABE39950.1| TRAP C4-dicarboxylate transport system permease DctM subunit [Rhodopseudomonas palustris BisB5] Length = 627 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 273/379 (72%), Positives = 316/379 (83%) Query: 16 VDRLIGRLLEVCVSILLAAEILLLFAGVLARYVFLKPIIWSDELASMLFLWLVMLGSAIA 75 ++ +G L+E+ ++L+ AEI++LFAGV++RYVF P+IWSDELAS+LFLWL M G+A+A Sbjct: 27 LESTLGLLVEIPAAMLVVAEIVVLFAGVVSRYVFHSPLIWSDELASILFLWLAMFGAAVA 86 Query: 76 LRRGEHMRMTALFAFVSPRMRAQLDTIALAASLGLVVLLFPAALEYAIEEAIVRTPAMDL 135 RRGEHMRMTAL A SPRMRA LD +A+ A+L ++L+ A EYA EE+ + TPA+ L Sbjct: 87 FRRGEHMRMTALVASASPRMRAFLDLVAICAALAFLLLIAAPAAEYAYEESYITTPALSL 146 Query: 136 SNAWRATAAPVGFGLMGIFALLRLVRLADTRLIFSSLGTVAFIVGLFWLLQPLFAPLGNI 195 SN WRA A PVG LM +FALLRLVR D RL+ + TVA ++GLFWL QPL PLGNI Sbjct: 147 SNIWRAAALPVGTALMAMFALLRLVRFGDWRLVVGAALTVAVLIGLFWLAQPLLKPLGNI 206 Query: 196 NLVIFFVVVVASAVFTGVPIAFSFGLATFGYLMLTTRTPPLIIVGRIDEGVSHLILLSVP 255 NL+IFFV V VF GVPIAF FGL+ +GYL LTTRTP +++VGR+DEG+SHLILLSVP Sbjct: 207 NLLIFFVGVAGLCVFAGVPIAFGFGLSIYGYLALTTRTPLMVLVGRMDEGMSHLILLSVP 266 Query: 256 LFVFLGQLIEMTGMARAMVAFLASLLGHVRGGLLYVLVGAMYLVSGISGSKAADMAAVAP 315 LFVFLG LIEMTGMARAMVAFLASLLGHVRGGL YVLVGAMYLVSGISGSKAADMAAVAP Sbjct: 267 LFVFLGLLIEMTGMARAMVAFLASLLGHVRGGLHYVLVGAMYLVSGISGSKAADMAAVAP 326 Query: 316 VLFPEMKRRGAKEGDLVALLAATGAQTETIPPSIVLITIGSVTGVSIAALFTGGLLPGVI 375 VLFPEMK RGAK GDLVALLAATGAQTETIPPS+VLITIGSVTGVSI+ALFTGGLLPGV+ Sbjct: 327 VLFPEMKERGAKPGDLVALLAATGAQTETIPPSLVLITIGSVTGVSISALFTGGLLPGVV 386 Query: 376 LAITLCCVIAWRYRNEDRS 394 LAITL ++ WRYR ED S Sbjct: 387 LAITLSMLVWWRYRGEDLS 405