BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0030.p (475 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001566656.1| RuBisCO-like protein [Delftia acidovorans SP... 597 e-168 ref|YP_001267182.1| RuBisCO-like protein [Pseudomonas putida F1]... 580 e-163 ref|YP_001811918.1| RuBisCO-like protein [Burkholderia ambifaria... 573 e-161 ref|YP_004643168.1| Ribulose-bisphosphate carboxylase [Paenibaci... 459 e-127 ref|ZP_01229072.1| ribulose-1,5-bisphosphate carboxylase/oxygena... 456 e-126 >ref|YP_001566656.1| RuBisCO-like protein [Delftia acidovorans SPH-1] gb|ABX38271.1| Ribulose-bisphosphate carboxylase [Delftia acidovorans SPH-1] Length = 424 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 282/421 (66%), Positives = 340/421 (80%) Query: 51 MRSDSPRSEFTARYLVETGDSVARAAEVIAGEQSSGTFLALPGETDELKRRSRARVISVT 110 M + +PR EFTARY VE+ + + A+VI+GEQSSGTFL+LPGETDELK RSRAR+ S+ Sbjct: 1 MNNIAPRKEFTARYFVESSVASEKIAQVISGEQSSGTFLSLPGETDELKERSRARIASIK 60 Query: 111 ELPPVDSPTLRSSFFEKKDRPNAFHRGEIEIAFPVDNVGCNIPTLLATVAGNLFELGETT 170 L P PTL S++ + FHR EIEIAFPV NVG N+ ++L T+AGNL+ELGE T Sbjct: 61 PLAPGLQPTLPSAYVGRHPHGGVFHRAEIEIAFPVANVGANLSSMLVTIAGNLYELGEVT 120 Query: 171 GLRLLDIEMPVSYAAGFPGPKFGVEGTRRLAGVIDRPLIGTILKPSIGMSASETAVLVDK 230 GLRLLD+++ YAA F GP FG+ GTRRLAGV RPLIGTI+KPSIG++ ++TA LVD Sbjct: 121 GLRLLDLDLAPEYAAQFAGPAFGIPGTRRLAGVHGRPLIGTIIKPSIGLTPAQTAELVDS 180 Query: 231 LCEAGIDFLKDDELIADPPYAPFEERLKAVFPVIEKHADRLGRKPMYAINISGSIDDMRR 290 LC AGIDF+KDDELIADPPYAPF+ERL+AV PV+++HADRLGR PMYAINISGS+D+M R Sbjct: 181 LCAAGIDFIKDDELIADPPYAPFDERLRAVMPVLQRHADRLGRMPMYAINISGSVDEMLR 240 Query: 291 RHDLVLEAGGTCVMVSVNWCGFSAIEHLRTYTNLPIHGHRNGWGLFTRHPWLGFDFAAFQ 350 RHD VL AGG+CVMVS+NW GFSA+EHLR ++ LPIHGHRNGWG FTRH LGF F A+Q Sbjct: 241 RHDAVLAAGGSCVMVSINWVGFSAVEHLRRHSQLPIHGHRNGWGAFTRHGGLGFSFQAYQ 300 Query: 351 KLWRLTGVDHLHVNGLRSKFWEPDDSVVASARSCLAAFSGVKAMMPVFSSGQWAGQAGDT 410 KLWRL GVDHLH NG+RSKFWEPDDSV+ASA++CLA ++G++ +MPVFSSGQWAG A D Sbjct: 301 KLWRLAGVDHLHCNGIRSKFWEPDDSVIASAKACLAPWAGLQPLMPVFSSGQWAGLAPDL 360 Query: 411 FERLGSIDLMHLAGGGIMGHPGGIADGVMSLREAWEAAVQGVPVTEYAKSHRPLQLAISK 470 + LG++DLMHLAGGGI+GHP GIA GV S+RE WEAAV GV + YA +H LQ A+ Sbjct: 361 YGALGAVDLMHLAGGGIIGHPDGIAAGVASMREGWEAAVAGVSLEHYADAHPALQRALVH 420 Query: 471 F 471 F Sbjct: 421 F 421 >ref|YP_001267182.1| RuBisCO-like protein [Pseudomonas putida F1] gb|ABQ77998.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Pseudomonas putida F1] Length = 425 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 267/417 (64%), Positives = 331/417 (79%) Query: 57 RSEFTARYLVETGDSVARAAEVIAGEQSSGTFLALPGETDELKRRSRARVISVTELPPVD 116 R EFTAR+ VE+ + R +EVIAGEQSSGTFL+LPGE+ ELK RSRARV+++ LP V Sbjct: 8 REEFTARFFVESSYPIERVSEVIAGEQSSGTFLSLPGESAELKERSRARVVAIEPLPSVS 67 Query: 117 SPTLRSSFFEKKDRPNAFHRGEIEIAFPVDNVGCNIPTLLATVAGNLFELGETTGLRLLD 176 SP+L S + + + +HRGE+ IAFP N+G NIP LL T+AGNLFE+GE +GLR+LD Sbjct: 68 SPSLHSDYLARHNPSETYHRGEVTIAFPTANIGTNIPALLTTIAGNLFEIGEVSGLRVLD 127 Query: 177 IEMPVSYAAGFPGPKFGVEGTRRLAGVIDRPLIGTILKPSIGMSASETAVLVDKLCEAGI 236 +E+P +A+GF GP+FG+EGTR LAGV DRP+IGTI+KPSIG++ +TA +VD+LC GI Sbjct: 128 LELPERFASGFIGPQFGIEGTRALAGVHDRPIIGTIVKPSIGLTPEQTASVVDELCAGGI 187 Query: 237 DFLKDDELIADPPYAPFEERLKAVFPVIEKHADRLGRKPMYAINISGSIDDMRRRHDLVL 296 DF+KDDEL+ DP YA F+ RL AV PV+ KHADRLGR PMYAINISGSID+M RR D VL Sbjct: 188 DFIKDDELLIDPTYASFDARLGAVMPVLHKHADRLGRMPMYAINISGSIDEMMRRQDAVL 247 Query: 297 EAGGTCVMVSVNWCGFSAIEHLRTYTNLPIHGHRNGWGLFTRHPWLGFDFAAFQKLWRLT 356 EAGGTCVM+ +NW G SA+EH+R + LPIHGHRNGWG TR+P LGF F +QK+WRL Sbjct: 248 EAGGTCVMLCLNWVGHSAVEHIRKHAQLPIHGHRNGWGALTRYPQLGFSFEVYQKIWRLA 307 Query: 357 GVDHLHVNGLRSKFWEPDDSVVASARSCLAAFSGVKAMMPVFSSGQWAGQAGDTFERLGS 416 G+DHLHVNG++ KF+E DDSV++SA+SCLA F+G++ +MPVFSSGQWAGQA + F RL S Sbjct: 308 GIDHLHVNGIQGKFYEADDSVISSAKSCLAPFAGMRPLMPVFSSGQWAGQAPELFNRLQS 367 Query: 417 IDLMHLAGGGIMGHPGGIADGVMSLREAWEAAVQGVPVTEYAKSHRPLQLAISKFGG 473 +DLMHLAGGGI+GHP GI GV S+RE WEAAVQ VP+ YA+ L A+ KFGG Sbjct: 368 VDLMHLAGGGIIGHPMGIEAGVQSMREGWEAAVQHVPLERYAEGRPALSAALQKFGG 424 >ref|YP_001811918.1| RuBisCO-like protein [Burkholderia ambifaria MC40-6] gb|ACB67702.1| Ribulose-bisphosphate carboxylase [Burkholderia ambifaria MC40-6] Length = 425 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 279/418 (66%), Positives = 338/418 (80%) Query: 57 RSEFTARYLVETGDSVARAAEVIAGEQSSGTFLALPGETDELKRRSRARVISVTELPPVD 116 RSEFTARY VE+ +A+AAEVIAGEQSSGTFLALPGETD LK R+RARV+ V PV Sbjct: 8 RSEFTARYFVESSVPIAKAAEVIAGEQSSGTFLALPGETDALKNRARARVVKVDSHSPVL 67 Query: 117 SPTLRSSFFEKKDRPNAFHRGEIEIAFPVDNVGCNIPTLLATVAGNLFELGETTGLRLLD 176 P+L S+ E+K P+ + RGEIEIAFPVDN+G N+PTLL+TVAGNLFELGE TGLRLLD Sbjct: 68 EPSLYSAHVERKGSPSVYFRGEIEIAFPVDNIGPNLPTLLSTVAGNLFELGEVTGLRLLD 127 Query: 177 IEMPVSYAAGFPGPKFGVEGTRRLAGVIDRPLIGTILKPSIGMSASETAVLVDKLCEAGI 236 I++P +YAA FPGP+FG+ GTR A V DRP+IGTI+KPSIG+ ++TA +VD LC A I Sbjct: 128 IDLPATYAAQFPGPQFGISGTRDFAKVYDRPMIGTIIKPSIGLLPAQTAEIVDSLCAADI 187 Query: 237 DFLKDDELIADPPYAPFEERLKAVFPVIEKHADRLGRKPMYAINISGSIDDMRRRHDLVL 296 DF+KDDEL+ADP YA F+ERL AV PV+ +HADR+GR PMYAINISG+ID+M +RHD V+ Sbjct: 188 DFIKDDELLADPTYASFDERLAAVMPVLHRHADRMGRMPMYAINISGTIDEMLQRHDAVV 247 Query: 297 EAGGTCVMVSVNWCGFSAIEHLRTYTNLPIHGHRNGWGLFTRHPWLGFDFAAFQKLWRLT 356 AGGTCVM+ +NW GF+ +EHLR + LPIHGHRNGWG TR+P LGF F A+QKLWRL Sbjct: 248 RAGGTCVMICINWVGFAGVEHLRKHAQLPIHGHRNGWGALTRYPQLGFSFKAYQKLWRLA 307 Query: 357 GVDHLHVNGLRSKFWEPDDSVVASARSCLAAFSGVKAMMPVFSSGQWAGQAGDTFERLGS 416 GVD LHVNG+RSKFWEPD SV+ SAR+CL F+GV+ +MPVFSSGQWA QA D + +LGS Sbjct: 308 GVDQLHVNGIRSKFWEPDASVIESARACLTPFAGVQPLMPVFSSGQWASQAPDLYAQLGS 367 Query: 417 IDLMHLAGGGIMGHPGGIADGVMSLREAWEAAVQGVPVTEYAKSHRPLQLAISKFGGA 474 +DLMHLAGGGI+GHP GIA GV S+RE WEAAV+G+ + +A+S L+ A+S F A Sbjct: 368 VDLMHLAGGGIIGHPHGIAAGVASMREGWEAAVEGIDLNTFAESRPALRAALSHFQSA 425 >ref|YP_004643168.1| Ribulose-bisphosphate carboxylase [Paenibacillus mucilaginosus KNP414] gb|AEI43298.1| Ribulose-bisphosphate carboxylase [Paenibacillus mucilaginosus KNP414] Length = 424 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 228/412 (55%), Positives = 298/412 (72%), Gaps = 1/412 (0%) Query: 61 TARYLVETGDSVARAAEVIAGEQSSGTFLALPGETDELKRRSRARVISVTELPPVDSPTL 120 TA YLVET ++ RAAEVIAGEQS+GTF A+PGET LK R A ++SV L D+P+L Sbjct: 7 TAVYLVETPYTLERAAEVIAGEQSTGTFTAVPGETASLKERHGAAIVSVEALEETDTPSL 66 Query: 121 RSSFFEKKDRPNAFHRGEIEIAFPVDNVGCNIPTLLATVAGNLFELGETTGLRLLDIEMP 180 + + + RG I++++P+ N G ++P L++ VAGNLFEL E +GLRL+D+E+P Sbjct: 67 PGTKV-PRGHDGKYRRGLIKVSYPLLNFGPSLPNLMSAVAGNLFELQELSGLRLVDLELP 125 Query: 181 VSYAAGFPGPKFGVEGTRRLAGVIDRPLIGTILKPSIGMSASETAVLVDKLCEAGIDFLK 240 ++AA +PGPKFGVEGTRRL GV RP+IGTI+KPS+G+S + LV ++ AG+DF+K Sbjct: 126 EAFAAAYPGPKFGVEGTRRLTGVYGRPVIGTIVKPSVGLSMEQLGSLVREMALAGVDFIK 185 Query: 241 DDELIADPPYAPFEERLKAVFPVIEKHADRLGRKPMYAINISGSIDDMRRRHDLVLEAGG 300 DDEL A+PPYAP ++++KAV +E+ AD GR+ MYA NI+G ID++RR HDLV+EAGG Sbjct: 186 DDELNANPPYAPLKDKVKAVMAEVERAADETGRRVMYAFNITGDIDELRRNHDLVVEAGG 245 Query: 301 TCVMVSVNWCGFSAIEHLRTYTNLPIHGHRNGWGLFTRHPWLGFDFAAFQKLWRLTGVDH 360 CVMVS+N G + + L Y+ +PIH HRNGWG+ TR P LG +F +QKL RL G DH Sbjct: 246 NCVMVSINSIGVAGLSWLNRYSQVPIHAHRNGWGMMTRSPLLGMEFTVYQKLCRLAGADH 305 Query: 361 LHVNGLRSKFWEPDDSVVASARSCLAAFSGVKAMMPVFSSGQWAGQAGDTFERLGSIDLM 420 LHVNGL SKF+E D+SVV S R+C G MPV SSGQWAG AG T+E+ G+ DLM Sbjct: 306 LHVNGLGSKFYESDESVVRSIRACRQPLFGGYGTMPVVSSGQWAGTAGITYEQAGTTDLM 365 Query: 421 HLAGGGIMGHPGGIADGVMSLREAWEAAVQGVPVTEYAKSHRPLQLAISKFG 472 HLAGGGI+ HP G A GV S+++ WEAAV+ V EYA +H L+ AI +FG Sbjct: 366 HLAGGGILAHPDGPAAGVESMKQGWEAAVKAVAAEEYAVTHGALRRAIERFG 417 >ref|ZP_01229072.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Aurantimonas manganoxydans SI85-9A1] gb|EAS48331.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Aurantimonas manganoxydans SI85-9A1] Length = 413 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 229/414 (55%), Positives = 297/414 (71%), Gaps = 8/414 (1%) Query: 60 FTARYLVETGDSVARAAEVIAGEQSSGTFLALPGETDELKRRSRARVISVTELPPVDSPT 119 A Y++ T R A++IAGEQSSGTF+A+PGE++ELK RS A V + E+ P Sbjct: 5 IVAEYILRTAGDPHRVADIIAGEQSSGTFIAIPGESEELKARSAATVDRLEEIEDSGLPM 64 Query: 120 LRSSFFEKKDRPNAFHRGEIEIAFPVDNVGCNIPTLLATVAGNLFELGETTGLRLLDIEM 179 L + E P ++ + +++P+ NVG ++P LLAT+AGNLFEL E GL+L+D+ + Sbjct: 65 LPGAIGEA---PRSYR---MTLSWPLANVGPSLPNLLATLAGNLFELREVAGLKLVDLRL 118 Query: 180 PVSYAAGFPGPKFGVEGTRRLAGVIDRPLIGTILKPSIGMSASETAVLVDKLCEAGIDFL 239 P ++A +PGP FGVEGTR+L GV+DRP+IGTI+KPSIG++ +ETA LVD+LC+ GIDF+ Sbjct: 119 PPAFADRYPGPAFGVEGTRQLTGVVDRPVIGTIIKPSIGLNPAETAALVDQLCDGGIDFI 178 Query: 240 KDDELIADPPYAPFEERLKAVFPVIEKHADRLGRKPMYAINISGSIDDMRRRHDLVLEAG 299 KDDEL AD PFEERL AV VI +HA+R GRK MYA+N++G ID+M RRHD V AG Sbjct: 179 KDDELQADGAICPFEERLAAVTTVIARHAERTGRKVMYAVNLTGEIDEMLRRHDQVEAAG 238 Query: 300 GTCVMVSVNWCGFSAIEHLRTYTNLPIHGHRNGWGLFTRHPWLGFDFAAFQKLWRLTGVD 359 GTCVMVS+N G + + LR + LPIH HRNGWG R P G+ + A+QK+WRL GVD Sbjct: 239 GTCVMVSLNSVGLTGLTALRRHARLPIHAHRNGWGYLGRSPDNGWSYVAWQKIWRLAGVD 298 Query: 360 HLHVNGLRSKFWEPDDSVVASARSCLAAFSGVK--AMMPVFSSGQWAGQAGDTFERLGSI 417 H+HVNGL +KFWEPDDSVVASA++CL S + +MPVFSSGQ QA T+ LGS Sbjct: 299 HMHVNGLANKFWEPDDSVVASAKACLTPLSPARPDVVMPVFSSGQSVKQAEGTWRHLGSP 358 Query: 418 DLMHLAGGGIMGHPGGIADGVMSLREAWEAAVQGVPVTEYAKSHRPLQLAISKF 471 DL++ AGGGI+ HP GIA GV SLREAW+AA+QGVP+ E A + L +A+ F Sbjct: 359 DLIYCAGGGIVAHPSGIAAGVRSLREAWDAAMQGVPLQEAAAASPDLAVAVKTF 412