BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0029.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002537054.1| HTH-type transcriptional regulator trpI, put... 364 7e-99 ref|YP_001417820.1| LysR family transcriptional regulator [Xanth... 348 8e-94 ref|YP_001811917.1| LysR family transcriptional regulator [Burkh... 326 4e-87 ref|YP_001566655.1| LysR family transcriptional regulator [Delft... 311 1e-82 ref|YP_002498649.1| LysR family transcriptional regulator [Methy... 290 2e-76 >ref|XP_002537054.1| HTH-type transcriptional regulator trpI, putative [Ricinus communis] gb|EEF25329.1| HTH-type transcriptional regulator trpI, putative [Ricinus communis] Length = 294 Score = 364 bits (935), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 176/291 (60%), Positives = 223/291 (76%), Gaps = 3/291 (1%) Query: 1 MARPKPSLNALRAFEATARLRSMTAASLELSVTHGAISRHIRSLEELLGVPLLVRTSSST 60 M+ P PSLNAL+AFEATAR RSMT A+ EL VTHGAISRHIR LEE LGV L+ R + ST Sbjct: 1 MSGPLPSLNALKAFEATARHRSMTLAADELCVTHGAISRHIRGLEETLGVILVTRRAHST 60 Query: 61 DPTPEGSRLAEGLTAAFNLIDGSVEQILPGPLTVSCSATIMMYWLIPRLAGFHEAHRNID 120 +PTPEGSRLAEGL +AF L+ SVE++ P PLT+SCS++IMM W+IPR+ FHE H +I Sbjct: 61 EPTPEGSRLAEGLASAFGLMQASVERVRPSPLTLSCSSSIMMGWIIPRIGQFHERHPHIA 120 Query: 121 LQFNMNYDQVDFIRDKVSVAIRSSTITPPKDVVIKELAREWISPVCATSYAKANRLRRPS 180 LQFNMNYDQ+DF+RDK+S+AIRSS I PPKD +I+EL E I PVC+ Y + + RP Sbjct: 121 LQFNMNYDQIDFVRDKISLAIRSSVIDPPKDAIIRELGGEAIGPVCSPEYLNRSGISRPD 180 Query: 181 DIADCRLLGTRTRPEAWSDWLDELGLRQDVRI--QESYEHFYLLIQAALCGLGLALVPTM 238 D+ +L T+TRP+AWSDW G + D+R+ Q +++HFYLLIQAA CGLG+A+VP M Sbjct: 181 DMEHAAILSTQTRPQAWSDWQAIAG-QADLRLTPQAAFDHFYLLIQAAACGLGMAVVPQM 239 Query: 239 FVLEEINSGRLVAPFGSIPGKRMLMLWTAPHVASRPESRAVSNWLTREMSA 289 VL+++ SGRLVAPFG +P R ++LW APH+A RP++ A+ WLT EM A Sbjct: 240 LVLDQLASGRLVAPFGFLPSPRRMVLWIAPHIAGRPDALALERWLTAEMHA 290 >ref|YP_001417820.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS68163.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 308 Score = 348 bits (892), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 166/286 (58%), Positives = 209/286 (73%), Gaps = 1/286 (0%) Query: 3 RPKPSLNALRAFEATARLRSMTAASLELSVTHGAISRHIRSLEELLGVPLLVRTSSSTDP 62 +P PSL ALRAFEATAR RSMT A+ EL VTHGA+SRHI++LE LGVPL+ R +++P Sbjct: 7 QPLPSLVALRAFEATARHRSMTRAAEELCVTHGAVSRHIKALEATLGVPLVARGGGASEP 66 Query: 63 TPEGSRLAEGLTAAFNLIDGSVEQILPGPLTVSCSATIMMYWLIPRLAGFHEAHRNIDLQ 122 TPEG RLAEGL+ AF LI +++++ PGPLT+SCSA+IM+ WLIPR+AGFH + ++ ++ Sbjct: 67 TPEGQRLAEGLSTAFGLIHATLDRLRPGPLTLSCSASIMLCWLIPRMAGFHRRNPDVQVE 126 Query: 123 FNMNYDQVDFIRDKVSVAIRSSTITPPKDVVIKELAREWISPVCATSYAKANRLRRPSDI 182 NMNYD+VDF RD +SVAIRSSTI PP+D +I+EL EWI PVC+ Y L P D+ Sbjct: 127 LNMNYDKVDFSRDNISVAIRSSTIVPPRDAIIRELGTEWIGPVCSPDYLAGRDLAAPEDL 186 Query: 183 ADCRLLGTRTRPEAWSDWLDELGLRQ-DVRIQESYEHFYLLIQAALCGLGLALVPTMFVL 241 LL T TRPEAW DW G ++ Q S+EHFYLLIQAA CGLG+A+VP M L Sbjct: 187 GSAHLLSTNTRPEAWRDWAQATGNGDLGLKAQRSFEHFYLLIQAAACGLGVAVVPHMLAL 246 Query: 242 EEINSGRLVAPFGSIPGKRMLMLWTAPHVASRPESRAVSNWLTREM 287 E+ SGRLVAPFG +PG R L +W AP VA R + +A+ +WL EM Sbjct: 247 SELQSGRLVAPFGFVPGGRHLRMWIAPQVAFRSDLKALESWLLGEM 292 >ref|YP_001811917.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gb|ACB67701.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 316 Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 159/286 (55%), Positives = 206/286 (72%), Gaps = 2/286 (0%) Query: 4 PKPSLNALRAFEATARLRSMTAASLELSVTHGAISRHIRSLEELLGVPLLVRTSSSTDPT 63 P+ SLNALRAFEATARLRS AA+ EL+VTHGA+SRHIR+LE+ LGV LL R + ST+PT Sbjct: 26 PRLSLNALRAFEATARLRSFGAAAEELNVTHGAVSRHIRALEDQLGVLLLSRNAHSTEPT 85 Query: 64 PEGSRLAEGLTAAFNLIDGSVEQILPGPLTVSCSATIMMYWLIPRLAGFHEAHRNIDLQF 123 PEG+++AEGL+ AFNLI +V+Q+ PGPLT+SCSA+IMMYWL+PRL+ A ++DL F Sbjct: 86 PEGAQMAEGLSVAFNLIQKTVDQLKPGPLTLSCSASIMMYWLLPRLSKLKNAIPSLDLSF 145 Query: 124 NMNYDQVDFIRDKVSVAIRSSTITPPKDVVIKELAREWISPVCATSYAKANRLRRPSDIA 183 N + ++DF RDK++VAIR S+I PK V L EWI VC+ Y + NR+ +P D+A Sbjct: 146 NTGHGEIDFTRDKITVAIRLSSIPVPKGVTPVPLIEEWIGAVCSPEYMRTNRIEKPGDLA 205 Query: 184 DCRLLGTRTRPEAWSDWLDELG--LRQDVRIQESYEHFYLLIQAALCGLGLALVPTMFVL 241 RLL T TRP AW+DW L I ES++HFYL IQAA CGLG+A VP M V Sbjct: 206 RARLLATNTRPSAWADWYKATSTVLEPPPDIAESFDHFYLQIQAAKCGLGVAAVPRMLVR 265 Query: 242 EEINSGRLVAPFGSIPGKRMLMLWTAPHVASRPESRAVSNWLTREM 287 +E++S LVAPFG +PG L+LW APH ++P++ A+ WL E+ Sbjct: 266 DELDSAGLVAPFGFVPGPVHLVLWVAPHAENQPKTVALVEWLRNEL 311 >ref|YP_001566655.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX38270.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 294 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 158/292 (54%), Positives = 208/292 (71%), Gaps = 2/292 (0%) Query: 1 MARP-KPSLNALRAFEATARLRSMTAASLELSVTHGAISRHIRSLEELLGVPLLVRTSSS 59 MA P + SLN LRAFEATARLRS +AA+ ELSVTHGA+SRHIR+LE+ LG+ LL RT+ Sbjct: 1 MATPHRLSLNGLRAFEATARLRSFSAAAEELSVTHGAVSRHIRTLEDSLGLALLQRTAQG 60 Query: 60 TDPTPEGSRLAEGLTAAFNLIDGSVEQILPGPLTVSCSATIMMYWLIPRLAGFHEAHRNI 119 PT EG RLAEGL+ AF LI SVEQ+ PGPLT++CS +IMMYWLIPRL F E + + Sbjct: 61 ATPTNEGLRLAEGLSTAFGLIQSSVEQLKPGPLTLACSESIMMYWLIPRLNRFKEINPEV 120 Query: 120 DLQFNMNYDQVDFIRDKVSVAIRSSTITPPKDVVIKELAREWISPVCATSYAKANRLRRP 179 +L+FNM++ +DF DKVSVAIR S+I PPK+ V ++A EWI PVC+ Y + +R+ Sbjct: 121 ELRFNMSHGPIDFAHDKVSVAIRLSSIDPPKEAVRADVAHEWIGPVCSPGYLQNHRIESF 180 Query: 180 SDIADCRLLGTRTRPEAWSDWLDELG-LRQDVRIQESYEHFYLLIQAALCGLGLALVPTM 238 D+A RL+ + TRP AW+DW G + ++R+ ES+ HFYLLIQ A CGLG+A VP M Sbjct: 181 EDLARARLMISLTRPTAWADWASCSGQMSPELRVDESFAHFYLLIQGARCGLGMANVPHM 240 Query: 239 FVLEEINSGRLVAPFGSIPGKRMLMLWTAPHVASRPESRAVSNWLTREMSAT 290 V +++ S LVAP G + G L +WTAPH++ RP+ + +WL E+ A+ Sbjct: 241 LVRDDLMSWTLVAPMGFVCGPNRLAIWTAPHLSRRPDVVKLVDWLHDELRAS 292 >ref|YP_002498649.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gb|ACL58346.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 294 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/285 (52%), Positives = 189/285 (66%), Gaps = 1/285 (0%) Query: 8 LNALRAFEATARLRSMTAASLELSVTHGAISRHIRSLEELLGVPLLVRTSSSTDPTPEGS 67 LNALRAFE TARL SM+AA+ EL VTHGA+SRHI++LE G+PLL R + T EG+ Sbjct: 8 LNALRAFEVTARLGSMSAAATELGVTHGAVSRHIKALEVQFGLPLLERLPRAVALTQEGA 67 Query: 68 RLAEGLTAAFNLIDGSVEQILPGPLTVSCSATIMMYWLIPRLAGFHEAHRNIDLQFNMNY 127 +LA L AF+ I +V ++ PGPLT+SCSATIMMYWLIPRL F + + NI+L+ N+++ Sbjct: 68 QLAASLGEAFDQIHLAVSRVQPGPLTLSCSATIMMYWLIPRLETFKQNNPNIELRLNISF 127 Query: 128 DQVDFIRDKVSVAIRSSTITPPKDVVIKELAREWISPVCATSYAKANRLRRPSDIADCRL 187 +VDFIRD++SVAIR+S PP K L E I PVC YA L P D+A R+ Sbjct: 128 GEVDFIRDEISVAIRNSMYRPPATARAKRLIIEEIGPVCHPDYASRLGLESPDDLARARI 187 Query: 188 LGTRTRPEAWSDWLDELGLRQ-DVRIQESYEHFYLLIQAALCGLGLALVPTMFVLEEINS 246 L T TRP AW +W + +G R V ESY HFYL+IQAA CGLGLAL P + V EI + Sbjct: 188 LATATRPNAWIEWAEAIGRRNLGVVPHESYGHFYLVIQAAACGLGLALAPRLLVESEIRA 247 Query: 247 GRLVAPFGSIPGKRMLMLWTAPHVASRPESRAVSNWLTREMSATA 291 G LVAPFG PG L LW A H+ SR + + + WL EM +A Sbjct: 248 GHLVAPFGFTPGPHRLELWIAEHLQSRTDLKCLVGWLENEMKRSA 292