BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0013.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628867.1| leucine-, isoleucine-, valine-, threonine-, a... 637 e-180 ref|YP_002825149.1| putative ABC branched-chain amino transporte... 576 e-162 gb|AEJ26831.1| Leucine- isoleucine- valine- threonine- and alani... 555 e-156 ref|YP_298088.1| ureA/short-chain amide ABC transporter [Ralston... 509 e-142 ref|YP_583792.1| ABC transporter periplasmic protein [Cupriavidu... 508 e-142 >ref|ZP_08628867.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08226.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Bradyrhizobiaceae bacterium SG-6C] Length = 398 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 299/399 (74%), Positives = 347/399 (86%), Gaps = 2/399 (0%) Query: 10 IAAAATVAFASHVAAQPAAVSDDAVKIGVLTDMSGQFSHESGEGSVTAVKMAVEDFGGKV 69 +A AA+VA A AQ +SDD V+IGV+TDMSGQFSHESGEGSVTAVKMAVEDFGG V Sbjct: 1 MALAASVALAGSAFAQDK-ISDDVVRIGVMTDMSGQFSHESGEGSVTAVKMAVEDFGGTV 59 Query: 70 LGKPIEVLVADHQNKPDTASGLARKWFDVDHVDMVANLINSSIALTVSQLAQQKNRIAII 129 LGK IEV+VADHQN+ + A AR+W+DV VDM+ANLINSSIAL V+ +AQ+KNRIAI+ Sbjct: 60 LGKKIEVIVADHQNRNEVAIAKAREWYDVGKVDMIANLINSSIALAVTNVAQEKNRIAIV 119 Query: 130 NGSGSSRLTNDACTPNSVHYAYDTYALARGTGSALMKAGQKSWYFLTADYAFGHALEGDT 189 NGSGSSRLT D+CTPNS+HYAYDTYALA+GTG AL+K G SWYFLTADYAFGHALEGDT Sbjct: 120 NGSGSSRLTGDSCTPNSIHYAYDTYALAQGTGKALIKEGLNSWYFLTADYAFGHALEGDT 179 Query: 190 TAVVKSLGGEVIGSTRYPIEAFDQSSFLLQAQSSKAQVIGLAGSGNVLVNSIKSAQEFGI 249 VVK+ GG V+GS RYPI+ D SSFLLQAQ+SKA+V+ +AGSG +N++KSA++FG+ Sbjct: 180 ANVVKANGGNVLGSIRYPIDTPDHSSFLLQAQASKAKVVAVAGSGTTFINAVKSAKDFGL 239 Query: 250 TKGG-QTLAGLLVWITDIKSLGLRTAQGLVLTNAFYWDRDDETRAWSKRFYERMKRMPHM 308 T GG QT+AGLLVWITDI S+GL+TAQGLVLTN FYWDRD+ETRA+SKRF+ +MKRMPHM Sbjct: 240 TDGGKQTIAGLLVWITDIDSMGLKTAQGLVLTNGFYWDRDEETRAFSKRFFAKMKRMPHM 299 Query: 309 GDAGDYSSTMHYLKAIEAAGTDEAKAVMSKMREMPINDFFAKNGRIREDGRMVHDMYVYE 368 GDAGDYSSTMHYL AI+AAGTD+AK VM+KMREMP+NDFFAKNGR+REDGR VHDMYVYE Sbjct: 300 GDAGDYSSTMHYLNAIKAAGTDDAKTVMAKMREMPVNDFFAKNGRVREDGRFVHDMYVYE 359 Query: 369 VKQPSESKGEWDFYKLREVIPGEQAFRPLKDSLCPLVKK 407 VK+PSESK WD+YKLR VIPG +AFRPL +S CPLVKK Sbjct: 360 VKKPSESKYAWDYYKLRAVIPGNEAFRPLSESKCPLVKK 398 >ref|YP_002825149.1| putative ABC branched-chain amino transporter, periplasmic binding protein [Sinorhizobium fredii NGR234] gb|ACP24396.1| putative ABC branched-chain amino transporter, periplasmic binding protein [Sinorhizobium fredii NGR234] Length = 402 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 270/400 (67%), Positives = 321/400 (80%), Gaps = 4/400 (1%) Query: 8 ILIAAAATVAFASHVAAQPAAVSDDAVKIGVLTDMSGQFSHESGEGSVTAVKMAVEDFGG 67 +L AA A AQ AA V+IGVLTD+SGQFSHE+GEGS+TAVKMAVEDFGG Sbjct: 7 LLSCVAAVGAMTMSAGAQDAA----PVRIGVLTDVSGQFSHEAGEGSITAVKMAVEDFGG 62 Query: 68 KVLGKPIEVLVADHQNKPDTASGLARKWFDVDHVDMVANLINSSIALTVSQLAQQKNRIA 127 KVL +P+EV+VADHQNKP+ A AR+W++ V M+ NLINS IAL V+Q+A+ ++RIA Sbjct: 63 KVLDRPLEVVVADHQNKPEVAVSTAREWYESQGVTMINNLINSGIALAVTQVAKDEDRIA 122 Query: 128 IINGSGSSRLTNDACTPNSVHYAYDTYALARGTGSALMKAGQKSWYFLTADYAFGHALEG 187 I+NGSGSSRLTND CTPNS+HY+YDTYALA GT + L+ G K+W+FLTADYAFGHALE Sbjct: 123 IVNGSGSSRLTNDGCTPNSIHYSYDTYALANGTANQLILQGMKNWFFLTADYAFGHALEA 182 Query: 188 DTTAVVKSLGGEVIGSTRYPIEAFDQSSFLLQAQSSKAQVIGLAGSGNVLVNSIKSAQEF 247 D T +VK GEV GS RYPIE D S+F+LQAQ+S AQV+ +AGSG +N++KSA EF Sbjct: 183 DATQIVKDNDGEVSGSVRYPIETSDHSAFMLQAQASPAQVVAMAGSGTTFINAVKSAAEF 242 Query: 248 GITKGGQTLAGLLVWITDIKSLGLRTAQGLVLTNAFYWDRDDETRAWSKRFYERMKRMPH 307 G+ G+T+AGLLVW TD+ SLGL TAQG++LTNAFYWDRDD TRA+SKRF ER+ R PH Sbjct: 243 GLAASGKTVAGLLVWDTDVHSLGLETAQGMILTNAFYWDRDDATRAFSKRFEERVGRPPH 302 Query: 308 MGDAGDYSSTMHYLKAIEAAGTDEAKAVMSKMREMPINDFFAKNGRIREDGRMVHDMYVY 367 MGDAGDYSSTMHYLKA+EAAGT +A+ VM+KMRE PINDFFAKNG+IREDGRMVHDMYVY Sbjct: 303 MGDAGDYSSTMHYLKAVEAAGTTDAQKVMAKMRETPINDFFAKNGKIREDGRMVHDMYVY 362 Query: 368 EVKQPSESKGEWDFYKLREVIPGEQAFRPLKDSLCPLVKK 407 +VK P+ES GEWD KL I G+ AFRPL +S CPLVK Sbjct: 363 QVKTPAESTGEWDILKLVTTISGDDAFRPLSESQCPLVKN 402 >gb|AEJ26831.1| Leucine- isoleucine- valine- threonine- and alanine-binding protein [Paracoccus denitrificans SD1] Length = 408 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 257/382 (67%), Positives = 308/382 (80%) Query: 26 PAAVSDDAVKIGVLTDMSGQFSHESGEGSVTAVKMAVEDFGGKVLGKPIEVLVADHQNKP 85 PA D V+IGVLTDMSGQFSHE+GEGSV AVKMAVEDFGG+VLG+ IEVLV+DHQNKP Sbjct: 26 PALAKDGPVRIGVLTDMSGQFSHEAGEGSVAAVKMAVEDFGGEVLGRKIEVLVSDHQNKP 85 Query: 86 DTASGLARKWFDVDHVDMVANLINSSIALTVSQLAQQKNRIAIINGSGSSRLTNDACTPN 145 + A A++W++ V ++ NLINS IAL V+ +A + + IAI+NGSGSS+LT + CTP+ Sbjct: 86 ELAVSTAQEWYESGGVSLITNLINSGIALAVAGVAAEHDGIAIVNGSGSSKLTGEGCTPH 145 Query: 146 SVHYAYDTYALARGTGSALMKAGQKSWYFLTADYAFGHALEGDTTAVVKSLGGEVIGSTR 205 S+HYAYDTYALA GT L G K+W+FLTADYAFGHALE D +AVVKSLGG V GS R Sbjct: 146 SIHYAYDTYALAVGTARELANQGHKNWFFLTADYAFGHALEADASAVVKSLGGTVEGSIR 205 Query: 206 YPIEAFDQSSFLLQAQSSKAQVIGLAGSGNVLVNSIKSAQEFGITKGGQTLAGLLVWITD 265 YPIE D SSF+LQA +S A V+ +AGSG +N++KSA EFG+ G+T+AGLLVW+TD Sbjct: 206 YPIETTDHSSFMLQAMASPADVVAIAGSGTTFINAVKSAGEFGVASSGKTVAGLLVWLTD 265 Query: 266 IKSLGLRTAQGLVLTNAFYWDRDDETRAWSKRFYERMKRMPHMGDAGDYSSTMHYLKAIE 325 SLGL+ A+G++LTNAFYWDRDDETRA+S RF ER+ R PHMGDAGDYSSTMHYLKA+E Sbjct: 266 THSLGLQAAEGMILTNAFYWDRDDETRAFSARFAERVGRPPHMGDAGDYSSTMHYLKAVE 325 Query: 326 AAGTDEAKAVMSKMREMPINDFFAKNGRIREDGRMVHDMYVYEVKQPSESKGEWDFYKLR 385 AAG+ +A AVM+KMRE P+NDFFAK G IREDGRMVHDMYVY+VK P ES EWD YKL Sbjct: 326 AAGSTDADAVMAKMRETPVNDFFAKGGVIREDGRMVHDMYVYQVKSPEESTSEWDVYKLV 385 Query: 386 EVIPGEQAFRPLKDSLCPLVKK 407 IPG++A+RPL +S C LVKK Sbjct: 386 NTIPGDEAYRPLSESTCRLVKK 407 >ref|YP_298088.1| ureA/short-chain amide ABC transporter [Ralstonia eutropha JMP134] gb|AAZ63244.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Ralstonia eutropha JMP134] Length = 413 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 235/385 (61%), Positives = 303/385 (78%), Gaps = 2/385 (0%) Query: 25 QPAA-VSDDAVKIGVLTDMSGQFSHESGEGSVTAVKMAVEDFGGKVLGKPIEVLVADHQN 83 QPAA +SDD VKIG+L DMSG ++ +G GS TA +MA++DFGGKVLGK IE++V DHQN Sbjct: 29 QPAAGISDDMVKIGMLLDMSGLYADVTGRGSATAAQMAIDDFGGKVLGKKIELVVVDHQN 88 Query: 84 KPDTASGLARKWFDVDHVDMVANLINSSIALTVSQLAQQKNRIAIINGSGSSRLTNDACT 143 K D A+ AR+WFD HVD + ++ S+ AL V +A+QKN I + +G GS R+TND CT Sbjct: 89 KADIAANKAREWFDTGHVDAILDVAASAPALAVLDVAKQKNHIVVFSGPGSERITNDLCT 148 Query: 144 PNSVHYAYDTYALARGTGSALMKAGQKSWYFLTADYAFGHALEGDTTAVVKSLGGEVIGS 203 P SVHYAYDTYALA T A+++ G K+W+FLTADYAFGH L+ TAV+ GG+V+G+ Sbjct: 149 PVSVHYAYDTYALANTTARAMVQRGGKTWFFLTADYAFGHTLQDSATAVINEAGGKVLGA 208 Query: 204 TRYPIEAFDQSSFLLQAQSSKAQVIGLAGSGNVLVNSIKSAQEFGITK-GGQTLAGLLVW 262 R+PI A D +S+LLQAQ+SKAQV+GLA +G VN+IK+A EFG+T+ G Q +AGLL++ Sbjct: 209 ARHPIGASDFASYLLQAQASKAQVVGLANAGGDTVNAIKAASEFGLTRNGAQRMAGLLLY 268 Query: 263 ITDIKSLGLRTAQGLVLTNAFYWDRDDETRAWSKRFYERMKRMPHMGDAGDYSSTMHYLK 322 I DI ++GL+TA GLVLT AFYWD +D TRAWS+R++E++K+MP+M AG YSS MHYLK Sbjct: 269 INDIHAIGLKTASGLVLTEAFYWDMNDATRAWSRRYFEKVKKMPNMSQAGAYSSVMHYLK 328 Query: 323 AIEAAGTDEAKAVMSKMREMPINDFFAKNGRIREDGRMVHDMYVYEVKQPSESKGEWDFY 382 A++AAGTDE AVM KM+ MPINDFFAKNGRIREDGRM+HDMY++EVK P+ESK WD+Y Sbjct: 329 AVQAAGTDETAAVMKKMKSMPINDFFAKNGRIREDGRMIHDMYLFEVKSPAESKYPWDYY 388 Query: 383 KLREVIPGEQAFRPLKDSLCPLVKK 407 K+ +PG+QAF P S CPL+K+ Sbjct: 389 KVLATVPGDQAFMPASKSQCPLLKR 413 >ref|YP_583792.1| ABC transporter periplasmic protein [Cupriavidus metallidurans CH34] gb|ABF08523.1| ABC-type transporter, periplasmic component; possible urea/short-chain amide ABC transporter precursor up with Au [Cupriavidus metallidurans CH34] Length = 412 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 237/391 (60%), Positives = 303/391 (77%), Gaps = 2/391 (0%) Query: 19 ASHVAAQP-AAVSDDAVKIGVLTDMSGQFSHESGEGSVTAVKMAVEDFGGKVLGKPIEVL 77 A+HV AQP +SDD VKIG+L DMSG +S +G GS A +MA++DFGGKVLGK IE++ Sbjct: 22 AAHVHAQPKPGISDDIVKIGLLLDMSGLYSDVTGRGSAAAAQMAIDDFGGKVLGKKIELV 81 Query: 78 VADHQNKPDTASGLARKWFDVDHVDMVANLINSSIALTVSQLAQQKNRIAIINGSGSSRL 137 V DHQNK D A+ AR+WFD DHVD + ++ S+ AL V +A+QKN+I + +G G+ R+ Sbjct: 82 VVDHQNKADIAANKAREWFDQDHVDAILDVAASAPALAVLDVAKQKNKIVVFSGPGTERI 141 Query: 138 TNDACTPNSVHYAYDTYALARGTGSALMKAGQKSWYFLTADYAFGHALEGDTTAVVKSLG 197 TND CTP SVHYAYDTYALA T A+++ G K+W+FLTADYAFGH L+ TAVV G Sbjct: 142 TNDLCTPVSVHYAYDTYALANTTARAMVERGGKTWFFLTADYAFGHTLQQSATAVVNEAG 201 Query: 198 GEVIGSTRYPIEAFDQSSFLLQAQSSKAQVIGLAGSGNVLVNSIKSAQEFGITK-GGQTL 256 G V+G+ R+P+ D +S+LLQAQ+SKAQV+GLA +G VN+IK+A EFG+T+ G Q L Sbjct: 202 GRVLGAARHPLNTSDFASYLLQAQASKAQVVGLANAGGDTVNAIKAASEFGLTRNGNQKL 261 Query: 257 AGLLVWITDIKSLGLRTAQGLVLTNAFYWDRDDETRAWSKRFYERMKRMPHMGDAGDYSS 316 AGLL++I DI ++GL+TAQGLVLT AFYWD +D TRAWS+R++E++K+MP+M AG YSS Sbjct: 262 AGLLLYINDIHAIGLKTAQGLVLTEAFYWDMNDATRAWSRRYFEKVKKMPNMSQAGVYSS 321 Query: 317 TMHYLKAIEAAGTDEAKAVMSKMREMPINDFFAKNGRIREDGRMVHDMYVYEVKQPSESK 376 HYLKA++A GTDE AVM +M+ PINDFFAKNGRIREDGRMVHDMY++EVK+P ESK Sbjct: 322 VSHYLKAVQATGTDETAAVMKQMKATPINDFFAKNGRIREDGRMVHDMYLFEVKKPEESK 381 Query: 377 GEWDFYKLREVIPGEQAFRPLKDSLCPLVKK 407 WD+YKL +PG+QAF P S CPL+KK Sbjct: 382 YPWDYYKLLATVPGDQAFIPPSKSQCPLLKK 412