BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0008.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628875.1| beta-lactamase-like protein [Bradyrhizobiacea... 328 4e-88 ref|NP_660009.1| beta-lactamase like protein [Rhizobium etli CFN... 290 1e-76 ref|YP_002825141.1| putative beta-lactamase-like protein [Sinorh... 288 5e-76 gb|AEJ26983.1| Putative beta-lactamase [Paracoccus denitrificans... 254 8e-66 ref|ZP_03524531.1| probable beta-lactamase like protein [Rhizobi... 196 2e-48 >ref|ZP_08628875.1| beta-lactamase-like protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08234.1| beta-lactamase-like protein [Bradyrhizobiaceae bacterium SG-6C] Length = 251 Score = 328 bits (842), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 155/253 (61%), Positives = 199/253 (78%), Gaps = 2/253 (0%) Query: 1 MKLNFLPAGRLRMKKSIYVSGADRSETIDLPVSSALIRHKQGNVLFDTGCHPSVVDHAEA 60 MK++ L GRLRM++SIY A R ETI+LPVS L+RHKQGNVLFDTGCHPS+ ++ EA Sbjct: 1 MKMHVLSGGRLRMRRSIYFPDAGRDETIELPVSCMLMRHKQGNVLFDTGCHPSIAENPEA 60 Query: 61 RWGTLAKVMKPLMGANETLLPSLACVGMEPGDIDIVVNSHFHPDHCGCNQFFRKATILAH 120 RWG++AK M P+M + +L L VG+ P DID+VV SH H DHCGCN+FFRK+TI+ H Sbjct: 61 RWGSVAKYMTPIMPPGDNVLTGLTAVGLGPDDIDVVVCSHLHTDHCGCNEFFRKSTIVVH 120 Query: 121 AKEIEAAQAPGAEAAGYLRADWDYGQPIEALNGERDLFDDGSVVLVPLPGHTPGTLGALV 180 A+E+ AA+A +AAGY ADWD+ P++ ++G+ DLF DG++VLVPLPGHTPGT+GALV Sbjct: 121 ARELAAARA--PDAAGYFAADWDHPIPMKTIDGQFDLFGDGTIVLVPLPGHTPGTVGALV 178 Query: 181 GLDRDGQFLLASDSVSLRQNLDADTAPRNTWNVDEQLKTFAEVRRIERAGATVICGHDDQ 240 LDR G+FLL SD+VS+R+NLD + P+NT N +E LK+F E+RRIE+AGATVIC HD+ Sbjct: 179 KLDRSGEFLLTSDAVSIRENLDKNIVPKNTKNAEEFLKSFEEIRRIEKAGATVICSHDEA 238 Query: 241 QWKSLRKGSEGYE 253 QW SLRKG + YE Sbjct: 239 QWTSLRKGMDAYE 251 >ref|NP_660009.1| beta-lactamase like protein [Rhizobium etli CFN 42] ref|YP_001984317.1| probable beta-lactamase like protein [Rhizobium etli CIAT 652] gb|AAM55022.1| probable beta-lactamase like protein [Rhizobium etli CFN 42] gb|ACE93767.1| probable beta-lactamase like protein [Rhizobium etli CIAT 652] gb|EGE58680.1| beta-lactamase like protein [Rhizobium etli CNPAF512] Length = 253 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 131/253 (51%), Positives = 175/253 (69%) Query: 1 MKLNFLPAGRLRMKKSIYVSGADRSETIDLPVSSALIRHKQGNVLFDTGCHPSVVDHAEA 60 MK++FL AGRLRM++SIYV GA + E I+LPV + L+RH QGN LFD+GC+P A Sbjct: 1 MKMHFLEAGRLRMRRSIYVPGALKEEAIELPVHATLMRHPQGNALFDSGCNPEAAIDPGA 60 Query: 61 RWGTLAKVMKPLMGANETLLPSLACVGMEPGDIDIVVNSHFHPDHCGCNQFFRKATILAH 120 RWG L+KVM P+ T++ L + ++P DID+V+ SH HPDHCGCN +FR+ATIL H Sbjct: 61 RWGGLSKVMTPIFSPERTVVHQLKTLALDPEDIDVVICSHLHPDHCGCNAYFRRATILCH 120 Query: 121 AKEIEAAQAPGAEAAGYLRADWDYGQPIEALNGERDLFDDGSVVLVPLPGHTPGTLGALV 180 E +AA A GAE GYLR +WD Q + N E D+F DG +VL+P+PGHTPG A V Sbjct: 121 EAEAQAATASGAENQGYLRGEWDQPQGFQTFNAEHDVFGDGRIVLLPMPGHTPGMTVARV 180 Query: 181 GLDRDGQFLLASDSVSLRQNLDADTAPRNTWNVDEQLKTFAEVRRIERAGATVICGHDDQ 240 L++DG F+LASD+ L+ ++D APRNTWN++ + A ++ + GA++I GHDD Sbjct: 181 ELEKDGSFILASDAAPLQASVDTGIAPRNTWNIELAAEALARLKALRERGASIIFGHDDA 240 Query: 241 QWKSLRKGSEGYE 253 QW+ LRKG E YE Sbjct: 241 QWQELRKGVEFYE 253 >ref|YP_002825141.1| putative beta-lactamase-like protein [Sinorhizobium fredii NGR234] gb|ACP24388.1| putative beta-lactamase-like protein [Sinorhizobium fredii NGR234] Length = 253 Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 132/253 (52%), Positives = 175/253 (69%) Query: 1 MKLNFLPAGRLRMKKSIYVSGADRSETIDLPVSSALIRHKQGNVLFDTGCHPSVVDHAEA 60 MK++FL GRLRM++S++V G + ETI+LPV + LIRH+QGNVLFDTGC+P EA Sbjct: 1 MKMHFLAGGRLRMRRSVFVPGVGKEETIELPVHATLIRHRQGNVLFDTGCNPEAATDPEA 60 Query: 61 RWGTLAKVMKPLMGANETLLPSLACVGMEPGDIDIVVNSHFHPDHCGCNQFFRKATILAH 120 RWG LAKVM P+ +T++ LA +G+E GDID+V+ SH HPDHCGCNQ+F +ATIL H Sbjct: 61 RWGGLAKVMTPIFDPEQTVVRQLAALGLEAGDIDVVICSHLHPDHCGCNQYFGRATILCH 120 Query: 121 AKEIEAAQAPGAEAAGYLRADWDYGQPIEALNGERDLFDDGSVVLVPLPGHTPGTLGALV 180 E+ AA+ AE GYL+ +WD Q + E D+F DG +VL+P+PGHTPG A V Sbjct: 121 EAEVAAAKTDAAENQGYLKPEWDQPQGFQTFGAEHDVFGDGHIVLLPMPGHTPGMTVAHV 180 Query: 181 GLDRDGQFLLASDSVSLRQNLDADTAPRNTWNVDEQLKTFAEVRRIERAGATVICGHDDQ 240 L G F+LASD+ L+ N+DA APRNTWN++ A ++ GAT++ GHD+ Sbjct: 181 SLRDSGTFVLASDAAPLQANIDAGVAPRNTWNMELAAAALARLKAFRDKGATIVSGHDEA 240 Query: 241 QWKSLRKGSEGYE 253 QW++LRKG E YE Sbjct: 241 QWQALRKGGEFYE 253 >gb|AEJ26983.1| Putative beta-lactamase [Paracoccus denitrificans SD1] Length = 253 Score = 254 bits (649), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 125/252 (49%), Positives = 173/252 (68%) Query: 1 MKLNFLPAGRLRMKKSIYVSGADRSETIDLPVSSALIRHKQGNVLFDTGCHPSVVDHAEA 60 M+++ L GRL+M+KSIY+ + + ++LPV S L+RH GNVLFDTGC P + Sbjct: 1 MRMDVLSGGRLKMRKSIYMPAESKEDMVELPVVSVLLRHPSGNVLFDTGCAPQAAEDPSG 60 Query: 61 RWGTLAKVMKPLMGANETLLPSLACVGMEPGDIDIVVNSHFHPDHCGCNQFFRKATILAH 120 RWG LAKVM+P+ + ++ L G+ DID+V+ SH HPDHCGCN F +AT++AH Sbjct: 61 RWGGLAKVMQPIFAPQDAVVNQLPRHGLAAEDIDVVICSHLHPDHCGCNAAFARATVIAH 120 Query: 121 AKEIEAAQAPGAEAAGYLRADWDYGQPIEALNGERDLFDDGSVVLVPLPGHTPGTLGALV 180 A E+ AA+A GAE GYL +WD Q ++GERDLFDDG +VL+PLPGH+PG G + Sbjct: 121 AAELAAARAEGAEKQGYLPQEWDIPQGYSEIDGERDLFDDGRIVLLPLPGHSPGLTGTRI 180 Query: 181 GLDRDGQFLLASDSVSLRQNLDADTAPRNTWNVDEQLKTFAEVRRIERAGATVICGHDDQ 240 LDRDG FLLASD+ + ++D AP+N+W++D +K+ AE++ + GATVICGHDD Sbjct: 181 ELDRDGAFLLASDAAPMMCHVDQGYAPKNSWDMDLAVKSLAEIKAQKDRGATVICGHDDA 240 Query: 241 QWKSLRKGSEGY 252 QW+ L + EG+ Sbjct: 241 QWQELSQREEGF 252 >ref|ZP_03524531.1| probable beta-lactamase like protein [Rhizobium etli GR56] Length = 167 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 87/166 (52%), Positives = 116/166 (69%) Query: 88 MEPGDIDIVVNSHFHPDHCGCNQFFRKATILAHAKEIEAAQAPGAEAAGYLRADWDYGQP 147 ++P DID+V+ SH HPDHCGCN +FR+ATIL H E +AA A GAE GYLR +WD Q Sbjct: 2 LDPEDIDVVICSHLHPDHCGCNAYFRRATILCHEAEAQAATASGAENQGYLRGEWDQPQG 61 Query: 148 IEALNGERDLFDDGSVVLVPLPGHTPGTLGALVGLDRDGQFLLASDSVSLRQNLDADTAP 207 + N E D+F DG +VL+P+PGHTPG A V L++DG F+LASD+ L+ ++D AP Sbjct: 62 FQTFNAEHDVFGDGRIVLLPMPGHTPGMTVARVELEKDGSFILASDAAPLQASVDTGIAP 121 Query: 208 RNTWNVDEQLKTFAEVRRIERAGATVICGHDDQQWKSLRKGSEGYE 253 RNTWN++ + A ++ + GA++I GHDD QW+ LRKG E YE Sbjct: 122 RNTWNIELAAEALARLKALRERGASIIFGHDDAQWQELRKGVEFYE 167