BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0007.p (160 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004173204.1| carbon monoxide dehydrogenase small chain [A... 213 1e-53 gb|AEJ26984.1| Carbon monoxide dehydrogenase small chain [Paraco... 205 2e-51 ref|YP_002825142.1| carbon monoxide dehydrogenase small chain [S... 205 2e-51 ref|ZP_06849988.1| aerobic-type carbon monoxide dehydrogenase sm... 199 2e-49 ref|YP_002524058.1| carbon monoxide dehydrogenase small chain (C... 198 2e-49 >ref|YP_004173204.1| carbon monoxide dehydrogenase small chain [Anaerolinea thermophila UNI-1] dbj|BAJ62604.1| carbon monoxide dehydrogenase small chain [Anaerolinea thermophila UNI-1] Length = 159 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 97/155 (62%), Positives = 123/155 (79%), Gaps = 1/155 (0%) Query: 2 SATVSVTVNGTKYDVQDVEPRMLLSDFLRDTLGLTGTHVGCEHGVCGACTVLVNGDSIRS 61 + T+ V VNG +Y V++VEPR+LLSDFLR LGLTGTHVGCEHG+CGACT+L +G+ +RS Sbjct: 3 THTIKVKVNGVEY-VREVEPRLLLSDFLRHDLGLTGTHVGCEHGICGACTILFDGEPMRS 61 Query: 62 CLMLAVQANGAEITTVEGLGTPETLNVLQAQFREHHGLQCGFCTPGMLMTGEDLLRKYPL 121 CL+ AVQANG E+TTVE LGTPE ++ LQ F+E H LQCG+CTPG LMT + L +P Sbjct: 62 CLIFAVQANGHEVTTVEALGTPEKMHPLQEAFQEKHALQCGYCTPGFLMTLKPFLETHPN 121 Query: 122 ATDDEIREGLSGNLCRCTGYQNIVAAIRAAAGKRA 156 TD+EIRE + GNLCRCTGY++I+ A++ AA K A Sbjct: 122 PTDEEIREAIDGNLCRCTGYEHIIEAVKLAAQKMA 156 >gb|AEJ26984.1| Carbon monoxide dehydrogenase small chain [Paracoccus denitrificans SD1] Length = 161 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 97/151 (64%), Positives = 120/151 (79%), Gaps = 1/151 (0%) Query: 5 VSVTVNGTKYDVQDVEPRMLLSDFLRDTLGLTGTHVGCEHGVCGACTVLVNGDSIRSCLM 64 ++VTVNG + Q VEPR+LLSDFLR LGLTGTHVGCEHGVCGACT+ +NG S RSCL Sbjct: 8 ITVTVNGINHTRQ-VEPRLLLSDFLRHELGLTGTHVGCEHGVCGACTISLNGRSARSCLT 66 Query: 65 LAVQANGAEITTVEGLGTPETLNVLQAQFREHHGLQCGFCTPGMLMTGEDLLRKYPLATD 124 LAV A+G E+ T+E GTP+ L+ +Q F++HHGLQCGFCTPGM+M DLL +PL TD Sbjct: 67 LAVMADGQEVETIEAQGTPDNLSRIQRAFQDHHGLQCGFCTPGMVMAIADLLAHHPLETD 126 Query: 125 DEIREGLSGNLCRCTGYQNIVAAIRAAAGKR 155 ++IREGLSGN+CRCTGY +I+ A+R A +R Sbjct: 127 EQIREGLSGNICRCTGYVHIIEAVRELARER 157 >ref|YP_002825142.1| carbon monoxide dehydrogenase small chain [Sinorhizobium fredii NGR234] gb|ACP24389.1| carbon monoxide dehydrogenase small chain [Sinorhizobium fredii NGR234] Length = 161 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 98/152 (64%), Positives = 119/152 (78%), Gaps = 1/152 (0%) Query: 4 TVSVTVNGTKYDVQDVEPRMLLSDFLRDTLGLTGTHVGCEHGVCGACTVLVNGDSIRSCL 63 T+SV+VNG + VEPRMLLSDFLR LGLTGTHVGCEHGVCGACTV+++G S RSCL Sbjct: 7 TLSVSVNGVAHTA-TVEPRMLLSDFLRHELGLTGTHVGCEHGVCGACTVILDGRSARSCL 65 Query: 64 MLAVQANGAEITTVEGLGTPETLNVLQAQFREHHGLQCGFCTPGMLMTGEDLLRKYPLAT 123 LAVQA G EI TVEG G+ + L +Q FR+HH LQCGFCTPG +M D+LR +PL + Sbjct: 66 TLAVQAEGVEIETVEGQGSVDRLGRIQEAFRQHHALQCGFCTPGFIMAITDMLRHHPLES 125 Query: 124 DDEIREGLSGNLCRCTGYQNIVAAIRAAAGKR 155 D++IRE LSGN+CRCTGY++IV A+R A +R Sbjct: 126 DEQIREALSGNICRCTGYEHIVNAVRELARER 157 >ref|ZP_06849988.1| aerobic-type carbon monoxide dehydrogenase small subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gb|EFG76652.1| aerobic-type carbon monoxide dehydrogenase small subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 161 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/149 (65%), Positives = 118/149 (79%), Gaps = 2/149 (1%) Query: 5 VSVTVNGTKYDVQDVEPRMLLSDFLRDTLGLTGTHVGCEHGVCGACTVLVNGDSIRSCLM 64 + ++VNGT VEPRM L+DFLRDT GLTGTH+GCEHG CGACTVL++G+++RSCLM Sbjct: 6 IELSVNGTPV-AAGVEPRMTLADFLRDTCGLTGTHLGCEHGACGACTVLLDGEAVRSCLM 64 Query: 65 LAVQANGAEITTVEGLGTPE-TLNVLQAQFREHHGLQCGFCTPGMLMTGEDLLRKYPLAT 123 AVQA+G E+TTVEG+ P+ TL+ +Q+ RE HGLQCGFCTPG +M+ LLR P + Sbjct: 65 FAVQADGTEVTTVEGIAAPDGTLSPVQSALRECHGLQCGFCTPGFVMSLTALLRDNPDPS 124 Query: 124 DDEIREGLSGNLCRCTGYQNIVAAIRAAA 152 D+EIREGLSGN CRCTGYQ IVAA R AA Sbjct: 125 DEEIREGLSGNFCRCTGYQGIVAAARRAA 153 >ref|YP_002524058.1| carbon monoxide dehydrogenase small chain (COdehydrogenase subunit S) (CO-DH S) [Thermomicrobium roseum DSM 5159] gb|ACM06593.1| carbon monoxide dehydrogenase small chain (COdehydrogenase subunit S) (CO-DH S) [Thermomicrobium roseum DSM 5159] Length = 161 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 93/148 (62%), Positives = 118/148 (79%), Gaps = 1/148 (0%) Query: 5 VSVTVNGTKYDVQDVEPRMLLSDFLRDTLGLTGTHVGCEHGVCGACTVLVNGDSIRSCLM 64 +++TVNG +VE RM L+DFLR+ LGLTGT +GCEHGVCG+CTVL +G ++RSCL+ Sbjct: 6 ITLTVNGRSISA-EVEARMTLADFLREQLGLTGTKLGCEHGVCGSCTVLWDGAAVRSCLV 64 Query: 65 LAVQANGAEITTVEGLGTPETLNVLQAQFREHHGLQCGFCTPGMLMTGEDLLRKYPLATD 124 LA QA+GA +TT+EGL T E ++ +Q F EHHGLQCGFCTPGM++T LL + P ++ Sbjct: 65 LAAQADGANLTTIEGLATGEAMHPVQQAFWEHHGLQCGFCTPGMVLTAVALLEENPAPSE 124 Query: 125 DEIREGLSGNLCRCTGYQNIVAAIRAAA 152 +EIRE LSGNLCRCTGYQNIV A+RAAA Sbjct: 125 EEIREALSGNLCRCTGYQNIVRAVRAAA 152