BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0006.p (215 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628864.1| carbon monoxide dehydrogenase medium chain [B... 201 7e-50 gb|EGE58682.1| putative carbon-monoxide dehydrogenase protein [R... 189 2e-46 ref|YP_002825143.1| carbon monoxide dehydrogenase medium chain [... 182 4e-44 ref|ZP_03516786.1| probable carbon-monoxide dehydrogenase protei... 181 7e-44 gb|AEJ26985.1| Carbon monoxide dehydrogenase medium chain [Parac... 177 6e-43 >ref|ZP_08628864.1| carbon monoxide dehydrogenase medium chain [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08223.1| carbon monoxide dehydrogenase medium chain [Bradyrhizobiaceae bacterium SG-6C] Length = 291 Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 96/217 (44%), Positives = 140/217 (64%), Gaps = 5/217 (2%) Query: 1 LTRHREIEQSPLIASKLPVMAAAMRHVAHLAIRNRGTIGGSLSHADPAAELPMLSLFYGA 60 L RHR LIA+++PV+ AM+HVAHL +RNRGT GS+ HADPAAE+PM++L Sbjct: 75 LVRHRMTAADRLIATQIPVLHHAMKHVAHLTVRNRGTFCGSVCHADPAAEMPMMTLLLNG 134 Query: 61 SLLVQGPSGRRIIAAEDFFVDALTNCLKPEEIVVEID---FPILQQNGWAFEEVARRFGD 117 ++ + P G R++AAEDFF+ +L CL+P+E+V EI+ FP + GW FEE ARR GD Sbjct: 135 AIQISSPRGTRVVAAEDFFLSSLMTCLEPDEVVTEIEIDTFP--AETGWGFEEFARRHGD 192 Query: 118 FALASIAVSVRRGASTIEDARVAVMGVADTPLRLKEVEGQLRGIAIDDQMPDRFSELVTS 177 +ALA++AV++ R + R+A+MGV + P+R+ +E + G + D + + Sbjct: 193 YALAAVAVTMTRRDGVVSAPRIALMGVGEMPMRMSALETMIEGRELTDDLIGEAVAALRD 252 Query: 178 SVSANGDLHASAEYRQHLLGQLARRAMQTALASEGDR 214 ++ N DLH SA+YR+HL G L RRA+ A + G R Sbjct: 253 EITPNSDLHGSADYRRHLAGALTRRALSAAWSRAGVR 289 >gb|EGE58682.1| putative carbon-monoxide dehydrogenase protein [Rhizobium etli CNPAF512] Length = 215 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 134/206 (65%), Gaps = 1/206 (0%) Query: 11 PLIASKLPVMAAAMRHVAHLAIRNRGTIGGSLSHADPAAELPMLSLFYGASLLVQGPSGR 70 P+I LP++ AM HV H+ +RNRGT GGS++HADPA E+PM++ F G +++ GR Sbjct: 6 PIIRQHLPIVHEAMHHVTHMTVRNRGTFGGSVAHADPATEMPMMTRFLGGTVIASSQRGR 65 Query: 71 RIIAAEDFFVDALTNCLKPEEIVVEIDFPILQQN-GWAFEEVARRFGDFALASIAVSVRR 129 R I A DFFV +L N L+P+E V+ ++ ++ + GW FEE A+R GDFALA A ++ Sbjct: 66 REIPAADFFVGSLVNSLEPDEFVIRVELDAMRPDAGWGFEEFAKRHGDFALACFATTLHC 125 Query: 130 GASTIEDARVAVMGVADTPLRLKEVEGQLRGIAIDDQMPDRFSELVTSSVSANGDLHASA 189 D RV +MGV +TPLRL+E+EG + G + + + D ++ + ++ N D+HASA Sbjct: 126 VDGRASDVRVGMMGVGETPLRLEEIEGIIEGTDVSEPVLDTVADRLAGILTPNTDIHASA 185 Query: 190 EYRQHLLGQLARRAMQTALASEGDRR 215 +YR+HL G LA+RA++ A + R Sbjct: 186 DYRRHLSGVLAKRALRAAWSRANHER 211 >ref|YP_002825143.1| carbon monoxide dehydrogenase medium chain [Sinorhizobium fredii NGR234] gb|ACP24390.1| carbon monoxide dehydrogenase medium chain [Sinorhizobium fredii NGR234] Length = 353 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 126/206 (61%), Gaps = 1/206 (0%) Query: 3 RHREIEQSPLIASKLPVMAAAMRHVAHLAIRNRGTIGGSLSHADPAAELPMLSLFYGASL 62 RHR L+ +P++ AM HVAHL +RNRGT GS+ HADPAAE+P+++L ++ Sbjct: 135 RHRMTATDALVHRHIPILHDAMHHVAHLTVRNRGTFCGSVCHADPAAEMPVMTLLLDGTI 194 Query: 63 LVQGPSGRRIIAAEDFFVDALTNCLKPEEIVVEIDFPILQ-QNGWAFEEVARRFGDFALA 121 G R IAA DFFV +L L+P+E V ID L + GW FEE +RR GDFALA Sbjct: 195 TALSIRGERQIAASDFFVGSLMTALEPDEFVTSIDIDTLPPETGWGFEEFSRRHGDFALA 254 Query: 122 SIAVSVRRGASTIEDARVAVMGVADTPLRLKEVEGQLRGIAIDDQMPDRFSELVTSSVSA 181 +A ++R D R +MGV +TPLRL ++E + G AI + + SE + + Sbjct: 255 CVATTLRIVDGVAGDVRFGMMGVGETPLRLPDIETLVEGQAISEMLLQDVSETLKGLLHP 314 Query: 182 NGDLHASAEYRQHLLGQLARRAMQTA 207 N D+HASA+YR HL G LARRA++ A Sbjct: 315 NTDIHASADYRLHLAGALARRALRDA 340 >ref|ZP_03516786.1| probable carbon-monoxide dehydrogenase protein [Rhizobium etli IE4771] Length = 319 Score = 181 bits (459), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 134/214 (62%), Gaps = 1/214 (0%) Query: 3 RHREIEQSPLIASKLPVMAAAMRHVAHLAIRNRGTIGGSLSHADPAAELPMLSLFYGASL 62 RH +I LP++ AM HVAH+ +RNRGT GS++HADPA E+PM++ F ++ Sbjct: 77 RHHTTATDAIIRQHLPIVHEAMHHVAHMTVRNRGTFCGSVAHADPATEMPMMTRFLDGTV 136 Query: 63 LVQGPSGRRIIAAEDFFVDALTNCLKPEEIVVEIDFPILQQN-GWAFEEVARRFGDFALA 121 + GRR I A +FFV +L N L+P+E V+ ++ ++ GW FEE A+R GDFALA Sbjct: 137 IAYSQRGRREIPAAEFFVGSLVNSLEPDEFVIRVELDAMRPGAGWGFEEFAKRHGDFALA 196 Query: 122 SIAVSVRRGASTIEDARVAVMGVADTPLRLKEVEGQLRGIAIDDQMPDRFSELVTSSVSA 181 A ++ D RV +MGV +TPLRL+E+EG + G + + + D ++ + ++ Sbjct: 197 CFATTLHCVDGMASDVRVGMMGVGETPLRLEEIEGIIEGTEVSEPVLDMVADRLAGILTP 256 Query: 182 NGDLHASAEYRQHLLGQLARRAMQTALASEGDRR 215 N D+HASA++R+HL G LA+RA++ A + R+ Sbjct: 257 NTDIHASADFRRHLSGVLAKRALRAAWSRAKPRK 290 >gb|AEJ26985.1| Carbon monoxide dehydrogenase medium chain [Paracoccus denitrificans SD1] Length = 301 Score = 177 bits (450), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 91/217 (41%), Positives = 136/217 (62%), Gaps = 2/217 (0%) Query: 1 LTRHREIEQSPLIASKLPVMAAAMRHVAHLAIRNRGTIGGSLSHADPAAELPMLSLFYGA 60 L RHR P I +LPV+ AM HVAH+ +RNRGT GS+ HADPAAE+PM++ + Sbjct: 75 LARHRMTASDPTIGRRLPVLHDAMHHVAHMTVRNRGTFCGSVCHADPAAEMPMIAQMFDG 134 Query: 61 SLLVQGPSGRRIIAAEDFFVDALTNCLKPEEIVVEIDFPILQQN-GWAFEEVARRFGDFA 119 + + SG R++ +F V +L N L+PEE+V I + GW FEE +RR GDFA Sbjct: 135 RVEIASASGVRVLPVSEFLVGSLVNALEPEEMVTGISIGTTSPDAGWGFEEFSRRHGDFA 194 Query: 120 LASIAVSVR-RGASTIEDARVAVMGVADTPLRLKEVEGQLRGIAIDDQMPDRFSELVTSS 178 LA++AV+ R I DAR+ + GV +T LR++++E + G +D+ + + ++ + Sbjct: 195 LAAVAVTFRVDDGEAIRDARIGMTGVGETALRMRDLEALVDGRRLDETLEAEVAAWLSDN 254 Query: 179 VSANGDLHASAEYRQHLLGQLARRAMQTALASEGDRR 215 +S N D+HASA+YR++L G LA RA++ A A +RR Sbjct: 255 LSPNADIHASADYRRNLSGVLAARALRKAHARALERR 291