BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0096.0024.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001240435.1| hypothetical protein BBta_4497 [Bradyrhizobi...   211   4e-53
ref|YP_001206098.1| hypothetical protein BRADO4121 [Bradyrhizobi...   209   1e-52
ref|YP_530000.1| hypothetical protein RPC_0102 [Rhodopseudomonas...   178   2e-43
ref|YP_782536.1| hypothetical protein RPE_3626 [Rhodopseudomonas...   170   8e-41
ref|ZP_08630637.1| hypothetical protein CSIRO_3747 [Bradyrhizobi...   149   2e-34

>ref|YP_001240435.1| hypothetical protein BBta_4497 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36529.1| hypothetical protein BBta_4497 [Bradyrhizobium sp. BTAi1]
          Length = 146

 Score =  211 bits (536), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 112/134 (83%)

Query: 1   MCDYSLHAVASRPAIVGETLITTTFRGTSTRGFASENDPTVAVCMLPGTELAFAENVRYD 60
           MCDYSLHAVASRPA VGETLI+TTFRGT+TRGFA E++P VAVCMLPGTELAFAE+VRYD
Sbjct: 1   MCDYSLHAVASRPAKVGETLISTTFRGTATRGFALESEPNVAVCMLPGTELAFAEDVRYD 60

Query: 61  SRWIWTKTLNYRVGVFNEVEPDVPDRHHDAVEFPDGSHVLVTQLVEGQRVSVLQLPALHP 120
           SRW+WT+T+  RV  FN +E  VPDRHHDAVEF DG HVLVTQL EGQRV+VLQLP   P
Sbjct: 61  SRWLWTRTIRERVAKFNTIEKHVPDRHHDAVEFADGRHVLVTQLCEGQRVTVLQLPVTKP 120

Query: 121 PVEQKPKVVERRPS 134
             +++P V E  P+
Sbjct: 121 SADRRPDVAEELPA 134


>ref|YP_001206098.1| hypothetical protein BRADO4121 [Bradyrhizobium sp. ORS 278]
 emb|CAL77873.1| hypothetical protein BRADO4121 [Bradyrhizobium sp. ORS 278]
          Length = 146

 Score =  209 bits (532), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/134 (71%), Positives = 113/134 (84%)

Query: 1   MCDYSLHAVASRPAIVGETLITTTFRGTSTRGFASENDPTVAVCMLPGTELAFAENVRYD 60
           MCDYSLHAVASRPA VGETLI+TTFRGT+TRGFA E++PTVAVCMLPGTELAFAE+VRYD
Sbjct: 1   MCDYSLHAVASRPAKVGETLISTTFRGTATRGFALESEPTVAVCMLPGTELAFAEDVRYD 60

Query: 61  SRWIWTKTLNYRVGVFNEVEPDVPDRHHDAVEFPDGSHVLVTQLVEGQRVSVLQLPALHP 120
           SRW+WT+T+  RV  FN +E  +PDRHHDA+EF DG HVLVTQL EGQRV+VLQLP    
Sbjct: 61  SRWLWTRTIRERVAKFNTIEKHIPDRHHDAIEFADGRHVLVTQLCEGQRVTVLQLPVSKQ 120

Query: 121 PVEQKPKVVERRPS 134
           P E++P++    P+
Sbjct: 121 PGERRPEIATETPA 134


>ref|YP_530000.1| hypothetical protein RPC_0102 [Rhodopseudomonas palustris BisB18]
 gb|ABD85681.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 142

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/116 (68%), Positives = 96/116 (82%)

Query: 1   MCDYSLHAVASRPAIVGETLITTTFRGTSTRGFASENDPTVAVCMLPGTELAFAENVRYD 60
           MCDYSLHAVA+RPA VGETLITTTFRGTSTRGFA+ ++P VAVC+LPGTEL+F + VRYD
Sbjct: 1   MCDYSLHAVATRPAKVGETLITTTFRGTSTRGFAAVDEPDVAVCLLPGTELSFQDEVRYD 60

Query: 61  SRWIWTKTLNYRVGVFNEVEPDVPDRHHDAVEFPDGSHVLVTQLVEGQRVSVLQLP 116
            RWIWT+   ++VG F +++   P  HHDA+EFPDGS+VLVT LV GQ  +VLQLP
Sbjct: 61  QRWIWTRASQFKVGKFGQIDKGTPATHHDAIEFPDGSNVLVTHLVTGQLATVLQLP 116


>ref|YP_782536.1| hypothetical protein RPE_3626 [Rhodopseudomonas palustris BisA53]
 gb|ABJ07556.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 153

 Score =  170 bits (430), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 96/116 (82%)

Query: 1   MCDYSLHAVASRPAIVGETLITTTFRGTSTRGFASENDPTVAVCMLPGTELAFAENVRYD 60
           MCDYSLHAVA+RPA VGET+I+TTFRGTSTRGFA+ ++P VAVC+LPGTEL F  NVRY+
Sbjct: 1   MCDYSLHAVATRPAKVGETIISTTFRGTSTRGFAAIDEPDVAVCLLPGTELGFQSNVRYE 60

Query: 61  SRWIWTKTLNYRVGVFNEVEPDVPDRHHDAVEFPDGSHVLVTQLVEGQRVSVLQLP 116
            RWIW ++ +++VG F +++    + HHDA+EFPDGS VLVT LV GQ+ +VLQLP
Sbjct: 61  QRWIWPRSADFKVGQFRQIDETARNCHHDAIEFPDGSTVLVTHLVPGQQATVLQLP 116


>ref|ZP_08630637.1| hypothetical protein CSIRO_3747 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP06638.1| hypothetical protein CSIRO_3747 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 138

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 96/139 (69%), Gaps = 8/139 (5%)

Query: 1   MCDYSLHAVASRPAIVGETLITTTFRGTSTRGFASENDPTVAVCMLPGTELAFAENVRYD 60
           MCDYSLHAVASRPA VGETLI+T F  T TRGF  E++P VAVC+LPGTELAFA  V YD
Sbjct: 1   MCDYSLHAVASRPAKVGETLISTKFPLTVTRGFCGEDEPNVAVCVLPGTELAFAREVDYD 60

Query: 61  SRWIWTKTLNYRVGVFNEVEPDVPDRHHDAVEFPDGSHVLVTQLVEGQRVSVLQLPA--L 118
             + + K + + V  F  V+ D P+RHHDA+EFPDG  +L+TQL  GQR +VLQLPA  L
Sbjct: 61  GAF-FRKKVRHTVARFRTVDLDNPNRHHDALEFPDGQLILLTQLDPGQRATVLQLPAVPL 119

Query: 119 HP-----PVEQKPKVVERR 132
            P       E+ P  VE R
Sbjct: 120 RPRTGADTAEEAPSQVEMR 138