BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0096.0019.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771473.1| hypothetical protein bll4833 [Bradyrhizobium ja...   168   3e-40
ref|YP_549151.1| hypothetical protein Bpro_2330 [Polaromonas sp....    83   1e-14
ref|ZP_04764250.1| SPW repeat-containing protein [Acidovorax del...    77   6e-13
ref|YP_002945487.1| hypothetical protein Vapar_3604 [Variovorax ...    76   2e-12
ref|YP_004126146.1| spw repeat-containing protein [Alicycliphilu...    74   1e-11

>ref|NP_771473.1| hypothetical protein bll4833 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50098.1| bll4833 [Bradyrhizobium japonicum USDA 110]
          Length = 123

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 103/120 (85%)

Query: 1   MRIQHWQDAASLLVGAWLVASPFALGFSGAALWISIALGLGVVLFALEAFIIPSYLEEWG 60
           MRIQHWQDA SLLVG WLV S   LG SGAA+WI+IALGLGV+LFA+EAF++PSYLEEWG
Sbjct: 4   MRIQHWQDAGSLLVGVWLVLSSLVLGLSGAAVWITIALGLGVMLFAVEAFVVPSYLEEWG 63

Query: 61  EMLMGLALVVAPWTFSYEPGSVTTSSVLAGIVVIVLACWELTMDRDFATWWHDRWHHRAG 120
           EML+GLALV+APW+  YEP S T SSVL+G++VI+LA WEL  DRDF+TWWHD W HRAG
Sbjct: 64  EMLLGLALVLAPWSIGYEPVSATVSSVLSGLLVILLAAWELITDRDFSTWWHDHWPHRAG 123


>ref|YP_549151.1| hypothetical protein Bpro_2330 [Polaromonas sp. JS666]
 gb|ABE44253.1| conserved hypothetical protein [Polaromonas sp. JS666]
          Length = 131

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 4   QHWQDAASLLVGAWLVASPFALGFSGAALWISIALGLGVVLFA--LEAFIIPSYLEEWGE 61
           +HWQD  + L+G W++ SP+ALGF    + ++ A+ +GV L A  L A  +P   EEW E
Sbjct: 15  KHWQDPLNALIGVWVILSPWALGFQDIQMAMANAVVIGVALLAAGLGATFVPRAWEEWTE 74

Query: 62  MLMGLALVVAPWTFSYE-PGSVTTSSVLAGIVVIVLACWELTMDRDFATWWHDRWHH 117
             +GL L+ +PW   +    +   S+++AGI V+ LA W L  D D+  WW DR  H
Sbjct: 75  GAIGLWLMASPWALGFSMHRNAMLSALIAGIAVVALALWTLLTDEDYNGWWRDRTAH 131


>ref|ZP_04764250.1| SPW repeat-containing protein [Acidovorax delafieldii 2AN]
 gb|EER58942.1| SPW repeat-containing protein [Acidovorax delafieldii 2AN]
          Length = 121

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 2   RIQHWQDAASLLVGAWLVASPFALGFSGAALWISIALGLGVVLFA--LEAFIIPSYLEEW 59
           +++HWQD A+ L+GAW   SP+ L +       +  + +GV+L A  L A ++P   EEW
Sbjct: 3   QVKHWQDPANALLGAWFALSPWVLRYQDQMTPTANGVVVGVLLIAAALGATLVPRAWEEW 62

Query: 60  GEMLMGLALVVAPWTFSYEPG-SVTTSSVLAGIVVIVLACWELTMDRDFATWWHDRWHH 117
            E  +GL ++ +PW   ++       ++ + GIVV+ LA W L  D+D++ WWH R  H
Sbjct: 63  TEGALGLWMIASPWVLGFDMHMDALRNATVTGIVVLGLALWVLASDKDYSAWWHHRSAH 121


>ref|YP_002945487.1| hypothetical protein Vapar_3604 [Variovorax paradoxus S110]
 gb|ACS20221.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 121

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)

Query: 2   RIQHWQDAASLLVGAWLVASPFALGFSG--AALWISIALGLGVVLFALEAFIIPSYLEEW 59
           +++HWQD  ++ +GAWL+ SP+ LGF G  AA+W ++A G+ +   AL A ++P   EEW
Sbjct: 3   QVKHWQDPVNVALGAWLIISPWVLGFQGVTAAMWSAVATGVVLGAVALGATLVPRAWEEW 62

Query: 60  GEMLMGLALVVAPWTFSYEP-GSVTTSSVLAGIVVIVLACWELTMDRDFATWWHDRWHH 117
            E  + + L V+PW   +    +   ++VL    ++VLA W L  D+D+     DR  H
Sbjct: 63  TEGALAIWLAVSPWVLGFATVENAMVNAVLVAAAILVLALWVLVTDKDYLGGSMDRHAH 121


>ref|YP_004126146.1| spw repeat-containing protein [Alicycliphilus denitrificans BC]
 ref|YP_004389273.1| SPW repeat-containing protein [Alicycliphilus denitrificans K601]
 gb|ADU99258.1| SPW repeat-containing protein [Alicycliphilus denitrificans BC]
 gb|AEB85757.1| SPW repeat protein [Alicycliphilus denitrificans K601]
          Length = 124

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 3/113 (2%)

Query: 3   IQHWQDAASLLVGAWLVASPFALGFSGAALWI--SIALGLGVVLFALEAFIIPSYLEEWG 60
           ++HWQD  + L+G WL  SP+ +GF    +    S+  GL ++  +L A  +P   EEW 
Sbjct: 7   MKHWQDPLNALLGVWLALSPWVMGFESQMVPTASSVVAGLALIAVSLGAVFVPRAWEEWT 66

Query: 61  EMLMGLALVVAPWTFSYEPG-SVTTSSVLAGIVVIVLACWELTMDRDFATWWH 112
           +  +G+ ++ +PW   +     V   +V +GIVV+ LA W L  D+D++TW H
Sbjct: 67  QAALGVWMIASPWVLGFSGQMDVMRVAVASGIVVLALALWVLATDKDYSTWMH 119