BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0096.0008.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771488.1| hypothetical protein bll4848 [Bradyrhizobium ja... 331 8e-89 ref|YP_576982.1| hypothetical protein Nham_1706 [Nitrobacter ham... 292 3e-77 ref|YP_318459.1| hypothetical protein Nwi_1847 [Nitrobacter wino... 283 2e-74 ref|ZP_01047947.1| hypothetical protein NB311A_06388 [Nitrobacte... 281 7e-74 ref|YP_532318.1| hypothetical protein RPC_2448 [Rhodopseudomonas... 260 1e-67 >ref|NP_771488.1| hypothetical protein bll4848 [Bradyrhizobium japonicum USDA 110] dbj|BAC50113.1| bll4848 [Bradyrhizobium japonicum USDA 110] Length = 289 Score = 331 bits (848), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 184/288 (63%), Positives = 207/288 (71%), Gaps = 42/288 (14%) Query: 1 MAASMTSAAPSLSSPVGVIAGGGAMPFAVADSLVARGITPVLFALRGACDPARAQRFRHR 60 MAA MTSAA +SSPVGV+AGGGAMPFAVADSL RGITPVLF LRGACDP + ++FRHR Sbjct: 1 MAADMTSAAAGISSPVGVVAGGGAMPFAVADSLATRGITPVLFPLRGACDPVQVEKFRHR 60 Query: 61 WISVGQLGRATRLFRDEGCRDLIFIGTLVRPALSEIRLDWGTLRLLGHVVRAFRGGD--- 117 WISVGQLGRA RLFR+EGCRDLIFIGTLVRP+LSEIR D+ TLRLLG+V+RAFRGGD Sbjct: 61 WISVGQLGRAMRLFREEGCRDLIFIGTLVRPSLSEIRFDFTTLRLLGNVIRAFRGGDDHL 120 Query: 118 ------XLEQQGFRMVGIKDVAPDLLMPEGAVTRAAPDSTALADIARGRGVLDALGPFDI 171 LEQ GFRMVGIKDVAPDLLMPEG ++RA P T+ DI RGR VL ALGPFDI Sbjct: 121 LSGVGRILEQGGFRMVGIKDVAPDLLMPEGCISRAWPSDTSKTDIERGRAVLTALGPFDI 180 Query: 172 GQAAVVIDGHVVAVEDIEGTDGLLPRGA-------------------SPEGAEEQAGFAL 212 GQAAVVIDGHVVAVEDIEGTD LL R A +P+ +++ F L Sbjct: 181 GQAAVVIDGHVVAVEDIEGTDALLARVARLREEGRIRAATGRGVLVKAPKSSQDLR-FDL 239 Query: 213 RSADHRP-------------AXAGNTLAAEPQALVEAADAKGLFVIGL 247 + R AGNT+AAEPQA++ ADAK LF+IGL Sbjct: 240 PTIGPRTIEGVARAGLAGIAVIAGNTIAAEPQAMIALADAKYLFIIGL 287 >ref|YP_576982.1| hypothetical protein Nham_1706 [Nitrobacter hamburgensis X14] gb|ABE62522.1| protein of unknown function DUF1009 [Nitrobacter hamburgensis X14] Length = 285 Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 161/283 (56%), Positives = 188/283 (66%), Gaps = 40/283 (14%) Query: 5 MTSAAPSLSSPVGVIAGGGAMPFAVADSLVARGITPVLFALRGACDPARAQRFRHRWISV 64 MT +SSP+G+IAGGG +PFAVADSLVARGI PV FAL+G CDP + +F+H WI+V Sbjct: 1 MTDRVSDISSPIGLIAGGGVLPFAVADSLVARGIKPVFFALKGVCDPEKVSQFQHHWIAV 60 Query: 65 GQLGRATRLFRDEGCRDLIFIGTLVRPALSEIRLDWGTLRLLGHVVRAFRGGD------- 117 GQ+G+ RL R E CRDL FIGTL+RPALSEIRLDWGT+R++GHV+ AFRGGD Sbjct: 61 GQIGKVARLLRAENCRDLAFIGTLIRPALSEIRLDWGTVRVMGHVLAAFRGGDDHLLSGV 120 Query: 118 --XLEQQGFRMVGIKDVAPDLLMPEGAVTRAAPDSTALADIARGRGVLDALGPFDIGQAA 175 LE+ GFRMVGIKD+APDLLMP G +TR PD +A ADIA+G VL AL PFDIGQA Sbjct: 121 GRILERDGFRMVGIKDIAPDLLMPAGCLTRKTPDQSATADIAKGLDVLRALSPFDIGQAV 180 Query: 176 VVIDGHVVAVEDIEGTDGLLPRGAS--PEG---AEEQAGFALRSADH------------- 217 VVIDGHVV VE IEGTD LL R A EG A+ G +++ + Sbjct: 181 VVIDGHVVGVEGIEGTDALLARIAQLRAEGRIRAKTARGVLVKAPKNGQDLRYDLPTLGP 240 Query: 218 -------------RPAXAGNTLAAEPQALVEAADAKGLFVIGL 247 AGNTL AEPQALV AADA LFV+GL Sbjct: 241 RTIENAAAAGLAGMAVVAGNTLVAEPQALVGAADASSLFVVGL 283 >ref|YP_318459.1| hypothetical protein Nwi_1847 [Nitrobacter winogradskyi Nb-255] gb|ABA05107.1| Protein of unknown function DUF1009 [Nitrobacter winogradskyi Nb-255] Length = 288 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 158/283 (55%), Positives = 182/283 (64%), Gaps = 40/283 (14%) Query: 5 MTSAAPSLSSPVGVIAGGGAMPFAVADSLVARGITPVLFALRGACDPARAQRFRHRWISV 64 MT +SSP+G+IAGGG +PFAVADSL ARG+ PV FAL+G CDP R RF H WI+V Sbjct: 4 MTDRVSGMSSPIGLIAGGGVLPFAVADSLTARGLKPVFFALKGVCDPERVSRFPHHWIAV 63 Query: 65 GQLGRATRLFRDEGCRDLIFIGTLVRPALSEIRLDWGTLRLLGHVVRAFRGGD------- 117 GQ+G+ RL R E CRDL+FIGTLVRPALSEIRLDWGT+R +G V+ AFRGGD Sbjct: 64 GQIGKVMRLLRAENCRDLVFIGTLVRPALSEIRLDWGTIRAMGQVLAAFRGGDDHLLSGV 123 Query: 118 --XLEQQGFRMVGIKDVAPDLLMPEGAVTRAAPDSTALADIARGRGVLDALGPFDIGQAA 175 LE+ GFRMVGIKD+APDLLMP G +TR APD +A ADIA+G VL AL PFD+GQA Sbjct: 124 GRILERDGFRMVGIKDIAPDLLMPAGCLTRKAPDQSAAADIAKGLDVLRALSPFDVGQAV 183 Query: 176 VVIDGHVVAVEDIEGTDGLLPRGASPEG-----AEEQAGFALRSADH------------- 217 VVID HVV VE IEGTD LL R A A+ G +++ H Sbjct: 184 VVIDAHVVGVEGIEGTDALLARIAQLRAAGRIRAKAPRGVLVKAPKHGQDLRYDLPTLGP 243 Query: 218 -------------RPAXAGNTLAAEPQALVEAADAKGLFVIGL 247 AGNTL AEPQALV ADA LFV+GL Sbjct: 244 RTIANAAAAGLAGLAVVAGNTLVAEPQALVGEADASNLFVVGL 286 >ref|ZP_01047947.1| hypothetical protein NB311A_06388 [Nitrobacter sp. Nb-311A] gb|EAQ34081.1| hypothetical protein NB311A_06388 [Nitrobacter sp. Nb-311A] Length = 285 Score = 281 bits (719), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 156/284 (54%), Positives = 183/284 (64%), Gaps = 40/284 (14%) Query: 5 MTSAAPSLSSPVGVIAGGGAMPFAVADSLVARGITPVLFALRGACDPARAQRFRHRWISV 64 MT SSP+G+IAGGG +PFAVADSL ARG+ PV FAL+G CDP R F H WI+V Sbjct: 1 MTDRVSDTSSPIGLIAGGGVLPFAVADSLTARGLKPVFFALKGVCDPERVSHFPHHWIAV 60 Query: 65 GQLGRATRLFRDEGCRDLIFIGTLVRPALSEIRLDWGTLRLLGHVVRAFRGGD------- 117 GQ+G+ RL R E CRDL+FIGTLVRPALSEIRLDWGT+R++G V+ AFRGGD Sbjct: 61 GQIGKVVRLLRAENCRDLVFIGTLVRPALSEIRLDWGTIRVMGQVLAAFRGGDDHLLSGI 120 Query: 118 --XLEQQGFRMVGIKDVAPDLLMPEGAVTRAAPDSTALADIARGRGVLDALGPFDIGQAA 175 LE+ GFRM+GIKD+APDLLMP G +TR PD +A ADIA+G VL AL PFD+GQA Sbjct: 121 GRILERDGFRMMGIKDIAPDLLMPAGCLTRKTPDRSAAADIAKGLDVLRALSPFDVGQAV 180 Query: 176 VVIDGHVVAVEDIEGTDGLLPRGAS--PEG---AEEQAGFALRSADH------------- 217 VVIDGHV+ VE IEGTD LL R A EG + G +++ H Sbjct: 181 VVIDGHVIGVEGIEGTDALLARVAQLRAEGRIRTKAARGVLVKAPKHGQDLRYDLPTLGP 240 Query: 218 -------------RPAXAGNTLAAEPQALVEAADAKGLFVIGLA 248 AGNTL AEPQALV ADA LFV+GL+ Sbjct: 241 QTIENAAAAGLAGLAVVAGNTLVAEPQALVGKADASNLFVVGLS 284 >ref|YP_532318.1| hypothetical protein RPC_2448 [Rhodopseudomonas palustris BisB18] gb|ABD87999.1| protein of unknown function DUF1009 [Rhodopseudomonas palustris BisB18] Length = 284 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 140/285 (49%), Positives = 180/285 (63%), Gaps = 56/285 (19%) Query: 11 SLSSPVGVIAGGGAMPFAVADSLVARGITPVLFALRGACDPARAQRFRHRWISVGQLGRA 70 +SSP+G++AGGG +PFAVADSL+ARGITP++FAL G CD A R+RH WIS+G+ GR Sbjct: 6 QISSPIGLVAGGGVLPFAVADSLLARGITPIIFALNGFCDAAALHRYRHHWISIGRFGRL 65 Query: 71 TRLFRDEGCRDLIFIGTLVRPALSEIRLDWGTLRLLGHVVRAFRGGD---------XLEQ 121 +L R E CR+L+FIG +VRP+LSE+RLDWG ++++ V+ A+RGGD E+ Sbjct: 66 QKLLRAEHCRELVFIGAVVRPSLSEVRLDWGAVKVIRAVMAAYRGGDDHLLSGIGQIFEK 125 Query: 122 QGFRMVGIKDVAPDLLMPEGAVTRAAPDSTALADIARGRGVLDALGPFDIGQAAVVIDGH 181 GFR++GI+DVAPDLLMP G +TRA PD + +ADIA+GR VL AL PFDIGQ VVIDGH Sbjct: 126 DGFRLLGIRDVAPDLLMPAGCLTRATPDGSTVADIAKGRAVLAALSPFDIGQGCVVIDGH 185 Query: 182 VVAVEDIEGTDGLL---------------------------------------PRGASPE 202 VVAVEDI GTD LL PR + Sbjct: 186 VVAVEDIGGTDALLASVARLRAQRLIRAKPRRGVLVKAPKVGQNLRFDLPALGPRTIAGV 245 Query: 203 GAEEQAGFALRSADHRPAXAGNTLAAEPQALVEAADAKGLFVIGL 247 A E AG A+ AG+T+ AEPQ +++AAD GLF+ G+ Sbjct: 246 AAAELAGIAV--------VAGHTVVAEPQPMIDAADRAGLFITGM 282