BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0095.0052.p (415 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001238327.1| hypothetical protein BBta_2243 [Bradyrhizobi... 326 4e-87 ref|YP_001204035.1| hypothetical protein BRADO1935 [Bradyrhizobi... 322 9e-86 ref|NP_769087.1| lytic murein transglycosylase [Bradyrhizobium j... 320 2e-85 ref|YP_531256.1| lytic murein transglycosylase [Rhodopseudomonas... 315 1e-83 ref|YP_001993845.1| lytic murein transglycosylase [Rhodopseudomo... 313 5e-83 >ref|YP_001238327.1| hypothetical protein BBta_2243 [Bradyrhizobium sp. BTAi1] gb|ABQ34421.1| hypothetical protein BBta_2243 [Bradyrhizobium sp. BTAi1] Length = 412 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 155/187 (82%), Positives = 167/187 (89%) Query: 39 SPRAASCHNGQNFDRFLAELKQNAAAVGVSQCTMAEAAPYLIYDQGIVNRDRGQRVFGQI 98 S RAASCHNGQ+FDRFLAELKQ A A GVSQ +A A+PYL YDQGIVNRDRGQRVFGQ+ Sbjct: 15 SMRAASCHNGQSFDRFLAELKQRAVAEGVSQRAIAAASPYLTYDQGIVNRDRGQRVFGQL 74 Query: 99 FTQFAGRMAANYRMQQGQQYIRTYAAAFARAEKEYGVPPAVIAAFWGLESDFGVQMGNLP 158 FT+FAGRMAA YRMQ GQQ+I+ +AAAFARAEK+YGVPPAVIAAFWGLESDFG MGNLP Sbjct: 75 FTEFAGRMAAVYRMQNGQQHIKMHAAAFARAEKDYGVPPAVIAAFWGLESDFGANMGNLP 134 Query: 159 TLKSLVSLAYDCRRSEMFQGETIAALKIIERGDLTPDEMIGSWAGELGQTQFLPTHYFNY 218 L SLVSLAYDCRRSE FQ ETIAALK+I+RGDL+P EMIGSWAGELGQTQFLPTHY Y Sbjct: 135 VLPSLVSLAYDCRRSERFQNETIAALKVIDRGDLSPTEMIGSWAGELGQTQFLPTHYVTY 194 Query: 219 AVDYDGD 225 AVDYDGD Sbjct: 195 AVDYDGD 201 >ref|YP_001204035.1| hypothetical protein BRADO1935 [Bradyrhizobium sp. ORS 278] emb|CAL75798.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 412 Score = 322 bits (824), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 161/201 (80%), Positives = 172/201 (85%) Query: 25 LNPAPVRPRPAVDASPRAASCHNGQNFDRFLAELKQNAAAVGVSQCTMAEAAPYLIYDQG 84 + P P PRP S RAA+CHNGQNFDRFLAELKQ A A GVSQ +A A+PYL YDQG Sbjct: 1 MAPEPAAPRPKQAPSMRAAACHNGQNFDRFLAELKQRAVAEGVSQRAIAAASPYLTYDQG 60 Query: 85 IVNRDRGQRVFGQIFTQFAGRMAANYRMQQGQQYIRTYAAAFARAEKEYGVPPAVIAAFW 144 IVNRDRGQRVFGQ+FT+FAGRMAA YRMQ GQQ+I+ +AAAFARAEKEYGVPPAVIAAFW Sbjct: 61 IVNRDRGQRVFGQLFTEFAGRMAAVYRMQNGQQHIKAHAAAFARAEKEYGVPPAVIAAFW 120 Query: 145 GLESDFGVQMGNLPTLKSLVSLAYDCRRSEMFQGETIAALKIIERGDLTPDEMIGSWAGE 204 GLESDFG MGNLP L SLVSLAYDCRRSE FQ ETIAALK+I+RGDLTP EMIGSWAGE Sbjct: 121 GLESDFGSNMGNLPVLPSLVSLAYDCRRSERFQNETIAALKVIDRGDLTPTEMIGSWAGE 180 Query: 205 LGQTQFLPTHYFNYAVDYDGD 225 LGQTQFLPTHY Y VDYDGD Sbjct: 181 LGQTQFLPTHYVTYGVDYDGD 201 >ref|NP_769087.1| lytic murein transglycosylase [Bradyrhizobium japonicum USDA 110] dbj|BAC47712.1| lytic murein transglycosylase [Bradyrhizobium japonicum USDA 110] Length = 433 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 157/185 (84%), Positives = 170/185 (91%) Query: 41 RAASCHNGQNFDRFLAELKQNAAAVGVSQCTMAEAAPYLIYDQGIVNRDRGQRVFGQIFT 100 RAASCHNG +FDRFLA++KQ A A GVSQ T++EA+PYL+YDQGIVNRDRGQRVFGQ+FT Sbjct: 42 RAASCHNGASFDRFLADVKQQAVAAGVSQRTISEASPYLVYDQGIVNRDRGQRVFGQLFT 101 Query: 101 QFAGRMAANYRMQQGQQYIRTYAAAFARAEKEYGVPPAVIAAFWGLESDFGVQMGNLPTL 160 +FAGRMAA YRMQ GQQ+I+ +AAAFARAEKEYGVPPAVIAAFWGLESDFG MGNLPTL Sbjct: 102 EFAGRMAAPYRMQNGQQHIKAHAAAFARAEKEYGVPPAVIAAFWGLESDFGANMGNLPTL 161 Query: 161 KSLVSLAYDCRRSEMFQGETIAALKIIERGDLTPDEMIGSWAGELGQTQFLPTHYFNYAV 220 KSLVSLAYDCRRSEMF ETIAALKII+RGDLT DEMIGSWAGELGQTQFLP HY NYAV Sbjct: 162 KSLVSLAYDCRRSEMFVNETIAALKIIDRGDLTADEMIGSWAGELGQTQFLPVHYVNYAV 221 Query: 221 DYDGD 225 DYDGD Sbjct: 222 DYDGD 226 >ref|YP_531256.1| lytic murein transglycosylase [Rhodopseudomonas palustris BisB18] gb|ABD86937.1| Lytic murein transglycosylase [Rhodopseudomonas palustris BisB18] Length = 412 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 151/192 (78%), Positives = 169/192 (88%), Gaps = 2/192 (1%) Query: 34 PAVDASPRAASCHNGQNFDRFLAELKQNAAAVGVSQCTMAEAAPYLIYDQGIVNRDRGQR 93 PA AS A+CH GQ+F++FLA LKQ AAA GVS +A A+P L+YDQGIVNRDRGQR Sbjct: 18 PAFAAS--GAACHGGQSFEQFLASLKQQAAADGVSPRAIAAASPGLVYDQGIVNRDRGQR 75 Query: 94 VFGQIFTQFAGRMAANYRMQQGQQYIRTYAAAFARAEKEYGVPPAVIAAFWGLESDFGVQ 153 VFGQ+FT+FAGRMAANYRMQQGQ I+T+A AFARAE++YGVPPAVIAAFWGLESDFG Sbjct: 76 VFGQVFTEFAGRMAANYRMQQGQAMIKTHARAFARAEQDYGVPPAVIAAFWGLESDFGAN 135 Query: 154 MGNLPTLKSLVSLAYDCRRSEMFQGETIAALKIIERGDLTPDEMIGSWAGELGQTQFLPT 213 MG LPTL+SLVSLAYDCRR++MF+ ETIAALKII+RGDL P EMIGSWAGELGQTQFLPT Sbjct: 136 MGKLPTLRSLVSLAYDCRRAKMFEAETIAALKIIDRGDLAPSEMIGSWAGELGQTQFLPT 195 Query: 214 HYFNYAVDYDGD 225 HYFNYAVDYDGD Sbjct: 196 HYFNYAVDYDGD 207 >ref|YP_001993845.1| lytic murein transglycosylase [Rhodopseudomonas palustris TIE-1] gb|ACF03370.1| lytic murein transglycosylase [Rhodopseudomonas palustris TIE-1] Length = 442 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 150/185 (81%), Positives = 161/185 (87%) Query: 41 RAASCHNGQNFDRFLAELKQNAAAVGVSQCTMAEAAPYLIYDQGIVNRDRGQRVFGQIFT 100 R ASCH GQ+F +FLA LKQ A A GVSQ +AEA+PYL+YDQGIVNRDRGQRVFGQIFT Sbjct: 31 RGASCHGGQSFPQFLAGLKQKAVAAGVSQGAIAEASPYLVYDQGIVNRDRGQRVFGQIFT 90 Query: 101 QFAGRMAANYRMQQGQQYIRTYAAAFARAEKEYGVPPAVIAAFWGLESDFGVQMGNLPTL 160 FAGRMA+ R +GQQ I+ YA AFARAEKEYGVPPAVIAAFW LESDFG GNLPTL Sbjct: 91 VFAGRMASEGRRVKGQQLIKQYAQAFARAEKEYGVPPAVIAAFWALESDFGAVQGNLPTL 150 Query: 161 KSLVSLAYDCRRSEMFQGETIAALKIIERGDLTPDEMIGSWAGELGQTQFLPTHYFNYAV 220 +SLVSLAYDCRRSEMFQ ETIAALKII+RGDLTP EMIGSWAGELGQTQFLP HYF+YAV Sbjct: 151 RSLVSLAYDCRRSEMFQDETIAALKIIDRGDLTPGEMIGSWAGELGQTQFLPRHYFDYAV 210 Query: 221 DYDGD 225 DYDGD Sbjct: 211 DYDGD 215