BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0095.0021.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_319227.1| polynucleotide adenylyltransferase region [Nitr... 477 e-132 ref|NP_769109.1| poly(A) polymerase [Bradyrhizobium japonicum US... 476 e-132 ref|YP_001204067.1| putative poly(A) polymerase [Bradyrhizobium ... 470 e-130 ref|YP_001238359.1| putative poly(A) polymerase [Bradyrhizobium ... 469 e-130 ref|YP_578442.1| polynucleotide adenylyltransferase region [Nitr... 465 e-129 >ref|YP_319227.1| polynucleotide adenylyltransferase region [Nitrobacter winogradskyi Nb-255] gb|ABA05875.1| polynucleotide adenylyltransferase region [Nitrobacter winogradskyi Nb-255] Length = 418 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 239/325 (73%), Positives = 267/325 (82%) Query: 1 VTTLREDTETYGRKARVAFGRDWVRDAERRDFTINGLSVDASGVVHDHVGGLADIEARRV 60 VTTLRED ET+GRKARVAFGRDW RDA+RRDFTINGLSVD+ G VHDHVGGL DI ARRV Sbjct: 94 VTTLREDVETFGRKARVAFGRDWARDAQRRDFTINGLSVDSGGTVHDHVGGLDDIAARRV 153 Query: 61 RFIGDPAQRIAEDYLRILRLFRFHAAYGVGEVDRAGYLACVSGRAGLAGLSAERIRMEML 120 RFIGDP +RIAEDYLRILR FR HAAYG GE DR GYLAC+ GRAGLA LSAER+R E+L Sbjct: 154 RFIGDPDRRIAEDYLRILRFFRIHAAYGAGEPDRDGYLACIRGRAGLATLSAERLRAEIL 213 Query: 121 KLVVANGAASAVVAMSDGGLLQPLFGGIAYTGPFAAMIEIEQLMKLAPSAMRRLAALTVA 180 KL++A+GA A VAM DGGLL +FGG+AY GP AAM+ E ++LAP +RRLAAL V+ Sbjct: 214 KLLLADGAVEAAVAMEDGGLLLAVFGGVAYRGPLAAMMAAESALELAPDPIRRLAALAVS 273 Query: 181 VTEDARRIASRLRLSNAEAKALDSMGHRWWRLPGMDEAHAKRRLYRLDEEPYRDRLLLAW 240 VTEDARR+A RLRLSNAEAK LDSMGHRWWRL MDEA A+RRLYRL +RDRL+ AW Sbjct: 274 VTEDARRLAQRLRLSNAEAKQLDSMGHRWWRLGSMDEATARRRLYRLGATRFRDRLMQAW 333 Query: 241 ARTGAGQDVDQWRALATLPERWRAPHFPLRASDFVARGIAEGPALGHVLTLAEDAWLAAD 300 ++ G G D W +ATLP RW+ P FPL+A DF+ RGIAEGPALGHVLTLAEDAWLA D Sbjct: 334 SKAGLGADPAPWLNVATLPRRWQPPAFPLKAEDFIVRGIAEGPALGHVLTLAEDAWLAED 393 Query: 301 FPLDPQVLSGIADQTVSRFTRDHRL 325 FPLD LS IADQTV+RFTRDHRL Sbjct: 394 FPLDSARLSAIADQTVARFTRDHRL 418 >ref|NP_769109.1| poly(A) polymerase [Bradyrhizobium japonicum USDA 110] dbj|BAC47734.1| poly(A) polymerase [Bradyrhizobium japonicum USDA 110] Length = 418 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 235/324 (72%), Positives = 273/324 (84%) Query: 1 VTTLREDTETYGRKARVAFGRDWVRDAERRDFTINGLSVDASGVVHDHVGGLADIEARRV 60 VTTLREDTET+GRKA+VAFGRDWV+DAERRDFT+NGLSVDA+GVV+DHVGG+AD ARRV Sbjct: 94 VTTLREDTETFGRKAKVAFGRDWVKDAERRDFTMNGLSVDATGVVYDHVGGIADARARRV 153 Query: 61 RFIGDPAQRIAEDYLRILRLFRFHAAYGVGEVDRAGYLACVSGRAGLAGLSAERIRMEML 120 RFIGDP QRIAEDYLRILR FR HAA+G GE DR GYLAC+ GRAGLA LSAER+RMEML Sbjct: 154 RFIGDPDQRIAEDYLRILRFFRIHAAFGAGEPDRDGYLACIRGRAGLASLSAERVRMEML 213 Query: 121 KLVVANGAASAVVAMSDGGLLQPLFGGIAYTGPFAAMIEIEQLMKLAPSAMRRLAALTVA 180 KL+VA GA++AV+AM++GGLLQ L GG+AYTGP A+M+ IE+ + L S RRLAALTVA Sbjct: 214 KLLVAGGASAAVLAMAEGGLLQALIGGVAYTGPLASMVAIERELGLPASVTRRLAALTVA 273 Query: 181 VTEDARRIASRLRLSNAEAKALDSMGHRWWRLPGMDEAHAKRRLYRLDEEPYRDRLLLAW 240 VTEDA+R+A+RLRLSNAEAKALDSMGHRWWR DEA+A+R LYRL E Y DR+LL W Sbjct: 274 VTEDAKRVATRLRLSNAEAKALDSMGHRWWRFATKDEANARRLLYRLGAERYHDRVLLGW 333 Query: 241 ARTGAGQDVDQWRALATLPERWRAPHFPLRASDFVARGIAEGPALGHVLTLAEDAWLAAD 300 AR +WR LA LP+RW AP FPLRA+DF+ARG+AEGPALGHVLTLAEDAWLAAD Sbjct: 334 ARAAGDVHSSRWRELAELPQRWTAPKFPLRAADFIARGMAEGPALGHVLTLAEDAWLAAD 393 Query: 301 FPLDPQVLSGIADQTVSRFTRDHR 324 FPL+ L+ IADQ +R +R+ + Sbjct: 394 FPLEEAALASIADQAAARVSRERK 417 >ref|YP_001204067.1| putative poly(A) polymerase [Bradyrhizobium sp. ORS 278] emb|CAL75830.1| putative poly(A) polymerase [Bradyrhizobium sp. ORS 278] Length = 417 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 232/324 (71%), Positives = 263/324 (81%) Query: 1 VTTLREDTETYGRKARVAFGRDWVRDAERRDFTINGLSVDASGVVHDHVGGLADIEARRV 60 VTTLREDTET+GRKA+VAFGRDWV DA RRDFTIN LSV A GVVHDHVGGLADIEARRV Sbjct: 93 VTTLREDTETFGRKAKVAFGRDWVGDAHRRDFTINALSVGADGVVHDHVGGLADIEARRV 152 Query: 61 RFIGDPAQRIAEDYLRILRLFRFHAAYGVGEVDRAGYLACVSGRAGLAGLSAERIRMEML 120 RFIGDP+QRIAEDYLRILR FR H+A+G GE DR GYLAC++GR GLA LSAER+RMEML Sbjct: 153 RFIGDPSQRIAEDYLRILRFFRIHSAFGHGEPDREGYLACIAGRGGLATLSAERVRMEML 212 Query: 121 KLVVANGAASAVVAMSDGGLLQPLFGGIAYTGPFAAMIEIEQLMKLAPSAMRRLAALTVA 180 KL+V GA AV AM+DGGLL + GG+AY GPFAAMI+IE+ + L PS +RRLAAL VA Sbjct: 213 KLLVTEGAVGAVTAMADGGLLTSILGGVAYVGPFAAMIDIERELSLPPSPVRRLAALAVA 272 Query: 181 VTEDARRIASRLRLSNAEAKALDSMGHRWWRLPGMDEAHAKRRLYRLDEEPYRDRLLLAW 240 VTEDARR+ +RL+LSNAE KALD MGHRWWR DEA +R LYRL E YRDRL+L W Sbjct: 273 VTEDARRLGARLKLSNAETKALDGMGHRWWRFASADEARGRRLLYRLGETVYRDRLMLGW 332 Query: 241 ARTGAGQDVDQWRALATLPERWRAPHFPLRASDFVARGIAEGPALGHVLTLAEDAWLAAD 300 AR+G +D WR LA LP+R+ P PL+A+DF+ARG+AEGP LGHVLTLAEDAWLAAD Sbjct: 333 ARSGCRRDAQHWRELALLPQRFTPPKLPLKAADFIARGVAEGPLLGHVLTLAEDAWLAAD 392 Query: 301 FPLDPQVLSGIADQTVSRFTRDHR 324 FPLD L+ IADQ +R RD R Sbjct: 393 FPLDEASLTAIADQAAARVNRDGR 416 >ref|YP_001238359.1| putative poly(A) polymerase [Bradyrhizobium sp. BTAi1] gb|ABQ34453.1| putative poly(A) polymerase [Bradyrhizobium sp. BTAi1] Length = 417 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 234/325 (72%), Positives = 263/325 (80%) Query: 1 VTTLREDTETYGRKARVAFGRDWVRDAERRDFTINGLSVDASGVVHDHVGGLADIEARRV 60 VTTLREDTET+GRKA+V FGRDW+ DA RRDFTIN LSV GVVHDHVGGLADI ARRV Sbjct: 93 VTTLREDTETFGRKAKVEFGRDWIGDAHRRDFTINALSVGPDGVVHDHVGGLADIAARRV 152 Query: 61 RFIGDPAQRIAEDYLRILRLFRFHAAYGVGEVDRAGYLACVSGRAGLAGLSAERIRMEML 120 RFIGDPAQRIAEDYLRILR FR H+A+G G DR GYLAC++GRAGLA LSAER+RMEML Sbjct: 153 RFIGDPAQRIAEDYLRILRFFRIHSAFGHGVPDRDGYLACIAGRAGLATLSAERVRMEML 212 Query: 121 KLVVANGAASAVVAMSDGGLLQPLFGGIAYTGPFAAMIEIEQLMKLAPSAMRRLAALTVA 180 KL+V GA AV AM+DGGLL + GG+AY GPFAAMIEIE+ + L PSA+RRLAAL VA Sbjct: 213 KLLVTEGAVGAVTAMTDGGLLTAILGGVAYLGPFAAMIEIERTLALPPSAVRRLAALAVA 272 Query: 181 VTEDARRIASRLRLSNAEAKALDSMGHRWWRLPGMDEAHAKRRLYRLDEEPYRDRLLLAW 240 VTEDARR+ +RL+LSNAE KALD MGHRWWRL DEA A+R LYRL E YRDRL+L W Sbjct: 273 VTEDARRLGARLKLSNAETKALDGMGHRWWRLATADEARARRLLYRLGETVYRDRLMLGW 332 Query: 241 ARTGAGQDVDQWRALATLPERWRAPHFPLRASDFVARGIAEGPALGHVLTLAEDAWLAAD 300 AR G D +WR LA LP+R+ P PL+A+DF+ARG+AEGP LGHVLTLAEDAWLAAD Sbjct: 333 ARAGRDHDAQRWRELALLPQRFTPPKLPLKAADFIARGVAEGPLLGHVLTLAEDAWLAAD 392 Query: 301 FPLDPQVLSGIADQTVSRFTRDHRL 325 FPLD LS IADQ +R RD R+ Sbjct: 393 FPLDEASLSAIADQAAARVNRDGRI 417 >ref|YP_578442.1| polynucleotide adenylyltransferase region [Nitrobacter hamburgensis X14] gb|ABE63982.1| Polynucleotide adenylyltransferase region [Nitrobacter hamburgensis X14] Length = 418 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 243/325 (74%), Positives = 267/325 (82%) Query: 1 VTTLREDTETYGRKARVAFGRDWVRDAERRDFTINGLSVDASGVVHDHVGGLADIEARRV 60 +TTLRED ET+GRKARVAFGRDW RDAERRDFTINGLSV + G VHDHVGGL DI ARRV Sbjct: 94 ITTLREDVETFGRKARVAFGRDWARDAERRDFTINGLSVGSDGTVHDHVGGLDDIAARRV 153 Query: 61 RFIGDPAQRIAEDYLRILRLFRFHAAYGVGEVDRAGYLACVSGRAGLAGLSAERIRMEML 120 RFIGDP +RIAEDYLRILR FR HAAYG GE DRAGYLAC+ GRAGLA LSAER+R EML Sbjct: 154 RFIGDPDRRIAEDYLRILRFFRIHAAYGAGEPDRAGYLACIRGRAGLATLSAERLRAEML 213 Query: 121 KLVVANGAASAVVAMSDGGLLQPLFGGIAYTGPFAAMIEIEQLMKLAPSAMRRLAALTVA 180 KL+VA GA A+VAM DGGLL + GG+AY GP AAMI E+ + LAP +RRLAAL V+ Sbjct: 214 KLLVAEGAVEALVAMEDGGLLLAILGGVAYRGPLAAMIAAERALGLAPDPIRRLAALAVS 273 Query: 181 VTEDARRIASRLRLSNAEAKALDSMGHRWWRLPGMDEAHAKRRLYRLDEEPYRDRLLLAW 240 VTEDARR+A RLRLSNAEAK LDSMGHRWWRL MDEA A+RRLYRL +RDRL+ AW Sbjct: 274 VTEDARRVAQRLRLSNAEAKQLDSMGHRWWRLGSMDEATARRRLYRLGAPRFRDRLMQAW 333 Query: 241 ARTGAGQDVDQWRALATLPERWRAPHFPLRASDFVARGIAEGPALGHVLTLAEDAWLAAD 300 AR G G D W +ATLP+RW+ P FPL+A DFV RGIA GPALGHVLT+AEDAWLAAD Sbjct: 334 ARAGLGADPGLWLNVATLPQRWQPPAFPLKAEDFVGRGIAAGPALGHVLTIAEDAWLAAD 393 Query: 301 FPLDPQVLSGIADQTVSRFTRDHRL 325 FPLD LS IADQTV+RFTRDHRL Sbjct: 394 FPLDSAQLSAIADQTVARFTRDHRL 418