BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0095.0020.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001204068.1| hypothetical protein BRADO1969 [Bradyrhizobi... 371 e-101 ref|YP_001238361.1| hypothetical protein BBta_2278 [Bradyrhizobi... 362 3e-98 ref|NP_769110.1| hypothetical protein blr2470 [Bradyrhizobium ja... 354 8e-96 ref|ZP_06054734.1| putative membrane protein [alpha proteobacter... 114 1e-23 ref|YP_001205310.1| hypothetical protein BRADO3283 [Bradyrhizobi... 93 3e-17 >ref|YP_001204068.1| hypothetical protein BRADO1969 [Bradyrhizobium sp. ORS 278] emb|CAL75831.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 258 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/251 (78%), Positives = 224/251 (89%) Query: 1 LNFLSGFADISLLQILLVAAVALFASVIGGLAGYGTGALMPLVLVPMVGAEPVVPIIAIS 60 + FL+GFADISLLQ+LLVA+VALFAS+IGGLAGYGTGALMPLVLVPMVGAEPVVPIIAIS Sbjct: 1 MTFLAGFADISLLQLLLVASVALFASIIGGLAGYGTGALMPLVLVPMVGAEPVVPIIAIS 60 Query: 61 SIFTNSSRFVAFVRFADRRKAIIVIAAALFSTALGAYGYTRLTSAGASLVIGGMLILSVP 120 +I TN SR A+++ ADR +A IVI AA +TALGAYGYTRLT+AGA+ VIG MLI+SVP Sbjct: 61 AILTNLSRVAAYIQHADRTRACIVIGAAAVTTALGAYGYTRLTNAGAAFVIGTMLIMSVP 120 Query: 121 LRRLLRKHRVRIGERGLAVGAVGYGVVVGGTAGSGVILLSLLMAAGLEGAAVVATDAVIS 180 LRR+LR VRIG GLA GAVGYGV+VGGT+GSGVILLSLLMAAGLEGAAV+ATDA+IS Sbjct: 121 LRRILRNRDVRIGHGGLAAGAVGYGVLVGGTSGSGVILLSLLMAAGLEGAAVIATDAMIS 180 Query: 181 LTSAAVKISVFGLTGVITAQVLALALLIGLVAIPGAFLAKAFVARMPVHIHTAILDAAVV 240 + + +KISVFGL GV+TAQVLA ALLIG +A+PGAFLAKAFVARMPVHIH AILDAAV+ Sbjct: 181 VVTGVIKISVFGLAGVVTAQVLAFALLIGAIAVPGAFLAKAFVARMPVHIHAAILDAAVI 240 Query: 241 TGGVVMIASAL 251 TGG VMIASAL Sbjct: 241 TGGGVMIASAL 251 >ref|YP_001238361.1| hypothetical protein BBta_2278 [Bradyrhizobium sp. BTAi1] gb|ABQ34455.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 258 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 202/251 (80%), Positives = 227/251 (90%) Query: 1 LNFLSGFADISLLQILLVAAVALFASVIGGLAGYGTGALMPLVLVPMVGAEPVVPIIAIS 60 +NFL+GFADISLLQ+LLVA+VALFAS+IGGLAGYGTGALMPLVLVPMVGAEPVVPIIAIS Sbjct: 1 MNFLAGFADISLLQLLLVASVALFASIIGGLAGYGTGALMPLVLVPMVGAEPVVPIIAIS 60 Query: 61 SIFTNSSRFVAFVRFADRRKAIIVIAAALFSTALGAYGYTRLTSAGASLVIGGMLILSVP 120 +I TN SR VA++ ADR +A IVIAAA +TALGAYGYTRLT+AGA+ VIG MLI+SVP Sbjct: 61 AILTNLSRVVAYISHADRTRAGIVIAAAAVTTALGAYGYTRLTNAGAAFVIGTMLIMSVP 120 Query: 121 LRRLLRKHRVRIGERGLAVGAVGYGVVVGGTAGSGVILLSLLMAAGLEGAAVVATDAVIS 180 LRR+LRK VRIG GLA GAVGYGV+VGGT+GSGVILLSLLMAAGLEGAAV+ATDA+IS Sbjct: 121 LRRILRKREVRIGNGGLAAGAVGYGVLVGGTSGSGVILLSLLMAAGLEGAAVIATDAMIS 180 Query: 181 LTSAAVKISVFGLTGVITAQVLALALLIGLVAIPGAFLAKAFVARMPVHIHTAILDAAVV 240 + + +KISVFGL GV+TAQVLA ALLIG +A+PGAFLAKAFVARMPVHIH AILDAAV+ Sbjct: 181 VATGVIKISVFGLAGVVTAQVLAFALLIGAIAVPGAFLAKAFVARMPVHIHAAILDAAVI 240 Query: 241 TGGVVMIASAL 251 TGG VMIASAL Sbjct: 241 TGGGVMIASAL 251 >ref|NP_769110.1| hypothetical protein blr2470 [Bradyrhizobium japonicum USDA 110] dbj|BAC47735.1| blr2470 [Bradyrhizobium japonicum USDA 110] Length = 256 Score = 354 bits (908), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 195/250 (78%), Positives = 229/250 (91%) Query: 1 LNFLSGFADISLLQILLVAAVALFASVIGGLAGYGTGALMPLVLVPMVGAEPVVPIIAIS 60 + +SGFADIS+ Q+LLVA +ALFAS+IGGLAGYGTGALMPLVLVP+VGAEPVVPIIAIS Sbjct: 1 MTIVSGFADISIFQLLLVALMALFASIIGGLAGYGTGALMPLVLVPLVGAEPVVPIIAIS 60 Query: 61 SIFTNSSRFVAFVRFADRRKAIIVIAAALFSTALGAYGYTRLTSAGASLVIGGMLILSVP 120 +IFTNSSR +A+VR+ADRR+A+IV+A A +TALGAYGYTRLT+AGA+LVIG MLILSVP Sbjct: 61 AIFTNSSRALAYVRYADRRRALIVLACAALTTALGAYGYTRLTNAGAALVIGTMLILSVP 120 Query: 121 LRRLLRKHRVRIGERGLAVGAVGYGVVVGGTAGSGVILLSLLMAAGLEGAAVVATDAVIS 180 LRR+LR+ +VRIG+ GLA G+VGYGV+VGGT+GSGVILLSLLMAAGLEGAAV+ATDA+IS Sbjct: 121 LRRVLRRRQVRIGDTGLAAGSVGYGVLVGGTSGSGVILLSLLMAAGLEGAAVIATDAMIS 180 Query: 181 LTSAAVKISVFGLTGVITAQVLALALLIGLVAIPGAFLAKAFVARMPVHIHTAILDAAVV 240 L + +KISVFGL G + AQVLA ALLIG +AIPGAFLAKAFV RMPVHIHTAILDAAV+ Sbjct: 181 LGTGLIKISVFGLAGAVNAQVLAFALLIGAIAIPGAFLAKAFVERMPVHIHTAILDAAVI 240 Query: 241 TGGVVMIASA 250 TGG+VMI++A Sbjct: 241 TGGLVMISAA 250 >ref|ZP_06054734.1| putative membrane protein [alpha proteobacterium HIMB114] gb|EEY74503.1| putative membrane protein [alpha proteobacterium HIMB114] Length = 257 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 130/245 (53%) Query: 7 FADISLLQILLVAAVALFASVIGGLAGYGTGALMPLVLVPMVGAEPVVPIIAISSIFTNS 66 F + ++ ++ A FASV+ G++GYG G + L++ P + + +VP++++ +F+N Sbjct: 11 FVSLGFFELSILILTAYFASVVSGISGYGGGMTLGLLVSPFIPIKLLVPLMSVFVLFSNF 70 Query: 67 SRFVAFVRFADRRKAIIVIAAALFSTALGAYGYTRLTSAGASLVIGGMLILSVPLRRLLR 126 SR + + +K I A + G Y ++ +G L V LRR+ + Sbjct: 71 SRMYYYRKNIFWKKGIYFAAISTPFLIAGTNFYAAVSPKTLYFCLGFGLAFIVILRRVFK 130 Query: 127 KHRVRIGERGLAVGAVGYGVVVGGTAGSGVILLSLLMAAGLEGAAVVATDAVISLTSAAV 186 K + IG GL V AV YG + G G G +LL+ L A G+ GA ++ TD+ I+L + + Sbjct: 131 KINLNIGWFGLGVMAVFYGTISGVILGPGSVLLTALAANGMVGAQIIGTDSFITLINVII 190 Query: 187 KISVFGLTGVITAQVLALALLIGLVAIPGAFLAKAFVARMPVHIHTAILDAAVVTGGVVM 246 ++ F G++ L + +IG+VAI G++ AK ++ V +HT I++ V+ GG M Sbjct: 191 RLISFWNLGLLNLDALYIGSMIGIVAIFGSYTAKKIADKLGVKLHTIIIEVCVILGGAAM 250 Query: 247 IASAL 251 I A Sbjct: 251 IYRAF 255 >ref|YP_001205310.1| hypothetical protein BRADO3283 [Bradyrhizobium sp. ORS 278] emb|CAL77079.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 254 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 118/243 (48%) Query: 8 ADISLLQILLVAAVALFASVIGGLAGYGTGALMPLVLVPMVGAEPVVPIIAISSIFTNSS 67 A+ +L L V AV L A + G+ G G+ ++ VLV G + VPI+A++++ N S Sbjct: 9 AEDDILSFLFVLAVGLVAGTLSGIVGTGSSIMLMPVLVYEYGPKEAVPIMAVAAVMANLS 68 Query: 68 RFVAFVRFADRRKAIIVIAAALFSTALGAYGYTRLTSAGASLVIGGMLILSVPLRRLLRK 127 R +A+ R D R + + ALGA L S + IG L+ VP+R L + Sbjct: 69 RILAWWREVDWRACAAYSVTGIPAAALGARTLLILPSRAVDIAIGLFLMAMVPVRHWLAR 128 Query: 128 HRVRIGERGLAVGAVGYGVVVGGTAGSGVILLSLLMAAGLEGAAVVATDAVISLTSAAVK 187 H ++ LA+G G + G +G + + L + GL A +AT+A SL K Sbjct: 129 HEIKANLWHLALGGAVIGFLTGIVVSTGPLSVPLFLFYGLSKGAFLATEAASSLGLYVSK 188 Query: 188 ISVFGLTGVITAQVLALALLIGLVAIPGAFLAKAFVARMPVHIHTAILDAAVVTGGVVMI 247 F G +T +L L+ G + GAF+AK FV M + ++D ++ G+ M+ Sbjct: 189 SITFQRFGALTPDILFKGLIAGGSLMAGAFVAKRFVLHMKPDVFRLVMDGIMLAAGLSML 248 Query: 248 ASA 250 +A Sbjct: 249 WNA 251