BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0095.0016.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769121.1| coproporphyrinogen III oxidase [Bradyrhizobium ... 550 e-154 ref|ZP_01045264.1| coproporphyrinogen III oxidase [Nitrobacter s... 523 e-146 ref|YP_578441.1| coproporphyrinogen III oxidase [Nitrobacter ham... 521 e-146 ref|YP_319226.1| coproporphyrinogen III oxidase [Nitrobacter win... 520 e-145 ref|ZP_07027835.1| Coproporphyrinogen oxidase [Afipia sp. 1NLS2]... 492 e-137 >ref|NP_769121.1| coproporphyrinogen III oxidase [Bradyrhizobium japonicum USDA 110] sp|Q89SC2.1|HEM6_BRAJA RecName: Full=Coproporphyrinogen-III oxidase, aerobic; Short=Coprogen oxidase; Short=Coproporphyrinogenase dbj|BAC47746.1| coproporphyrinogen III oxidase [Bradyrhizobium japonicum USDA 110] Length = 316 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 259/297 (87%), Positives = 278/297 (93%) Query: 2 LPTDPAIIEDRKARARGWFEALRNDICAAFEKLEDDAPSRLYPGAAGRFVRTPWDRTDHT 61 L D + IEDRK RAR WFEALR+DICA+FE+LEDDAP LYPG AGRF RTPW RTDH+ Sbjct: 20 LNMDVSTIEDRKTRARAWFEALRDDICASFERLEDDAPQGLYPGEAGRFTRTPWQRTDHS 79 Query: 62 GKPGGGGVMSIMKGRLFEKVGVHCSTVHGEFAPEFRAQIPGAADDPRFWASGISLIAHLR 121 G GGGGVMS+M GRLFEKVGVHCSTVHGEFAPEFRAQIPGAADDPRFWASGISLIAHLR Sbjct: 80 GAAGGGGVMSMMSGRLFEKVGVHCSTVHGEFAPEFRAQIPGAADDPRFWASGISLIAHLR 139 Query: 122 NPNVPAVHMNTRFVVTTKAWFGGGADLTPVLNRRRTQEDPDTVAFHAAMKEACSGPNGVA 181 NP+VPAVHMNTRFVVTTKAWFGGGADLTPVL+RRRTQ+D D++AFHAAMKEAC PNGVA Sbjct: 140 NPHVPAVHMNTRFVVTTKAWFGGGADLTPVLDRRRTQDDADSIAFHAAMKEACVQPNGVA 199 Query: 182 DYDKYKKWCDDYFYLPHRKEARGIGGIFYDWHDSGDWEADLAFTQDVGRSFLKIYPDLVR 241 DYDKYKKWCD+YFYLPHRKEARGIGGIFYDWHDSGDW+ADLAFTQDVGR+FLKIYPD+VR Sbjct: 200 DYDKYKKWCDEYFYLPHRKEARGIGGIFYDWHDSGDWDADLAFTQDVGRAFLKIYPDIVR 259 Query: 242 RNFEAAWSAEDRDEQLVRRGRYVEFNLLYDRGTIFGLKTGGNVDSILSSLPPEVKWP 298 RNF +AW+A DR+EQL+RRGRYVEFNLLYDRGTIFGLKTGGNVDSILSSLPPEVKWP Sbjct: 260 RNFASAWTAADREEQLIRRGRYVEFNLLYDRGTIFGLKTGGNVDSILSSLPPEVKWP 316 >ref|ZP_01045264.1| coproporphyrinogen III oxidase [Nitrobacter sp. Nb-311A] gb|EAQ36592.1| coproporphyrinogen III oxidase [Nitrobacter sp. Nb-311A] Length = 295 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 239/294 (81%), Positives = 269/294 (91%) Query: 5 DPAIIEDRKARARGWFEALRNDICAAFEKLEDDAPSRLYPGAAGRFVRTPWDRTDHTGKP 64 D +++++ K RAR WFE LR+DIC+AFEKLEDDAP+ LYPG+AGRFVRTPW+RTDHTG+P Sbjct: 2 DASLLDNHKTRARSWFEQLRDDICSAFEKLEDDAPASLYPGSAGRFVRTPWERTDHTGQP 61 Query: 65 GGGGVMSIMKGRLFEKVGVHCSTVHGEFAPEFRAQIPGAADDPRFWASGISLIAHLRNPN 124 GGGGVMS+M GRLFEKVGVHCSTVHGEFAPEFRAQIPGAADDP FWASGISLIAH+RNP+ Sbjct: 62 GGGGVMSMMHGRLFEKVGVHCSTVHGEFAPEFRAQIPGAADDPNFWASGISLIAHMRNPH 121 Query: 125 VPAVHMNTRFVVTTKAWFGGGADLTPVLNRRRTQEDPDTVAFHAAMKEACSGPNGVADYD 184 +PAVHMNTRFVVTTKAWFGGG DLTPVL RRRTQEDPD+VAFHAAMK AC +A YD Sbjct: 122 IPAVHMNTRFVVTTKAWFGGGGDLTPVLMRRRTQEDPDSVAFHAAMKSACDAHAAIAPYD 181 Query: 185 KYKKWCDDYFYLPHRKEARGIGGIFYDWHDSGDWEADLAFTQDVGRSFLKIYPDLVRRNF 244 KYK WCD+YFYLPHRKEARGIGGIFYDWHDSGDW+ADLAFTQDVGR+ L++YP++VR NF Sbjct: 182 KYKTWCDEYFYLPHRKEARGIGGIFYDWHDSGDWDADLAFTQDVGRALLRVYPEIVRSNF 241 Query: 245 EAAWSAEDRDEQLVRRGRYVEFNLLYDRGTIFGLKTGGNVDSILSSLPPEVKWP 298 W+A DR+EQ++RRGRY EFNLLYDRGTIFGLKTGGNV+SILSS+PPEVKWP Sbjct: 242 NTPWTAADREEQVIRRGRYAEFNLLYDRGTIFGLKTGGNVESILSSMPPEVKWP 295 >ref|YP_578441.1| coproporphyrinogen III oxidase [Nitrobacter hamburgensis X14] gb|ABE63981.1| coproporphyrinogen oxidase [Nitrobacter hamburgensis X14] Length = 295 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 241/294 (81%), Positives = 266/294 (90%) Query: 5 DPAIIEDRKARARGWFEALRNDICAAFEKLEDDAPSRLYPGAAGRFVRTPWDRTDHTGKP 64 + A +D K RAR WFE LR+DICAAFEKLEDDAP+ LYPG+AGRFVRTPW+RTDHTG+P Sbjct: 2 EAASYDDHKTRARAWFEQLRDDICAAFEKLEDDAPASLYPGSAGRFVRTPWERTDHTGQP 61 Query: 65 GGGGVMSIMKGRLFEKVGVHCSTVHGEFAPEFRAQIPGAADDPRFWASGISLIAHLRNPN 124 GGGGVMS+M GRLFEKVGVHCSTVHGEFAPEFRAQIPGA DP+FWASGISLIAH+RNP+ Sbjct: 62 GGGGVMSMMHGRLFEKVGVHCSTVHGEFAPEFRAQIPGAEADPKFWASGISLIAHMRNPH 121 Query: 125 VPAVHMNTRFVVTTKAWFGGGADLTPVLNRRRTQEDPDTVAFHAAMKEACSGPNGVADYD 184 +PAVHMNTRFVVTTKAWFGGG DLTPVL RRRTQED D+VAFHAAMK AC +ADYD Sbjct: 122 IPAVHMNTRFVVTTKAWFGGGGDLTPVLMRRRTQEDADSVAFHAAMKSACDAHAAIADYD 181 Query: 185 KYKKWCDDYFYLPHRKEARGIGGIFYDWHDSGDWEADLAFTQDVGRSFLKIYPDLVRRNF 244 KYK WCD+YF+LPHR EARGIGGIFYDWHDSGDW+ADLAFTQDVGR+ LK+YP+LVRRNF Sbjct: 182 KYKTWCDEYFHLPHRNEARGIGGIFYDWHDSGDWDADLAFTQDVGRALLKVYPELVRRNF 241 Query: 245 EAAWSAEDRDEQLVRRGRYVEFNLLYDRGTIFGLKTGGNVDSILSSLPPEVKWP 298 W+A DR+EQL+RRGRY EFNLLYDRGTIFGLKTGGNV+SILSS+PPEVKWP Sbjct: 242 NTPWTAADREEQLIRRGRYAEFNLLYDRGTIFGLKTGGNVESILSSMPPEVKWP 295 >ref|YP_319226.1| coproporphyrinogen III oxidase [Nitrobacter winogradskyi Nb-255] gb|ABA05874.1| coproporphyrinogen oxidase [Nitrobacter winogradskyi Nb-255] Length = 300 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 246/290 (84%), Positives = 268/290 (92%) Query: 9 IEDRKARARGWFEALRNDICAAFEKLEDDAPSRLYPGAAGRFVRTPWDRTDHTGKPGGGG 68 +EDRKARAR WFE LR+DIC+AFEKLEDDAP+ LYPG+AGRFVRTPW+RTDHTGKPGGGG Sbjct: 11 LEDRKARARSWFEQLRDDICSAFEKLEDDAPASLYPGSAGRFVRTPWERTDHTGKPGGGG 70 Query: 69 VMSIMKGRLFEKVGVHCSTVHGEFAPEFRAQIPGAADDPRFWASGISLIAHLRNPNVPAV 128 VMS+M GRLFEKVGVHCSTVHGEFAPEFRAQIPGAADDP FWASGISLIAH+RNP++PAV Sbjct: 71 VMSMMHGRLFEKVGVHCSTVHGEFAPEFRAQIPGAADDPNFWASGISLIAHMRNPHIPAV 130 Query: 129 HMNTRFVVTTKAWFGGGADLTPVLNRRRTQEDPDTVAFHAAMKEACSGPNGVADYDKYKK 188 HMNTRFVVTTKAWFGGG DLTPVL RRRTQEDPD+VAFHAAMK AC +A YDKYK Sbjct: 131 HMNTRFVVTTKAWFGGGGDLTPVLMRRRTQEDPDSVAFHAAMKAACDAHAAIAPYDKYKT 190 Query: 189 WCDDYFYLPHRKEARGIGGIFYDWHDSGDWEADLAFTQDVGRSFLKIYPDLVRRNFEAAW 248 WCD+YF+LPHRKEARGIGGIFYDWHDSGDW ADLAFTQDVGR+ LK+YP+LVRRNF W Sbjct: 191 WCDEYFHLPHRKEARGIGGIFYDWHDSGDWNADLAFTQDVGRALLKVYPELVRRNFSTPW 250 Query: 249 SAEDRDEQLVRRGRYVEFNLLYDRGTIFGLKTGGNVDSILSSLPPEVKWP 298 +A DR+EQL+RRGRY EFNLLYDRGTIFGLKTGGNV+SILSS+PPEVKWP Sbjct: 251 TAADREEQLIRRGRYAEFNLLYDRGTIFGLKTGGNVESILSSMPPEVKWP 300 >ref|ZP_07027835.1| Coproporphyrinogen oxidase [Afipia sp. 1NLS2] gb|EFI50656.1| Coproporphyrinogen oxidase [Afipia sp. 1NLS2] Length = 295 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 231/294 (78%), Positives = 257/294 (87%) Query: 5 DPAIIEDRKARARGWFEALRNDICAAFEKLEDDAPSRLYPGAAGRFVRTPWDRTDHTGKP 64 D ++++ RK AR WFE LR+DICA+FE+LED+ P+ LY AGRFVR PW+RTDHTG P Sbjct: 2 DASLLDSRKTSARAWFEKLRDDICASFEQLEDEVPASLYGDQAGRFVRKPWERTDHTGAP 61 Query: 65 GGGGVMSIMKGRLFEKVGVHCSTVHGEFAPEFRAQIPGAADDPRFWASGISLIAHLRNPN 124 GGGGVMS+M+GRLFEKVGVHCSTV GEFAPEFRAQIPGA+DDPRFWASGISLIAH NPN Sbjct: 62 GGGGVMSMMRGRLFEKVGVHCSTVFGEFAPEFRAQIPGASDDPRFWASGISLIAHPWNPN 121 Query: 125 VPAVHMNTRFVVTTKAWFGGGADLTPVLNRRRTQEDPDTVAFHAAMKEACSGPNGVADYD 184 VPAVHMNTRFVVTTK WFGGGADLTPVL+RRRTQEDPDTV+FH A ++AC VA YD Sbjct: 122 VPAVHMNTRFVVTTKRWFGGGADLTPVLDRRRTQEDPDTVSFHEAFRKACHAHTAVAPYD 181 Query: 185 KYKKWCDDYFYLPHRKEARGIGGIFYDWHDSGDWEADLAFTQDVGRSFLKIYPDLVRRNF 244 K+KKWCDDYF+L HRKE RGIGGIFYDW +SGDW AD AFTQDVGR+F IYP+LVRRNF Sbjct: 182 KFKKWCDDYFFLAHRKEPRGIGGIFYDWLESGDWNADFAFTQDVGRAFAAIYPELVRRNF 241 Query: 245 EAAWSAEDRDEQLVRRGRYVEFNLLYDRGTIFGLKTGGNVDSILSSLPPEVKWP 298 E W DR+EQL+RRGRYVEFNLLYDRGTIFGLKTGGNV+SILSS+PPEVKWP Sbjct: 242 ETPWQDADREEQLIRRGRYVEFNLLYDRGTIFGLKTGGNVESILSSMPPEVKWP 295