BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0095.0014.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628637.1| queuosine Biosynthesis QueE [Bradyrhizobiacea... 357 9e-97 ref|NP_769123.1| hypothetical protein bll2483 [Bradyrhizobium ja... 353 7e-96 ref|YP_319224.1| hypothetical protein Nwi_2619 [Nitrobacter wino... 348 2e-94 ref|YP_578438.1| hypothetical protein Nham_3243 [Nitrobacter ham... 343 9e-93 ref|YP_002289971.1| radical SAM [Oligotropha carboxidovorans OM5... 341 4e-92 >ref|ZP_08628637.1| queuosine Biosynthesis QueE [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08702.1| queuosine Biosynthesis QueE [Bradyrhizobiaceae bacterium SG-6C] Length = 210 Score = 357 bits (915), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 168/210 (80%), Positives = 182/210 (86%) Query: 1 VSYAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGREQDRAGAVCKFCDTDFVGTDGTL 60 +SYAVKEIFLTLQGEGAHAGR +VFCRF+GCNLW+GREQDR AVCKFCDTDFVG DGTL Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRTAVFCRFSGCNLWTGREQDRPEAVCKFCDTDFVGMDGTL 60 Query: 61 GGRYATAEELAGAIAAQWTGGEADRYVVLTGGEPLLHVHPALIDALHGHGFAIAIETNGT 120 GGRYA A++LA IAAQW G RY VLTGGEPLL V PALIDALH GF IA+ETNGT Sbjct: 61 GGRYANADDLAAVIAAQWEGPPEHRYTVLTGGEPLLQVDPALIDALHARGFTIAVETNGT 120 Query: 121 IAPPDGLDWICVSPKATAELVVRKGHELKLVYPQMENTPEDFAGLAFERFSLQPMDGPDV 180 +A P GLDWICVSPKA AEL++RKGHELKLVYPQ EN PEDFAGL FERFSLQPMDGPD+ Sbjct: 121 VAAPPGLDWICVSPKAGAELILRKGHELKLVYPQPENKPEDFAGLEFERFSLQPMDGPDI 180 Query: 181 MENTERAIAYCLKHPQWHLSVQTHKTLGIR 210 ++T+ AIAYCL HPQW LSVQTHKTLGIR Sbjct: 181 AQSTQAAIAYCLAHPQWRLSVQTHKTLGIR 210 >ref|NP_769123.1| hypothetical protein bll2483 [Bradyrhizobium japonicum USDA 110] dbj|BAC47748.1| bll2483 [Bradyrhizobium japonicum USDA 110] Length = 210 Score = 353 bits (907), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 169/210 (80%), Positives = 179/210 (85%) Query: 1 VSYAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGREQDRAGAVCKFCDTDFVGTDGTL 60 +SYAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGRE DR A CKFCDTDFVGTDGTL Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGREADRQDATCKFCDTDFVGTDGTL 60 Query: 61 GGRYATAEELAGAIAAQWTGGEADRYVVLTGGEPLLHVHPALIDALHGHGFAIAIETNGT 120 GGRYA+A ELA IAAQWT +RYVVLTGGEPLL V ALIDALH GF I +ETNGT Sbjct: 61 GGRYASAVELADTIAAQWTASNDNRYVVLTGGEPLLQVDDALIDALHARGFEIGVETNGT 120 Query: 121 IAPPDGLDWICVSPKATAELVVRKGHELKLVYPQMENTPEDFAGLAFERFSLQPMDGPDV 180 IA PDGLDWICVSPK +ELV+R+GHELKLVYPQ PE F GLAFERFSLQPMDGP+V Sbjct: 121 IAAPDGLDWICVSPKGGSELVLRRGHELKLVYPQALAAPETFEGLAFERFSLQPMDGPEV 180 Query: 181 MENTERAIAYCLKHPQWHLSVQTHKTLGIR 210 ENT RAI YCL+HPQW LSVQTHK+LGIR Sbjct: 181 AENTARAIDYCLRHPQWRLSVQTHKSLGIR 210 >ref|YP_319224.1| hypothetical protein Nwi_2619 [Nitrobacter winogradskyi Nb-255] gb|ABA05872.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 210 Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 160/210 (76%), Positives = 180/210 (85%) Query: 1 VSYAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGREQDRAGAVCKFCDTDFVGTDGTL 60 +SYAVKEIFLTLQGEGAHAGRA+VFCRF+GCNLWSGRE+DRA A C+FCDTDFVGTDGTL Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRAAVFCRFSGCNLWSGREEDRASATCRFCDTDFVGTDGTL 60 Query: 61 GGRYATAEELAGAIAAQWTGGEADRYVVLTGGEPLLHVHPALIDALHGHGFAIAIETNGT 120 GGRYA+A+ LA +A QW G A RY VLTGGEPLL V A +DALH GF I IETNGT Sbjct: 61 GGRYASADALADTVAGQWAGPAAHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGT 120 Query: 121 IAPPDGLDWICVSPKATAELVVRKGHELKLVYPQMENTPEDFAGLAFERFSLQPMDGPDV 180 +APPDG+DW+CVSPKA A+L +R+GHELKLVYPQ + PEDFA LAF+RFSLQPMDGPD Sbjct: 121 LAPPDGIDWLCVSPKAGADLRIRRGHELKLVYPQADARPEDFADLAFDRFSLQPMDGPDA 180 Query: 181 MENTERAIAYCLKHPQWHLSVQTHKTLGIR 210 ENT RA+ YCL+HPQW LS+QTHKTLGIR Sbjct: 181 AENTARAVDYCLRHPQWRLSLQTHKTLGIR 210 >ref|YP_578438.1| hypothetical protein Nham_3243 [Nitrobacter hamburgensis X14] gb|ABE63978.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 210 Score = 343 bits (880), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 160/210 (76%), Positives = 175/210 (83%) Query: 1 VSYAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGREQDRAGAVCKFCDTDFVGTDGTL 60 +SYAVKEIFLTLQGEGAHAGRA+VFCRFAGCNLWSGRE+DR A+C+FCDTDFVG DGT Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRAAVFCRFAGCNLWSGREEDRTSAICRFCDTDFVGMDGTR 60 Query: 61 GGRYATAEELAGAIAAQWTGGEADRYVVLTGGEPLLHVHPALIDALHGHGFAIAIETNGT 120 GGRYA A+ELA +AAQWTG RY VLTGGEPLL V A +DALH GF I IETNGT Sbjct: 61 GGRYAAADELADTVAAQWTGSAPHRYAVLTGGEPLLQVDKAFVDALHARGFEIGIETNGT 120 Query: 121 IAPPDGLDWICVSPKATAELVVRKGHELKLVYPQMENTPEDFAGLAFERFSLQPMDGPDV 180 I PPDG+DW+CVSPKA A+L V KGHELKLVYPQ PEDF LAFERFSLQPMDGPD Sbjct: 121 IVPPDGIDWLCVSPKAGADLRVTKGHELKLVYPQAGARPEDFKDLAFERFSLQPMDGPDA 180 Query: 181 MENTERAIAYCLKHPQWHLSVQTHKTLGIR 210 +NT RAI YC++HPQW LS+QTHKTLGIR Sbjct: 181 ADNTARAIDYCMRHPQWRLSLQTHKTLGIR 210 >ref|YP_002289971.1| radical SAM [Oligotropha carboxidovorans OM5] ref|YP_004632052.1| hypothetical protein OCA5_c10920 [Oligotropha carboxidovorans OM5] gb|ACI94106.1| radical SAM [Oligotropha carboxidovorans OM5] gb|AEI02235.1| hypothetical protein OCA4_c10920 [Oligotropha carboxidovorans OM4] gb|AEI05811.1| hypothetical protein OCA5_c10920 [Oligotropha carboxidovorans OM5] Length = 210 Score = 341 bits (874), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 160/210 (76%), Positives = 177/210 (84%) Query: 1 VSYAVKEIFLTLQGEGAHAGRASVFCRFAGCNLWSGREQDRAGAVCKFCDTDFVGTDGTL 60 +SYAVKEIFLTLQGEGAHAGR +VFCRFAGCNLW+GREQDRA A C+FCDTDFVGTDGTL Sbjct: 1 MSYAVKEIFLTLQGEGAHAGRTAVFCRFAGCNLWTGREQDRADATCRFCDTDFVGTDGTL 60 Query: 61 GGRYATAEELAGAIAAQWTGGEADRYVVLTGGEPLLHVHPALIDALHGHGFAIAIETNGT 120 GGRYATA+ LA IAA W G R+VVLTGGEPLL + LI+ALH F IA+ETNGT Sbjct: 61 GGRYATADALADQIAATWGEGTTHRFVVLTGGEPLLQIDVELIEALHARHFMIAVETNGT 120 Query: 121 IAPPDGLDWICVSPKATAELVVRKGHELKLVYPQMENTPEDFAGLAFERFSLQPMDGPDV 180 + P GLDWICVSPKA EL +R+GHELKLVYPQ ENTPED+A LAF FSLQPMDGPD+ Sbjct: 121 LPAPPGLDWICVSPKADTELAIRQGHELKLVYPQAENTPEDYAALAFAHFSLQPMDGPDL 180 Query: 181 MENTERAIAYCLKHPQWHLSVQTHKTLGIR 210 +NTERAI YCL+HPQW LSVQTHKT+GIR Sbjct: 181 AQNTERAIDYCLRHPQWRLSVQTHKTIGIR 210