BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0013.p         (161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769124.1| tRNA/rRNA methyltransferase [Bradyrhizobium jap...   239   7e-62
ref|YP_530812.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomo...   239   8e-62
ref|YP_779883.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomo...   238   2e-61
ref|YP_484820.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudo...   225   2e-57
ref|YP_001238381.1| putative tRNA/rRNA methyltransferase [Bradyr...   225   2e-57

>ref|NP_769124.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47749.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 152

 Score =  239 bits (611), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 114/146 (78%), Positives = 125/146 (85%)

Query: 1   MQIALFQPDIPQNTGTILRLCACLDVSAHIIEPAGFDTSDRNFRRAGMDYLDHVRLKRHD 60
           MQIALFQPDIPQNTGTILRLCACL ++AHIIEPAGF  SDR+FRRAGMDYLD V + RH 
Sbjct: 1   MQIALFQPDIPQNTGTILRLCACLGLAAHIIEPAGFPVSDRHFRRAGMDYLDQVSITRHV 60

Query: 61  SWSKFEEWRAEAGCRLVLFTTRAAKSYLDFAYTASDVLLFGRETAGVTDAVVAAADARLA 120
           SW +FEEWRA  GCRL+LFTT+AA  Y DF Y  SD+LLFGRE+AGVTDAVV AADARL 
Sbjct: 61  SWPQFEEWRAAQGCRLLLFTTKAATDYRDFRYQTSDILLFGRESAGVTDAVVEAADARLV 120

Query: 121 IPIRPTMRSLNVAVTAAMAVGEALRQ 146
           IPI P +RSLNVA+TAAMA GEALRQ
Sbjct: 121 IPIAPGLRSLNVAMTAAMAAGEALRQ 146


>ref|YP_530812.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomonas palustris
           BisB18]
 gb|ABD86493.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB18]
          Length = 162

 Score =  239 bits (611), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 111/155 (71%), Positives = 127/155 (81%)

Query: 1   MQIALFQPDIPQNTGTILRLCACLDVSAHIIEPAGFDTSDRNFRRAGMDYLDHVRLKRHD 60
           M+IALFQPDIPQNTGTILRLCACL+V AHIIEPAGF  SDR+FRRAGMDYLD V + RHD
Sbjct: 7   MRIALFQPDIPQNTGTILRLCACLNVEAHIIEPAGFPVSDRHFRRAGMDYLDQVTIMRHD 66

Query: 61  SWSKFEEWRAEAGCRLVLFTTRAAKSYLDFAYTASDVLLFGRETAGVTDAVVAAADARLA 120
            WSKFE+WRA AGCRLVL TT+    YLD+ Y+A DVLL GRE+AGV D V A ADARL 
Sbjct: 67  CWSKFEQWRAAAGCRLVLLTTKGLTPYLDYRYSARDVLLLGRESAGVPDDVAAVADARLV 126

Query: 121 IPIRPTMRSLNVAVTAAMAVGEALRQTGSGNAGSE 155
           IP++P +RSLNVA+ AAM +GEALRQTGS +   +
Sbjct: 127 IPVQPGLRSLNVAMAAAMVLGEALRQTGSNSEAPQ 161


>ref|YP_779883.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomonas palustris
           BisA53]
 gb|ABJ04903.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisA53]
          Length = 153

 Score =  238 bits (607), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 123/147 (83%)

Query: 1   MQIALFQPDIPQNTGTILRLCACLDVSAHIIEPAGFDTSDRNFRRAGMDYLDHVRLKRHD 60
           M+IALFQPDIPQNTGTILRLCACLDV AHIIEPAGF  SDRNFRRAGMDYLD V L RHD
Sbjct: 1   MRIALFQPDIPQNTGTILRLCACLDVEAHIIEPAGFPVSDRNFRRAGMDYLDQVSLTRHD 60

Query: 61  SWSKFEEWRAEAGCRLVLFTTRAAKSYLDFAYTASDVLLFGRETAGVTDAVVAAADARLA 120
           SW+KFE+WR + GCRL+L TT+   SY ++ Y  SDVL+ GRE+AGV D V A ADARLA
Sbjct: 61  SWTKFEQWRRDQGCRLILLTTKGLISYFEYRYAPSDVLMLGRESAGVPDEVAAVADARLA 120

Query: 121 IPIRPTMRSLNVAVTAAMAVGEALRQT 147
           IP++P +RSLN+AV AAM VGEALRQT
Sbjct: 121 IPVKPGLRSLNIAVAAAMVVGEALRQT 147


>ref|YP_484820.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
 gb|ABD05909.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
          Length = 150

 Score =  225 bits (574), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 123/150 (82%)

Query: 1   MQIALFQPDIPQNTGTILRLCACLDVSAHIIEPAGFDTSDRNFRRAGMDYLDHVRLKRHD 60
           M+IAL+QPDIPQNTGT+LR CACL+V AHIIEPAGF TSDR+FRRAGMDYLD + + RHD
Sbjct: 1   MRIALYQPDIPQNTGTLLRFCACLNVEAHIIEPAGFPTSDRHFRRAGMDYLDQITIVRHD 60

Query: 61  SWSKFEEWRAEAGCRLVLFTTRAAKSYLDFAYTASDVLLFGRETAGVTDAVVAAADARLA 120
           SWSKFE+WR +A CR++L TT+    YL+  Y ++DVLL GRE+AGV D V AAADAR+ 
Sbjct: 61  SWSKFEQWRKDADCRVILLTTKGVTPYLEQRYQSTDVLLLGRESAGVPDEVAAAADARIV 120

Query: 121 IPIRPTMRSLNVAVTAAMAVGEALRQTGSG 150
           IP++P  RSLNVA+ AA+ VGEALRQT  G
Sbjct: 121 IPMQPGFRSLNVAMAAALVVGEALRQTRQG 150


>ref|YP_001238381.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
 gb|ABQ34475.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 158

 Score =  225 bits (573), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/148 (74%), Positives = 124/148 (83%)

Query: 1   MQIALFQPDIPQNTGTILRLCACLDVSAHIIEPAGFDTSDRNFRRAGMDYLDHVRLKRHD 60
           MQIAL+QPDIPQNTGTILRLCACL ++AHIIEPAGF  SDR FRRAGMDYLDH+  +RHD
Sbjct: 1   MQIALYQPDIPQNTGTILRLCACLGLAAHIIEPAGFAVSDRQFRRAGMDYLDHLAWRRHD 60

Query: 61  SWSKFEEWRAEAGCRLVLFTTRAAKSYLDFAYTASDVLLFGRETAGVTDAVVAAADARLA 120
           SWS FE+WRA  G RL+LFTT+AA SYLDF+Y A D+LL GRE+AGV D V   ADARL 
Sbjct: 61  SWSAFEDWRAAQGHRLLLFTTKAATSYLDFSYKADDILLLGRESAGVPDTVAEVADARLR 120

Query: 121 IPIRPTMRSLNVAVTAAMAVGEALRQTG 148
           IP+RP +RSLNVA+ AAMA GEALRQ G
Sbjct: 121 IPLRPGLRSLNVAMAAAMAAGEALRQVG 148