BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0095.0005.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769132.1| hypothetical protein bll2492 [Bradyrhizobium ja... 468 e-130 ref|YP_487913.1| hypothetical protein RPB_4315 [Rhodopseudomonas... 457 e-127 ref|YP_571328.1| hypothetical protein RPD_4210 [Rhodopseudomonas... 457 e-127 ref|NP_949830.1| hypothetical protein RPA4494 [Rhodopseudomonas ... 456 e-126 ref|YP_783342.1| hypothetical protein RPE_4438 [Rhodopseudomonas... 453 e-125 >ref|NP_769132.1| hypothetical protein bll2492 [Bradyrhizobium japonicum USDA 110] dbj|BAC47757.1| bll2492 [Bradyrhizobium japonicum USDA 110] Length = 250 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 225/242 (92%), Positives = 236/242 (97%), Gaps = 1/242 (0%) Query: 1 MAKPVVIVVGADKGGVGKTTVSRTLLDYFSANNVQTRAFDTESPRGTLKRFHPDITEIVD 60 MAKP V+VVGADKGGVGKTTVSRTLLDYFSANNV TRAFDTESPRGTLKRFHP ITEIVD Sbjct: 1 MAKPAVVVVGADKGGVGKTTVSRTLLDYFSANNVPTRAFDTESPRGTLKRFHPGITEIVD 60 Query: 61 MTTTADQMKIFDTLN-SGPSVTVIDVRAGLLSPALASLRDIGFLDAARSGQITFAVFHIL 119 MTTTADQMKIFDTLN + PSVTVIDVRAGLLSPALASLRDIGFLDAA++GQITFAVFHIL Sbjct: 61 MTTTADQMKIFDTLNATSPSVTVIDVRAGLLSPALASLRDIGFLDAAKAGQITFAVFHIL 120 Query: 120 GPSIASLDEIAETANFMSGAKYFLVKNFINDTQFFQWDQATYNSYFHRIKDAVDLTIPKL 179 GPSIASLDEIAETANFM+GAKYFLVKNFINDTQFFQWDQATYNSYFHRIKDA +LTIPKL Sbjct: 121 GPSIASLDEIAETANFMTGAKYFLVKNFINDTQFFQWDQATYNSYFHRIKDATELTIPKL 180 Query: 180 NEMAYEQVEVSSVPFLKFVANKGINDDAANYSFVLRGYVRHWLANVWSEYDRIKLTDLVG 239 NEMAYEQVEVSSVPFLKFVANKGIND+AANYSFVLRGYVRHWLANVWSE+DRI+LTD+VG Sbjct: 181 NEMAYEQVEVSSVPFLKFVANKGINDEAANYSFVLRGYVRHWLANVWSEFDRIRLTDIVG 240 Query: 240 AK 241 +K Sbjct: 241 SK 242 >ref|YP_487913.1| hypothetical protein RPB_4315 [Rhodopseudomonas palustris HaA2] gb|ABD09002.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 256 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/240 (92%), Positives = 230/240 (95%), Gaps = 1/240 (0%) Query: 1 MAKPVVIVVGADKGGVGKTTVSRTLLDYFSANNVQTRAFDTESPRGTLKRFHPDITEIVD 60 MAKP VIVVGADKGGVGKTTVSRTLLDYFSANN+ TRAFDTESPRGTLKRFHP ITEIVD Sbjct: 1 MAKPAVIVVGADKGGVGKTTVSRTLLDYFSANNIPTRAFDTESPRGTLKRFHPGITEIVD 60 Query: 61 MTTTADQMKIFDTLNSG-PSVTVIDVRAGLLSPALASLRDIGFLDAARSGQITFAVFHIL 119 MTTTADQMKIFDTLN+ PSVTVIDVRAGLLSPALASLRDIGFLDAARSGQITFAVFHIL Sbjct: 61 MTTTADQMKIFDTLNTATPSVTVIDVRAGLLSPALASLRDIGFLDAARSGQITFAVFHIL 120 Query: 120 GPSIASLDEIAETANFMSGAKYFLVKNFINDTQFFQWDQATYNSYFHRIKDAVDLTIPKL 179 GPSIASLDEIAETANFM GAKY+LVKNFIN+T FF+WDQATYNSYFHRIKDA +LTIPKL Sbjct: 121 GPSIASLDEIAETANFMIGAKYYLVKNFINNTSFFEWDQATYNSYFHRIKDATELTIPKL 180 Query: 180 NEMAYEQVEVSSVPFLKFVANKGINDDAANYSFVLRGYVRHWLANVWSEYDRIKLTDLVG 239 NEMAYEQVEVSSVPFLKFVANKG+ D+ ANYSFVLRGYVRHWLANVWSE+DRIKLTDLVG Sbjct: 181 NEMAYEQVEVSSVPFLKFVANKGVQDEPANYSFVLRGYVRHWLANVWSEFDRIKLTDLVG 240 >ref|YP_571328.1| hypothetical protein RPD_4210 [Rhodopseudomonas palustris BisB5] gb|ABE41427.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 257 Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/240 (92%), Positives = 230/240 (95%), Gaps = 1/240 (0%) Query: 1 MAKPVVIVVGADKGGVGKTTVSRTLLDYFSANNVQTRAFDTESPRGTLKRFHPDITEIVD 60 MAKP VIVVGADKGGVGKTTVSRTLLDYF+ANN+ TRAFDTESPRGTLKRFHP ITEIVD Sbjct: 1 MAKPAVIVVGADKGGVGKTTVSRTLLDYFNANNIPTRAFDTESPRGTLKRFHPGITEIVD 60 Query: 61 MTTTADQMKIFDTLNSG-PSVTVIDVRAGLLSPALASLRDIGFLDAARSGQITFAVFHIL 119 MTTTADQMKIFDTLN+ PSVTVIDVRAGLLSPALASLRDIGFLDAARSGQITFAVFHIL Sbjct: 61 MTTTADQMKIFDTLNTAAPSVTVIDVRAGLLSPALASLRDIGFLDAARSGQITFAVFHIL 120 Query: 120 GPSIASLDEIAETANFMSGAKYFLVKNFINDTQFFQWDQATYNSYFHRIKDAVDLTIPKL 179 GPSIASLDEIAETANFM GAKYFLVKNFIN+T FF+WDQATYNSYFHRIKDA +LTIPKL Sbjct: 121 GPSIASLDEIAETANFMIGAKYFLVKNFINNTSFFEWDQATYNSYFHRIKDATELTIPKL 180 Query: 180 NEMAYEQVEVSSVPFLKFVANKGINDDAANYSFVLRGYVRHWLANVWSEYDRIKLTDLVG 239 NEMAYEQVEVSSVPFLKFVANKG+ D+ ANYSFVLRGYVRHWLANVWSE+DRIKLTDLVG Sbjct: 181 NEMAYEQVEVSSVPFLKFVANKGVQDEPANYSFVLRGYVRHWLANVWSEFDRIKLTDLVG 240 >ref|NP_949830.1| hypothetical protein RPA4494 [Rhodopseudomonas palustris CGA009] ref|YP_001993951.1| hypothetical protein Rpal_4987 [Rhodopseudomonas palustris TIE-1] ref|YP_004110976.1| hypothetical protein Rpdx1_4696 [Rhodopseudomonas palustris DX-1] emb|CAE29935.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] gb|ACF03476.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] gb|ADU46243.1| hypothetical protein Rpdx1_4696 [Rhodopseudomonas palustris DX-1] Length = 257 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/247 (90%), Positives = 234/247 (94%), Gaps = 2/247 (0%) Query: 1 MAKPVVIVVGADKGGVGKTTVSRTLLDYFSANNVQTRAFDTESPRGTLKRFHPDITEIVD 60 MAKP VIVVGADKGGVGKTTVSRTLLDYFSANNV TRAFDTESPRGTLKRFHPDITEIVD Sbjct: 1 MAKPAVIVVGADKGGVGKTTVSRTLLDYFSANNVPTRAFDTESPRGTLKRFHPDITEIVD 60 Query: 61 MTTTADQMKIFDTLNSG-PSVTVIDVRAGLLSPALASLRDIGFLDAARSGQITFAVFHIL 119 MT+TADQMKIFDTLNS PSVTVIDVRAGLLSPALASLRDIGFLDAARSGQITFAVFHIL Sbjct: 61 MTSTADQMKIFDTLNSAVPSVTVIDVRAGLLSPALASLRDIGFLDAARSGQITFAVFHIL 120 Query: 120 GPSIASLDEIAETANFMSGAKYFLVKNFINDTQFFQWDQATYNSYFHRIKDAVDLTIPKL 179 GPSIASLDEIAETANFM GAKYFL KNFIN+T FF+WDQATYNSYFHRIKDA +LTIPKL Sbjct: 121 GPSIASLDEIAETANFMIGAKYFLTKNFINNTSFFEWDQATYNSYFHRIKDATELTIPKL 180 Query: 180 NEMAYEQVEVSSVPFLKFVANKGINDDAANYSFVLRGYVRHWLANVWSEYDRIKLTDLVG 239 NEMAYEQVEVSSVPFLKFVANKG++ + ANYSFVLRGYVRHWLANVWSE+DRIKLTD+VG Sbjct: 181 NEMAYEQVEVSSVPFLKFVANKGVSGEPANYSFVLRGYVRHWLANVWSEFDRIKLTDIVG 240 Query: 240 A-KSAKG 245 K+ +G Sbjct: 241 KDKNGRG 247 >ref|YP_783342.1| hypothetical protein RPE_4438 [Rhodopseudomonas palustris BisA53] gb|ABJ08362.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 272 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 220/244 (90%), Positives = 232/244 (95%), Gaps = 1/244 (0%) Query: 1 MAKPVVIVVGADKGGVGKTTVSRTLLDYFSANNVQTRAFDTESPRGTLKRFHPDITEIVD 60 MAKP VIVVGADKGGVGKTTVSRTLLDYFSANNV TRAFDTESPRGTLKRFHPDITEIVD Sbjct: 12 MAKPAVIVVGADKGGVGKTTVSRTLLDYFSANNVPTRAFDTESPRGTLKRFHPDITEIVD 71 Query: 61 MTTTADQMKIFDTLNS-GPSVTVIDVRAGLLSPALASLRDIGFLDAARSGQITFAVFHIL 119 MTTT+DQMKIFDTLNS PSVTVIDVRAGL+S ALA+LRDIGFLDAA+SGQITFAVFHIL Sbjct: 72 MTTTSDQMKIFDTLNSSAPSVTVIDVRAGLMSSALANLRDIGFLDAAQSGQITFAVFHIL 131 Query: 120 GPSIASLDEIAETANFMSGAKYFLVKNFINDTQFFQWDQATYNSYFHRIKDAVDLTIPKL 179 GPSIASLDEIAETA FM GAKYFLVKNFIN+T FF+WDQATYNSYFHRIKDA +LTIPKL Sbjct: 132 GPSIASLDEIAETAGFMHGAKYFLVKNFINNTSFFEWDQATYNSYFHRIKDATELTIPKL 191 Query: 180 NEMAYEQVEVSSVPFLKFVANKGINDDAANYSFVLRGYVRHWLANVWSEYDRIKLTDLVG 239 NEMAYEQVEVSSVPFLKFVANKG +D+AANYSFVLRGYVRHWLANVWSE+DRIKLTD+VG Sbjct: 192 NEMAYEQVEVSSVPFLKFVANKGTHDEAANYSFVLRGYVRHWLANVWSEFDRIKLTDIVG 251 Query: 240 AKSA 243 + A Sbjct: 252 KERA 255