BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0003.p         (186 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002289961.1| LemA [Oligotropha carboxidovorans OM5] >gi|3...   345   1e-93
ref|YP_001204092.1| putative signal peptide [Bradyrhizobium sp. ...   343   6e-93
ref|YP_001238394.1| hypothetical protein BBta_2315 [Bradyrhizobi...   342   1e-92
ref|YP_578428.1| hypothetical protein Nham_3233 [Nitrobacter ham...   340   5e-92
ref|NP_769134.1| hypothetical protein bll2494 [Bradyrhizobium ja...   338   2e-91

>ref|YP_002289961.1| LemA [Oligotropha carboxidovorans OM5]
 ref|YP_004632062.1| LemA family protein [Oligotropha carboxidovorans OM5]
 gb|ACI94096.1| LemA [Oligotropha carboxidovorans OM5]
 gb|AEI02245.1| LemA family protein [Oligotropha carboxidovorans OM4]
 gb|AEI05821.1| LemA family protein [Oligotropha carboxidovorans OM5]
          Length = 186

 Score =  345 bits (886), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/186 (89%), Positives = 176/186 (94%)

Query: 1   MSTSWIVIGVIVLLVLFAFGAYNRLVALSQRVGQAFADIDVQLKQRHDLIPNLVETVKGY 60
           MST WIV+GVI LLVLF F AYNRLVALSQRV QAFADIDVQLKQRHDLIPNLVETVKGY
Sbjct: 1   MSTGWIVLGVIALLVLFGFSAYNRLVALSQRVNQAFADIDVQLKQRHDLIPNLVETVKGY 60

Query: 61  AAHERGTLDDVIKARNSAMSAQGPAQVSAAENQLSGALGRLIALSEAYPDLKANANFQQL 120
           A+HERGTLDDV+KARN+A+SAQGPAQ+SAAE QLSGALGRLIALSEAYPDLKANANFQQL
Sbjct: 61  ASHERGTLDDVVKARNAALSAQGPAQISAAEAQLSGALGRLIALSEAYPDLKANANFQQL 120

Query: 121 ASELSDLENKIAASRRFFNNAVQEYNTGIQQMPAALFAGMFGFTRKDFFDLGASRTEVEA 180
            SELSD+ENKIAASRRFFNNAVQEYNTGIQQMPAALFAGMFGFTRKDFFDLG SR ++E 
Sbjct: 121 QSELSDIENKIAASRRFFNNAVQEYNTGIQQMPAALFAGMFGFTRKDFFDLGESRGQLEQ 180

Query: 181 APSVKF 186
           APSVKF
Sbjct: 181 APSVKF 186


>ref|YP_001204092.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL75855.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 185

 Score =  343 bits (881), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 166/184 (90%), Positives = 177/184 (96%)

Query: 3   TSWIVIGVIVLLVLFAFGAYNRLVALSQRVGQAFADIDVQLKQRHDLIPNLVETVKGYAA 62
           + WIV+G++V+LVLFAFGAYNRLVALSQRVGQAFADIDVQLK RHDLIPNLVETVKGYAA
Sbjct: 2   SGWIVLGILVILVLFAFGAYNRLVALSQRVGQAFADIDVQLKLRHDLIPNLVETVKGYAA 61

Query: 63  HERGTLDDVIKARNSAMSAQGPAQVSAAENQLSGALGRLIALSEAYPDLKANANFQQLAS 122
           HERGTLD+VIKARN+A+SAQGPAQVSAAE QLSGALGRLIALSEAYPDLKANANFQQLA 
Sbjct: 62  HERGTLDEVIKARNAAISAQGPAQVSAAEGQLSGALGRLIALSEAYPDLKANANFQQLAG 121

Query: 123 ELSDLENKIAASRRFFNNAVQEYNTGIQQMPAALFAGMFGFTRKDFFDLGASRTEVEAAP 182
           ELSD+ENKIAASRRFFNNAVQEYNTGIQQ+PAALFAG FGFTRK+FFDLG SR EVEAAP
Sbjct: 122 ELSDIENKIAASRRFFNNAVQEYNTGIQQLPAALFAGTFGFTRKEFFDLGTSRAEVEAAP 181

Query: 183 SVKF 186
           SVKF
Sbjct: 182 SVKF 185


>ref|YP_001238394.1| hypothetical protein BBta_2315 [Bradyrhizobium sp. BTAi1]
 gb|ABQ34488.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 185

 Score =  342 bits (878), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 164/184 (89%), Positives = 177/184 (96%)

Query: 3   TSWIVIGVIVLLVLFAFGAYNRLVALSQRVGQAFADIDVQLKQRHDLIPNLVETVKGYAA 62
           + WI++G++V+LVLFAF AYNRLVALSQRV QAFADIDVQLKQRHDLIPNLVETVKGYA+
Sbjct: 2   SGWIILGILVVLVLFAFSAYNRLVALSQRVSQAFADIDVQLKQRHDLIPNLVETVKGYAS 61

Query: 63  HERGTLDDVIKARNSAMSAQGPAQVSAAENQLSGALGRLIALSEAYPDLKANANFQQLAS 122
           HERGTLD+VIKARN+A+SAQGPAQVSAAE QLSGALGRLIALSEAYPDLKANANFQQLA 
Sbjct: 62  HERGTLDEVIKARNAAISAQGPAQVSAAEGQLSGALGRLIALSEAYPDLKANANFQQLAG 121

Query: 123 ELSDLENKIAASRRFFNNAVQEYNTGIQQMPAALFAGMFGFTRKDFFDLGASRTEVEAAP 182
           ELSD+ENKIAASRRFFNNAV EYNTGIQQMPAALFAG FGFTRK+FFDLGASRTE+EAAP
Sbjct: 122 ELSDIENKIAASRRFFNNAVSEYNTGIQQMPAALFAGTFGFTRKEFFDLGASRTELEAAP 181

Query: 183 SVKF 186
           SVKF
Sbjct: 182 SVKF 185


>ref|YP_578428.1| hypothetical protein Nham_3233 [Nitrobacter hamburgensis X14]
 gb|ABE63968.1| LemA [Nitrobacter hamburgensis X14]
          Length = 186

 Score =  340 bits (873), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 166/186 (89%), Positives = 173/186 (93%)

Query: 1   MSTSWIVIGVIVLLVLFAFGAYNRLVALSQRVGQAFADIDVQLKQRHDLIPNLVETVKGY 60
           MST WIV+G IV+L +FA  AYNRLVALSQRVGQAFADIDVQLKQRHDLIPNLVETVKGY
Sbjct: 1   MSTGWIVLGAIVVLAVFALVAYNRLVALSQRVGQAFADIDVQLKQRHDLIPNLVETVKGY 60

Query: 61  AAHERGTLDDVIKARNSAMSAQGPAQVSAAENQLSGALGRLIALSEAYPDLKANANFQQL 120
           AAHERGTLDDV+KARN+AMSAQGPAQV AAENQLSGALGRLIALSEAYPDLKA+ANFQQL
Sbjct: 61  AAHERGTLDDVVKARNAAMSAQGPAQVGAAENQLSGALGRLIALSEAYPDLKASANFQQL 120

Query: 121 ASELSDLENKIAASRRFFNNAVQEYNTGIQQMPAALFAGMFGFTRKDFFDLGASRTEVEA 180
           A ELSDLENKIAASRRFFNNAVQEYNT IQQMPAALFAG FGFTRK+FFDLGASRT VE 
Sbjct: 121 AGELSDLENKIAASRRFFNNAVQEYNTAIQQMPAALFAGTFGFTRKEFFDLGASRTVVEQ 180

Query: 181 APSVKF 186
            P VKF
Sbjct: 181 TPQVKF 186


>ref|NP_769134.1| hypothetical protein bll2494 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47759.1| bll2494 [Bradyrhizobium japonicum USDA 110]
          Length = 186

 Score =  338 bits (867), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 174/186 (93%), Positives = 180/186 (96%)

Query: 1   MSTSWIVIGVIVLLVLFAFGAYNRLVALSQRVGQAFADIDVQLKQRHDLIPNLVETVKGY 60
           MST WIV+GVIV+LV  AF AYNRLVAL QRVGQAFADIDVQLKQRHDL+PNLVETVKGY
Sbjct: 1   MSTGWIVLGVIVVLVFLAFSAYNRLVALGQRVGQAFADIDVQLKQRHDLVPNLVETVKGY 60

Query: 61  AAHERGTLDDVIKARNSAMSAQGPAQVSAAENQLSGALGRLIALSEAYPDLKANANFQQL 120
           A+HERGTLDDVIKARNSAMSAQGPAQVSAAENQLSGALGRLIALSEAYPDLKANANFQQL
Sbjct: 61  ASHERGTLDDVIKARNSAMSAQGPAQVSAAENQLSGALGRLIALSEAYPDLKANANFQQL 120

Query: 121 ASELSDLENKIAASRRFFNNAVQEYNTGIQQMPAALFAGMFGFTRKDFFDLGASRTEVEA 180
           ASELSDLENKIAASRRFFN+AVQEYNTGIQQMPAALFAGMFGFT+KDFFDLGASRTEVEA
Sbjct: 121 ASELSDLENKIAASRRFFNSAVQEYNTGIQQMPAALFAGMFGFTKKDFFDLGASRTEVEA 180

Query: 181 APSVKF 186
           AP VKF
Sbjct: 181 APQVKF 186