BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0142.p (134 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_486338.1| hypothetical protein RPB_2725 [Rhodopseudomonas... 169 2e-40 ref|YP_781817.1| hypothetical protein RPE_2900 [Rhodopseudomonas... 164 5e-39 ref|ZP_01046687.1| hypothetical protein NB311A_13026 [Nitrobacte... 160 5e-38 ref|YP_318375.1| hypothetical protein Nwi_1762 [Nitrobacter wino... 156 9e-37 ref|NP_948168.1| hypothetical protein RPA2825 [Rhodopseudomonas ... 154 5e-36 >ref|YP_486338.1| hypothetical protein RPB_2725 [Rhodopseudomonas palustris HaA2] gb|ABD07427.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 127 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/135 (64%), Positives = 104/135 (77%), Gaps = 11/135 (8%) Query: 1 MSIFGSIMGAIFGHGAQAKTAES--TTTTAPGAAPSASASASAASGTAAAQTVDVAAIVD 58 MSIFG IMGAIFG A A S T+T APG AP+ +S + TVDVA I+D Sbjct: 1 MSIFGKIMGAIFGSSADAAPGGSAGTSTAAPGTAPAPGSSGA---------TVDVAPILD 51 Query: 59 KAAAATGEKLDWRSSIVDLMKALGLDSSLAARKELAKELHYTGDTSNTATMNVWLHQQVM 118 +A A GEKL+WR+SIVDLMKAL +DSSL+ARKELAKEL YTGDT ++A+MN+WLH+QVM Sbjct: 52 QAVKAKGEKLEWRTSIVDLMKALDIDSSLSARKELAKELGYTGDTGDSASMNIWLHKQVM 111 Query: 119 AKLAANGGKLPDDIK 133 AKLAANGGK+PDD+K Sbjct: 112 AKLAANGGKVPDDLK 126 >ref|YP_781817.1| hypothetical protein RPE_2900 [Rhodopseudomonas palustris BisA53] gb|ABJ06837.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 131 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/133 (65%), Positives = 105/133 (78%), Gaps = 3/133 (2%) Query: 1 MSIFGSIMGAIFGHGAQAKTAESTTTTAPGAAPSASASASAASGTAAAQTVDVAAIVDKA 60 MSIFG IM AIFG GA+A S T T+ G A S + SA +GTA A +VDVA I+DKA Sbjct: 1 MSIFGKIMNAIFGSGAEAAPGASPTGTSTGTA--GSPAGSAPAGTAPA-SVDVAPILDKA 57 Query: 61 AAATGEKLDWRSSIVDLMKALGLDSSLAARKELAKELHYTGDTSNTATMNVWLHQQVMAK 120 A EKL+WR+SIVDLMKAL +DSSL+ARKELAKEL Y+GDT ++A+MN+WLH+QVMAK Sbjct: 58 VADKKEKLEWRTSIVDLMKALDIDSSLSARKELAKELGYSGDTGDSASMNIWLHKQVMAK 117 Query: 121 LAANGGKLPDDIK 133 LAANGGKLP ++K Sbjct: 118 LAANGGKLPAELK 130 >ref|ZP_01046687.1| hypothetical protein NB311A_13026 [Nitrobacter sp. Nb-311A] gb|EAQ35240.1| hypothetical protein NB311A_13026 [Nitrobacter sp. Nb-311A] Length = 159 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 82/132 (62%), Positives = 103/132 (78%), Gaps = 2/132 (1%) Query: 1 MSIFGSIMGAIFGHGAQAKTAESTTTTAPGAAPSASASASAASGTAAAQTVDVAAIVDKA 60 MSIFG IMGAIFG A+A T ES T G SA+ + S ++GTAA +VDVAAI+DKA Sbjct: 26 MSIFGKIMGAIFGSHAEAATPESKPET--GGGFSATPATSTSNGTAAGSSVDVAAILDKA 83 Query: 61 AAATGEKLDWRSSIVDLMKALGLDSSLAARKELAKELHYTGDTSNTATMNVWLHQQVMAK 120 A E+L WR+SIVDLMKAL +DSSL +RKELAK+L + GD +++ATMN+WLH+Q+MA+ Sbjct: 84 VAKKNEQLAWRTSIVDLMKALDVDSSLESRKELAKDLGFPGDMNDSATMNIWLHKQMMAQ 143 Query: 121 LAANGGKLPDDI 132 LAANGGKLP D+ Sbjct: 144 LAANGGKLPPDL 155 >ref|YP_318375.1| hypothetical protein Nwi_1762 [Nitrobacter winogradskyi Nb-255] gb|ABA05023.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 124 Score = 156 bits (395), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 85/135 (62%), Positives = 103/135 (76%), Gaps = 14/135 (10%) Query: 1 MSIFGSIMGAIFGHGAQAKTA--ESTTTTAPGAAPSASASASAASGTAAAQTVDVAAIVD 58 MSIFG IMGAIFG A+A T ES + TAP +P S+ A++VDVAAI+D Sbjct: 1 MSIFGKIMGAIFGSHAEAATPAGESGSGTAP--SPEGSS----------AKSVDVAAILD 48 Query: 59 KAAAATGEKLDWRSSIVDLMKALGLDSSLAARKELAKELHYTGDTSNTATMNVWLHQQVM 118 KA AA EKL WR+SIVDLMKAL +DSSL+ARKELAK+L Y GDT+++A MNVWLH+Q+M Sbjct: 49 KAVAAKKEKLAWRTSIVDLMKALDVDSSLSARKELAKDLKYPGDTNDSAAMNVWLHKQMM 108 Query: 119 AKLAANGGKLPDDIK 133 A+LAANGGKLP D+K Sbjct: 109 AQLAANGGKLPPDMK 123 >ref|NP_948168.1| hypothetical protein RPA2825 [Rhodopseudomonas palustris CGA009] ref|YP_001992144.1| hypothetical protein Rpal_3165 [Rhodopseudomonas palustris TIE-1] pdb|2GQB|A Chain A, Solution Structure Of A Conserved Unknown Protein Rpa2825 From Rhodopseudomonas Palustris; (Northeast Structural Genomics Consortium Target Rpt4; Ontario Centre For Structural Proteomics Target Rp2812 ) emb|CAE28267.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] gb|ACF01669.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 130 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 79/133 (59%), Positives = 97/133 (72%), Gaps = 4/133 (3%) Query: 1 MSIFGSIMGAIFGHGAQAKTAESTTTTAPGAAPSASASASAASGTAAAQTVDVAAIVDKA 60 MSIFG IM AIFG A A + GAA +A A AA ++DVA I+DKA Sbjct: 1 MSIFGKIMSAIFGDSAAASPGGAQAPATTGAA----GTAPTAPQPTAAPSIDVAPILDKA 56 Query: 61 AAATGEKLDWRSSIVDLMKALGLDSSLAARKELAKELHYTGDTSNTATMNVWLHQQVMAK 120 A GEKL+WR+SIVDLMKAL +DSSL+ARKELAKEL Y+GD +++A+MN+WLH+QVM+K Sbjct: 57 VKAKGEKLEWRTSIVDLMKALDIDSSLSARKELAKELGYSGDMNDSASMNIWLHKQVMSK 116 Query: 121 LAANGGKLPDDIK 133 L ANGGKLP +IK Sbjct: 117 LVANGGKLPPEIK 129