BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0141.p (745 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08072405.1| OmpA/MotB domain protein [Methylocystis sp. A... 296 1e-77 ref|ZP_08072406.1| small GTP-binding protein [Methylocystis sp. ... 176 1e-41 ref|YP_004013748.1| OmpA/MotB domain-containing protein [Rhodomi... 174 6e-41 ref|YP_004013745.1| small GTP-binding protein [Rhodomicrobium va... 120 9e-25 ref|ZP_08495375.1| OmpA/MotB domain protein [Microcoleus vaginat... 109 2e-21 >ref|ZP_08072405.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] gb|EFX99837.1| OmpA/MotB domain protein [Methylocystis sp. ATCC 49242] Length = 559 Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 210/565 (37%), Positives = 305/565 (53%), Gaps = 39/565 (6%) Query: 3 AAAGQNREIEQLKTLLFQPEATRLTSLEADLDSLQRYVGNADRLETATAGILVEALERAE 62 +A+G E+LK LL RL ++ + G++ + AT ILVEAL+RAE Sbjct: 2 SASGGGEAFERLKQLLLDETTRRLDVTTERVEKIDARFGDSRKFAAATGDILVEALQRAE 61 Query: 63 VNRPRELASAIAPVVVSAIRSEIKNSREQMIEALYPIVGRLVSAAVANSFRELVASLEQR 122 R EL+ A+AP+V+SAIRSEIKNS+E ++EALYPI+GRLV+AAVA +FRELV +L +R Sbjct: 62 EKRHPELSRAVAPLVISAIRSEIKNSKEMLVEALYPIMGRLVTAAVAGAFRELVETLNER 121 Query: 123 INALTSAQLWVGRVKSLVTGRPISEFVLAD-QPPQINRLLIIERGNGRLIADW----KRD 177 I+AL SA W R++++ TGR ++E LA+ ++ R L++ERG+GR++A W + D Sbjct: 122 IDALVSANSWRLRMRAMATGRTMAEVALAEADAGRLKRALLLERGSGRVLAKWPLAEEGD 181 Query: 178 ATADERADLLSAMVAAILEFSVQALAGE-GNLQTLDFGGRQLALRASPRFILAAECLGPL 236 A D DL S M+AAI EF+ A + G L+ LD G + LRAS R I+AAE G L Sbjct: 182 ARVDANVDLESGMIAAITEFATNVYADKGGELRMLDLGASHVFLRASHRVIIAAEFGGDL 241 Query: 237 RPADNARINSLFFDAIERIDRG-ADCDGPMLASLAAAIETDDTPRRIASRRGKVILFALL 295 +R++ F +ER ++ C G M+ L ++ P + SR+ +I A+ Sbjct: 242 SRHRESRLDEAFLSIVERHEKDEVSCTGEMVGRLLNDALAEE-PAKPKSRKPVMIFAAVA 300 Query: 296 AAVAALLLWLAATSVTRGLVERRTQAALEQLAAKQPLLASFPLQLDFDHGGRSVAVSGIE 355 AA+A W A TR + + R AA A P+LA FPL+++ +H V V G+ Sbjct: 301 AALAIWAAWGPA---TRAIRDWRIGAAARAAMAAHPVLAQFPLRIEVEHDAGRVVVRGLA 357 Query: 356 PSQLETAPLIDALAAAAAPYKVVNRIGLVSAPEQIAASQAGIAGLQQSLTRLQASLDQMR 415 ++ E + DAL AA+PY+V + +V+ Q +AG +L QA ++ +R Sbjct: 358 ANEAEPLAVADALVEAASPYRVEREVSIVALASQTQEMRAGETRAAATLQEAQAQIETLR 417 Query: 416 EAIGAQAKSADQKYTALSEQYDKLGEQYAKLAEQYAKLQAVADGPAARLDRFIATTAIFF 475 + S D +Y A E P +L RF+ T A+FF Sbjct: 418 AELKETRASLD-RYLAQDE------------------------APHVKLRRFVETFAVFF 452 Query: 476 ANNSDEVLDNDQAEQQ-LRELAGLMANNDLRLRIVGYADQSGTEGTNRTLARKRAEQVQR 534 + L N A + L ELAGLM + LR+VGYAD+ G+ NR +RKRA+++ Sbjct: 453 TEL--DTLSNPAATAKGLDELAGLMKASGANLRVVGYADEVGSATLNRAASRKRADKIVS 510 Query: 535 RLTALGVDPSRLILVSRAATMPITD 559 L GV RL LV R+ PI D Sbjct: 511 MLVERGVPRQRLALVPRSTLDPIAD 535 >ref|ZP_08072406.1| small GTP-binding protein [Methylocystis sp. ATCC 49242] gb|EFX99838.1| small GTP-binding protein [Methylocystis sp. ATCC 49242] Length = 164 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/171 (52%), Positives = 126/171 (73%), Gaps = 12/171 (7%) Query: 580 MLTAKVMLLGDMGVGKTSILYRLIYNRFEGQYKSTLGVEILSHDV-VPAD-GSDPMRLVL 637 M++AKVMLLGD+GVGK+S+ R ++NRFE +YK+T+GV++L+HDV + A+ +D +R VL Sbjct: 1 MISAKVMLLGDIGVGKSSLARRFVFNRFESEYKTTIGVDVLTHDVDLGAECNNDKLRFVL 60 Query: 638 WDTDGDFGTQIFDTVYVTGASAAIIVSDVTRPQTVTRMVELVRGFEERFPGRPYRALLNK 697 WDTDGDFG++IF+TVY+ GASAAI+V+D TRP T+ +M L FEE FPGRP A++NK Sbjct: 61 WDTDGDFGSRIFETVYLAGASAAIVVADATRPATLVKMSALASRFEESFPGRPVSAIVNK 120 Query: 698 IDL-PEAAGSAGAIAGLARSSVKSV--SAKTGVGIVESFVELAQTIRRRQL 745 IDL PE + + S +K+V SA+TG G+ E F+ L + I RR + Sbjct: 121 IDLAPE-------LPDVGDSCIKAVYTSARTGEGVEEMFLGLGRAIWRRAI 164 >ref|YP_004013748.1| OmpA/MotB domain-containing protein [Rhodomicrobium vannielii ATCC 17100] gb|ADP72649.1| OmpA/MotB domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 568 Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 163/568 (28%), Positives = 278/568 (48%), Gaps = 53/568 (9%) Query: 14 LKTLLFQPEATRLTSLEADLDSLQRYVGNADRLETATAGILVEALERAEVNRPRELASAI 73 LK +LF E+ L + A + + + +G+ ++L + A +L A+ A + LA ++ Sbjct: 10 LKDVLFGRESAALEDVRALVAAHDQSIGSPEQLRESVADVLAGAMRSAGIKDRSGLAISM 69 Query: 74 APVVVSAIRSEIKNSREQMIEALYPIVGRLVSAAVANSFRELVASLEQRINALTSAQLWV 133 APV++ IRSEI+NSR ++++ALYPI+GRL SA V ++FR+ + QR+ S + Sbjct: 70 APVIIDGIRSEIRNSRNEIVDALYPILGRLTSAYVMSAFRDFMEQTNQRLEGGLSGRFIW 129 Query: 134 GRVKSLVTGRPISEFVLADQPP-QINRLLIIERGNGRLIADWKRD--ATADERAD---LL 187 R+ VTG+ ++ +L + ++ +L+I+ G L+ W+ A + AD + Sbjct: 130 LRLYCFVTGKSYAKALLRRRSAFRVQEILLIDAETGALVDSWQAPDLAVGEPIADDGPRV 189 Query: 188 SAMVAAILEFSVQAL-AGEGNLQTLDFGGRQLALRASPRFILAAECLGPLRPA-----DN 241 +AM+AA+ F+ +AL A +L+++D G Q+ LR + + + C G R + D Sbjct: 190 TAMLAAVNRFASEALKAKRQSLKSIDLGDSQIYLRMTAKMLFVLRCEGYARASLLDVLDK 249 Query: 242 ARINSLFFDA--IERIDR--GADCDGPMLASLAAAIETDDTPRRIASRRGKVILFALLAA 297 A +N L + DR A LA+LA ++ + RR RR +FA++ Sbjct: 250 AIVNVLDVHEPRLSSPDRHTAAQSARETLAALAEKVQETLSQRR---RRP---VFAIVLY 303 Query: 298 VAALLLWLAATSVTRGLVER----RTQAALEQLAAKQPLLASFPLQLDFDHGGRSVAVSG 353 A +L LA ER R AA +A P + FP+ + FD GRS+ +SG Sbjct: 304 SAFILAVLAFAGFRYWQSERLEAIRDTAA--SIARAYPGVLGFPVDVRFDGDGRSLILSG 361 Query: 354 IEPSQLETAPLIDALAAAAAPYKVVNRIGLVSAPEQIAASQAGIAGLQQSLTRLQASLDQ 413 + PS + +++ VV+R+ ++ ++ Q ++ + L ++A ++ Sbjct: 362 LVPSYSVKEGVETQVSSHVTELPVVSRLLVLPEQRKVEELQGAVSAIMDKLAAIEARIE- 420 Query: 414 MREAIGAQAKSADQKYTALSEQYDKLGEQYAKLAEQYAKLQAVAD---GPAARLDRFIAT 470 A AD K A++AEQ L+ V+ P R + Sbjct: 421 -----AGNASLADLK---------------ARVAEQGETLKTVSAQVFSPQQRFTEWARR 460 Query: 471 TAIFFANNSDEVLDNDQAEQQLRELAGLMANNDLRLRIVGYADQSGTEGTNRTLARKRAE 530 AIFF + + + + D A +++ ELA ++AN+D+RL +VG+ D G N+ L ++RA+ Sbjct: 461 NAIFFGDGT-KFRNPDIASRKIAELAAIVANSDIRLLVVGFTDSLGQSERNQQLGQERAK 519 Query: 531 QVQRRLTALGVDPSRLILVSRAATMPIT 558 V L LGV RL VSR IT Sbjct: 520 AVVDELVKLGVAEDRLATVSRRTETVIT 547 >ref|YP_004013745.1| small GTP-binding protein [Rhodomicrobium vannielii ATCC 17100] gb|ADP72646.1| small GTP-binding protein [Rhodomicrobium vannielii ATCC 17100] Length = 171 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 66/164 (40%), Positives = 100/164 (60%), Gaps = 3/164 (1%) Query: 584 KVMLLGDMGVGKTSILYRLIYNRFEGQYKSTLGVEILSHDVVPADGS--DPMRLVLWDTD 641 K++LLG++GVGKTS+ RL++ F+ YK+T+GV+I + A + L++WD D Sbjct: 7 KLLLLGEVGVGKTSLARRLVFGTFDSSYKATIGVDIFDFKLKAAVSGLLVDVNLLIWDID 66 Query: 642 GDFGTQIFDTVYVTGASAAIIVSDVTRPQTVTRMVELVRGFEERFPGRPYRALLNKIDLP 701 GD+ I+ +Y GA+ A+IVSDV+RP T V+L GFE FPGRP + ++NK DL Sbjct: 67 GDYSQDIYRHIYSAGATGALIVSDVSRPLTQKAAVDLWGGFEREFPGRPAKIVMNKADLL 126 Query: 702 EAAGSAGAIAGLARSSVKSVSAKTGVGIVESFVELAQTIRRRQL 745 + S A + V + SAKTG ++++F E+A+ R L Sbjct: 127 TSPASTLMPAAIGVDFVWT-SAKTGYLVLDAFAEIARHCVARGL 169 >ref|ZP_08495375.1| OmpA/MotB domain protein [Microcoleus vaginatus FGP-2] gb|EGK83893.1| OmpA/MotB domain protein [Microcoleus vaginatus FGP-2] Length = 905 Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 131/542 (24%), Positives = 245/542 (45%), Gaps = 58/542 (10%) Query: 42 NADRLETATAGILVEALERAEVNRPRELASAIAPVVVSAIR------------------- 82 N + A A +L EAL + VN P ++A+AIAP + AI+ Sbjct: 349 NKSAMSAAIAELLPEALAQQIVNSPADIANAIAPEIGLAIKEQIRLDKESIVQALAPEMG 408 Query: 83 ----SEIKNSREQMIEALYPIVGRLVSAAVANSFRELVASLEQRINALTSAQLWVGRVKS 138 ++IK R+ M++ALYP++G +S +A E + ++ ++++ S + + +++S Sbjct: 409 KTITAQIKLERDSMVDALYPVIGSTISRYMA----EAIKTINEKVSNAISVEGFQRKIRS 464 Query: 139 LVTGRPISEFVLADQPP-QINRLLIIERGNGRLIADWKRDATADERADLLSAMVAAILEF 197 V G +E +L + P + +I + +G +I++ + + +++++ M+ AI F Sbjct: 465 KVQGVSEAELILKESVPFTVQAAFLIHKASGLIISEVQNSESYQLESEMVAGMLTAIRSF 524 Query: 198 SVQALAGEG---NLQTLDFGGRQLALRASPRFILAAECLGPLRPADN------ARINSLF 248 + G G L +++G ++ L + +A G P D+ +++L Sbjct: 525 VNDCIVGPGEVSELNQIEYGDSKIMLEVAGYCYMAVVIKG--EPPDSFIKKTRETVSNLI 582 Query: 249 FDAIERIDRGADCDGPMLASLAAAIETDDTP-RRIASRRGKVILFALLAAVAALLLWLAA 307 + + I G + SL I+T P ++ S + + L + A +L+L Sbjct: 583 LNYAKVIHEFNGDPGTIPESLHPFIKTLFDPLQKEKSTKPPIALAGIGLAALSLILVPWG 642 Query: 308 TSVTRGLVERRTQAALEQLAAKQPLLASFPLQLDFDHGGRSVAVSGIEPSQLETAPLIDA 367 R VERR +A A P LA + L + D G+++ ++G P+Q E + Sbjct: 643 IYQYRSSVERRLEANAVAALASTPELAVYRLDVAVD--GKTLKLTGKLPNQ-ELRAQAEK 699 Query: 368 LAAAAAP-YKVVNRIGLVSAPEQIAASQAGIAGLQQSLTRLQASLDQMREAIGAQAKSAD 426 +AA+ AP ++ NRI V P + A + R+ A L+Q RE + + D Sbjct: 700 IAASTAPKLQLDNRIIAVDVPPDPVLTAAEV-------QRITAVLNQ-REGVSISTRYGD 751 Query: 427 QKYTALSEQYDKLGEQYAKLAEQYAKLQAVADG-PAARLDRFIATTAIFFANNSDEVLDN 485 +K T D Q K+AE ++ V +L+ TT I+F + ++ Sbjct: 752 RKLTVEGRVRDSADAQ--KIAESLKQIPGVQSVISTVKLEPVKITTRIYFEQGTTKLDST 809 Query: 486 DQAEQQLRELAGLMANNDLR-LRIVGYADQSGTEGTNRTLARKRAEQVQRRLTALGVDPS 544 D E+ + + M + ++I+G++DQSG N+ L+ +RA V+ L G +P Sbjct: 810 D--EEIIARVKNFMDQYPQKQIKIIGHSDQSGELAKNQQLSLRRATAVRDALVRQGANPK 867 Query: 545 RL 546 RL Sbjct: 868 RL 869