BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0138.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08070767.1| histidine kinase [Methylocystis sp. ATCC 4924... 168 1e-39 ref|YP_002947416.1| histidine kinase [Variovorax paradoxus S110]... 127 3e-27 ref|ZP_08428602.1| signal transduction histidine kinase [Lyngbya... 114 3e-23 ref|ZP_06972358.1| integral membrane sensor signal transduction ... 112 8e-23 ref|NP_923293.1| two-component sensor histidine kinase [Gloeobac... 106 5e-21 >ref|ZP_08070767.1| histidine kinase [Methylocystis sp. ATCC 49242] gb|EFY01294.1| histidine kinase [Methylocystis sp. ATCC 49242] Length = 358 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 139/351 (39%), Positives = 196/351 (55%), Gaps = 30/351 (8%) Query: 3 DLSADLLAAAEADVIGLAVIGADRSMQRKIGRLVEWLPATGVDCCECVLLVGMEAELAAL 62 D+ AD LA + +G+A++ ++ R++GRL WLP G C LL+ ME LAAL Sbjct: 13 DVFADALARGQ---LGVALVDDGLTVARRLGRLSAWLPDEGEKACSAPLLLHMEESLAAL 69 Query: 63 AQGQRDMIALAGVRGASPDITQPMTAVVLWNGAQSHYFVIAMPDFAGRQVETLLGSERRA 122 + + I L +R A+P+ + +T + W+ A + V+ PD G Q++ LL SERR Sbjct: 70 KE-RGGEIVLPSMR-AAPEAPR-VTISIAWDAAARGFVVVTAPDHGGDQIDRLLASERRE 126 Query: 123 RRLMEQ-----------QLEAASAEVRFASLARTRLRLARDLHDTLVHSIVALLTQIRLI 171 ++L++Q + E A E + A++A RLR+A DLHDTLV S+V L+TQ RLI Sbjct: 127 KQLLQQQADAAAARLRVEREKAQEEAQAAAIANERLRIAHDLHDTLVRSMVTLITQSRLI 186 Query: 172 RHYLSADPARVADSLATAEDAAASGLNRAREAIDRLRTPDDLKLDPDVEGLLSDFAARSG 231 + ARVA LA + A GL AREAI R R ++ + D+ ++ F+ R G Sbjct: 187 ARKTNDAEARVA--LAMLDVQAREGLQEAREAIARTR--EERRDLYDLRRIVDGFSERMG 242 Query: 232 ---VRVSIQIDEAARPGLRDCGLTVQRILSEALRNVQTHAQARRVSFHAFDEPAAVGRKL 288 V V A P R+ +L EALRN++ HA ARRV A + A V R L Sbjct: 243 DIAVTVEFGFPSAELP--RETEQLFAAVLREALRNIELHAGARRVRV-ALAKDAGVTR-L 298 Query: 289 IVEIRDDGRGFDLAVPTPGHFGLIGMAEFAELVGGSCAVESAPGQGTLVRI 339 +VE DDG GFD + PTPGHFG+ GM E A L G + ++SAPG+GT V + Sbjct: 299 LVE--DDGTGFDPSAPTPGHFGVTGMRERARLGGATLVLDSAPGKGTRVTL 347 >ref|YP_002947416.1| histidine kinase [Variovorax paradoxus S110] gb|ACS22150.1| histidine kinase [Variovorax paradoxus S110] Length = 620 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 124/220 (56%), Gaps = 5/220 (2%) Query: 128 QQLEAASAEVRFASLARTRLRLARDLHDTLVHSIVALLTQIRLIRHYLSADPARVADSLA 187 +++ + E R A++ R RLRLAR LHDTL HS++A+LT+IR+++H S P + + L Sbjct: 402 EEINRLAQESRDAAVVRERLRLARGLHDTLAHSMMAMLTEIRVLKHLASNRPDALPNELV 461 Query: 188 TAEDAAASGLNRAREAIDRLRTPD--DLKLDPDVEGLLSDFAARSGVRVSIQIDEAARPG 245 AE AA GL+ AR AID+LR+ D+ L + L RSG+ + +ID A Sbjct: 462 RAERAARDGLDEARRAIDQLRSNPVRDIGLGAALAELAKSLGERSGIELDCRIDPALSAL 521 Query: 246 LRDCGLTVQRILSEALRNVQTHAQARRVSFHAFDEPAAVGRKLIVEIRDDGRGFDLAVPT 305 + TV + E LRNV+ HA A R+ + G +L EI DDG GF+ + Sbjct: 522 AAEPAETVFHMCEEVLRNVERHAGAARLLIR-LQRMGSDGIEL--EIADDGIGFEPSAGA 578 Query: 306 PGHFGLIGMAEFAELVGGSCAVESAPGQGTLVRIRSACAG 345 GH+GL+G+ E AE +G ++S G+GT V +R AG Sbjct: 579 AGHYGLVGLREQAEAIGAHLRIDSRSGEGTRVSLRWRHAG 618 >ref|ZP_08428602.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gb|EGJ32152.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 385 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 12/225 (5%) Query: 116 LGSERRARRLMEQQLEAASAEVRFASLARTRLRLARDLHDTLVHSIVALLTQIRLIRHYL 175 L +E R+R QQ A + EV + R R+ARD+HD+L H++ +L Q+ L + Sbjct: 170 LVAEYRSR----QQAIALTQEVELLAADLERTRIARDIHDSLGHTLTSLDVQLELAQRLY 225 Query: 176 SADPARVADSLATAEDAAASGLNRAREAIDRLRTPDDLKLDPDVEGLLSDFAARSGVRVS 235 + ++ +L TA+ A+ L R A+ +R + L+ + LL F + + V Sbjct: 226 ERNSNQLQPALDTAKLLASQSLQEVRRAVTTMR-EETFDLNKALPQLLESFTSNPSITVK 284 Query: 236 IQIDEAARPGLRDCGLTVQRILSEALRNVQTHAQARRVSFHAFDEPAAVGRKLIVEIRDD 295 +ID P + L ++ E L N++ H+QA+ + + AV I+E++DD Sbjct: 285 SKIDLPQLPLQTNHQLYC--VVKEGLENIRKHSQAQVIHLKGYASADAV----ILELKDD 338 Query: 296 GRGFDLAVPTPGHFGLIGMAEFAELVGGSCAVESAPGQGTLVRIR 340 G GFD+A PT G FGL GM E +L+GGS ++S PGQG+ ++IR Sbjct: 339 GIGFDIAKPTQG-FGLRGMQERVQLIGGSIQLDSTPGQGSCIQIR 382 >ref|ZP_06972358.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gb|EFH85078.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 463 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 134/258 (51%), Gaps = 22/258 (8%) Query: 99 YFVIAMPDFAGRQVETLLGSERRARRLM--EQQLEAASAEVRFASLARTRLRLARDLHDT 156 +FV+ +Q + ER R L ++L A+S ++ +L R R+AR+LHDT Sbjct: 191 FFVLGYLVLYWQQSHSQTQLERAHRELQAAHRELAASSRQIETLTLLAERQRMARELHDT 250 Query: 157 LVHSIVALLTQIRLI------RHYLSADPARVADSLATAEDAAASGLNRAREAIDRLR-- 208 L+ + ++ Q++++ +HY A A L+ +A + L AR AI LR Sbjct: 251 LLQGMAGIIMQLKVMSAQMDRQHYRQAQQA-----LSQTLSSAGTALVEARHAIRDLRAK 305 Query: 209 TPDDLKLDPDVEGLLSDFAARSGVRVSIQIDEAARPGLRDCGLTVQRILSEALRNVQTHA 268 TP + V+ ++ F+ +G+ ++D+ + C V R++ EAL NV HA Sbjct: 306 TPRIEQFVASVQEEIAHFSQLTGIECHTELDDLGHTPPQHCE-HVLRVMGEALSNVARHA 364 Query: 269 QARRVSFHAFDEPAAVGRKLIVEIRDDGRGFDLAVPT--PGHFGLIGMAEFAELVGGSCA 326 +AR VS E + + L + ++DDG+GFD A GH+GL+G+ E A+LVGGS + Sbjct: 365 RARHVSV----EARVMEKWLSITVQDDGQGFDPASSELHTGHYGLLGLQERAQLVGGSLS 420 Query: 327 VESAPGQGTLVRIRSACA 344 + SA G GT +R R A Sbjct: 421 LSSAKGAGTTLRFRVPLA 438 >ref|NP_923293.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] dbj|BAC88288.1| glr0347 [Gloeobacter violaceus PCC 7421] Length = 402 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/194 (37%), Positives = 104/194 (53%), Gaps = 8/194 (4%) Query: 146 RLRLARDLHDTLVHSIVALLTQIRLIRHYLSADPARVADSLATAEDAAASGLNRAREAID 205 R R+ARD+HD+L H++ AL ++ + + DP R ++ TA+ + L R A+ Sbjct: 213 RARIARDIHDSLGHTLTALDVKLEVAQELYCRDPDRARQAVHTAKQLSGQCLQDVRLAVQ 272 Query: 206 RLRTPDDLKLDPDVEGLLSDFAARSGVRVSIQIDEAARPGLRDCGLTVQRILSEALRNVQ 265 +R P L LD +EGL + V + ID P L I+ E L N+Q Sbjct: 273 AMRRP-PLHLDAALEGLAEQVRQNRALAVEVHIDLPQLPLQTSHQLYC--IVQEGLTNIQ 329 Query: 266 THAQARRVSFHAFDEPAAVGRKLIVEIRDDGRGFDLAVPTPGHFGLIGMAEFAELVGGSC 325 HA+A RVS A P +V +E+ DDG+GFD T G FGL GM E +++GGS Sbjct: 330 RHARAARVSLRACHTPQSV----TLELWDDGQGFD-PQATHGGFGLRGMHERMQVLGGSL 384 Query: 326 AVESAPGQGTLVRI 339 A+ SAPG+GT +R+ Sbjct: 385 AIASAPGRGTRIRL 398