BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0129.p (222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774508.1| ABC transporter substrate-binding protein [Brad... 318 3e-85 ref|YP_998273.1| ABC transporter substrate-binding protein [Verm... 229 2e-58 ref|YP_998039.1| ABC transporter substrate-binding protein [Verm... 158 7e-37 ref|YP_001240759.1| putative ABC transporter ribose binding prot... 149 4e-34 ref|ZP_05843365.1| binding protein component of sugar ABC transp... 148 5e-34 >ref|NP_774508.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53133.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 338 Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 152/173 (87%), Positives = 160/173 (92%) Query: 1 MKYAVRTAKVIAAALGLAAIAAPALAQQGLDEPFQKPFREALAGKTVAYVPVAMNFDLTE 60 MK+ K I AALGLAA+ APALAQQGLDEPFQKPF+EALAGKTVAYVPVAMNFDLTE Sbjct: 1 MKHLGSPTKAIVAALGLAAMTAPALAQQGLDEPFQKPFKEALAGKTVAYVPVAMNFDLTE 60 Query: 61 GWYAGMKKELEPYGVKFEIRDPNWNTNAGAQAVTSLISEKPAVMVIHNPDVQTYAKLLQR 120 GWYAG+KKELEP GVKF IRD NWNTNAGAQAVTSLISEKPAVMV+HNPDVQTYAKLLQR Sbjct: 61 GWYAGLKKELEPLGVKFVIRDANWNTNAGAQAVTSLISEKPAVMVVHNPDVQTYAKLLQR 120 Query: 121 AENEGIYVIQINMGSAYRSSAFVGANWIEIGERDTEAVVKACQGKSNKIAIVQ 173 AENEGIYVIQINMGSAYRSSAFVGANW+EIGER TE VVKAC+GKSNKIAI+Q Sbjct: 121 AENEGIYVIQINMGSAYRSSAFVGANWVEIGERQTEGVVKACEGKSNKIAIIQ 173 >ref|YP_998273.1| ABC transporter substrate-binding protein [Verminephrobacter eiseniae EF01-2] gb|ABM59255.1| ABC transporter substrate-binding protein [Verminephrobacter eiseniae EF01-2] Length = 337 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 110/173 (63%), Positives = 136/173 (78%) Query: 1 MKYAVRTAKVIAAALGLAAIAAPALAQQGLDEPFQKPFREALAGKTVAYVPVAMNFDLTE 60 M +A + A + L LA A +GLDEPF+ +++ALAGKTV ++PVAM FDLT Sbjct: 1 MNFAHKLATTVGTVLALAGAQHAAAQGKGLDEPFRDGYKKALAGKTVGFIPVAMGFDLTN 60 Query: 61 GWYAGMKKELEPYGVKFEIRDPNWNTNAGAQAVTSLISEKPAVMVIHNPDVQTYAKLLQR 120 GWY G+KKELEP G+K +RDPNWNT AGAQA T+LI+EKPAV+V+HNPDVQTYAKL+ + Sbjct: 61 GWYLGLKKELEPSGMKVVLRDPNWNTGAGAQAFTALIAEKPAVIVVHNPDVQTYAKLITK 120 Query: 121 AENEGIYVIQINMGSAYRSSAFVGANWIEIGERDTEAVVKACQGKSNKIAIVQ 173 AE EGIYV+QINM SA S+ FVGA+WI++GER AV++ACQGKSNKIAIVQ Sbjct: 121 AEAEGIYVVQINMRSAQPSTVFVGADWIDVGERGATAVMQACQGKSNKIAIVQ 173 >ref|YP_998039.1| ABC transporter substrate-binding protein [Verminephrobacter eiseniae EF01-2] gb|ABM59021.1| ABC transporter substrate-binding protein [Verminephrobacter eiseniae EF01-2] Length = 341 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 123/181 (67%), Gaps = 6/181 (3%) Query: 13 AALGLAAIAAPALAQQGLDEPFQKPFREALAGKTVAYVPVAMNFDLTEGWYAGMKKELEP 72 A +G+ A A AQ+ +++PF++P AL GKT+AY+P+++ FDL + W +K+E + Sbjct: 12 AVIGMTLGAGSAWAQKEMNDPFREPALAALRGKTIAYLPISLGFDLAQAWGGVIKQEADR 71 Query: 73 YGVKFEIRDPNWNTNAGAQAVTSLISEKPAVMVIHNPDVQTYAKLLQRAENEGIYVIQIN 132 YG+KF +DPNW+T+A AQ +TSLI++KP V+V NPD+Q+ A+LL++A GI+VIQ+N Sbjct: 72 YGMKFISQDPNWSTDAMAQGMTSLIAQKPDVIVTQNPDLQSLARLLKQANAAGIHVIQMN 131 Query: 133 MGSAYRSSAFVGANWIEIGERDTEAVVKAC---QGKSNKIAIVQ---XGGRQRLHAQGRR 186 M A ++ AFVG ++I +G++ +VKAC S+KI+IVQ GG QG + Sbjct: 132 MQGAVQTDAFVGPDFIALGQQVAHMMVKACGKGTNTSHKISIVQGVVTGGVSYYQVQGIK 191 Query: 187 E 187 + Sbjct: 192 K 192 >ref|YP_001240759.1| putative ABC transporter ribose binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ36853.1| monosaccharide ABC transporter substrate-binding protein, CUT2 family [Bradyrhizobium sp. BTAi1] Length = 339 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/165 (44%), Positives = 113/165 (68%), Gaps = 8/165 (4%) Query: 30 LDEPFQKPFREALAGKTVAYVPVAMNFDLTEGWYAGMKKELEPYGVKFEIRDPNWNTNAG 89 +++P+++P +AL GK++ Y+P+++ FDL + W +K E E YG+KF+ +DPNWNT A Sbjct: 27 MNDPYRQPALDALKGKSIVYLPISIGFDLAQAWGGVVKTEAERYGMKFKSQDPNWNTGAM 86 Query: 90 AQAVTSLISEKPAVMVIHNPDVQTYAKLLQRAENEGIYVIQINMGSAYRSSAFVGANWIE 149 AQ +TSLI+EKP V+V NPD+Q+ A+LL++A GI VIQ+NM A ++ AFVG ++I Sbjct: 87 AQGLTSLIAEKPDVIVTQNPDLQSLARLLKQANAAGIVVIQMNMQGAVQTDAFVGPDFIA 146 Query: 150 IGERDTEAVVKACQGK----SNKIAIVQ---XGGRQRLHAQGRRE 187 +GE+ + VV C GK S+K++IVQ GG QG ++ Sbjct: 147 MGEQAAKMVVAKC-GKGTETSHKVSIVQGVLTGGVSYYQVQGIKK 190 >ref|ZP_05843365.1| binding protein component of sugar ABC transporter [Rhodobacter sp. SW2] gb|EEW25583.1| binding protein component of sugar ABC transporter [Rhodobacter sp. SW2] Length = 337 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 75/173 (43%), Positives = 117/173 (67%), Gaps = 8/173 (4%) Query: 5 VRTAKVIAAALGLAA-IAAPALAQQGLDEPFQKPFREALAGKTVAYVPVAMNFDLTEGWY 63 ++ K + +A+ LAA + PA+A+ +P + AL GK V VP+AM FDL +GW Sbjct: 1 MKLLKTMVSAIALAAALMTPAMAE----DPGPAAYSAALTGKKVVLVPLAMGFDLAQGWS 56 Query: 64 AGMKKELEPYGVKFEIRDPNWNTNAGAQAVTSLISEKPA--VMVIHNPDVQTYAKLLQRA 121 A +K+E+E +G FE RDPNW+T AGAQA+T IS P V+V+ +PD+ ++AK+L++A Sbjct: 57 AILKREVEAFGGSFETRDPNWSTEAGAQALTEAISSDPHPDVLVVMSPDLNSFAKILKKA 116 Query: 122 ENEGIYVIQINMGSAYRSSAFVGANWIEIGERDTEAVVKAC-QGKSNKIAIVQ 173 + GIYVI I+ + + + A+VG++W ++G+ + EAV+K C +G S KI +VQ Sbjct: 117 QEAGIYVILIDNPANFPADAYVGSDWNKLGQLEAEAVIKGCGEGSSGKIGLVQ 169