BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0128.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774508.1| ABC transporter substrate-binding protein [Brad...   240   5e-62
ref|YP_998273.1| ABC transporter substrate-binding protein [Verm...   175   2e-42
ref|ZP_05843365.1| binding protein component of sugar ABC transp...    96   2e-18
ref|ZP_04622160.1| Binding protein component of sugar ABC transp...    94   5e-18
ref|YP_004119400.1| binding protein component of sugar ABC trans...    93   1e-17

>ref|NP_774508.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum
           USDA 110]
 dbj|BAC53133.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum
           USDA 110]
          Length = 338

 Score =  240 bits (612), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 115/119 (96%), Positives = 117/119 (98%)

Query: 1   VLKQNPDLCGIVGFWDGMDIGTAAAVKEAGLTGKVFVATSGGGERKGACELVKSGAFDLN 60
           VLKQNPDLCGIVGFWDGMDIGTAAAVKEAGLTGKVF+ATSGGGERKGACELVKSGAFDLN
Sbjct: 220 VLKQNPDLCGIVGFWDGMDIGTAAAVKEAGLTGKVFLATSGGGERKGACELVKSGAFDLN 279

Query: 61  MSYDVPTQAAQMAGTIKWLLSSGAKAGSIKGSEYTTLIPITKENADSQTACWNLSDLKK 119
           MSYDVPTQAAQMAGTIKWLLSSG K GS+KGSEYTTLIPITKENADSQTACWNLSDLKK
Sbjct: 280 MSYDVPTQAAQMAGTIKWLLSSGVKPGSVKGSEYTTLIPITKENADSQTACWNLSDLKK 338


>ref|YP_998273.1| ABC transporter substrate-binding protein [Verminephrobacter
           eiseniae EF01-2]
 gb|ABM59255.1| ABC transporter substrate-binding protein [Verminephrobacter
           eiseniae EF01-2]
          Length = 337

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/115 (71%), Positives = 97/115 (84%)

Query: 1   VLKQNPDLCGIVGFWDGMDIGTAAAVKEAGLTGKVFVATSGGGERKGACELVKSGAFDLN 60
           VLKQ+PDLCGIVGFWDGMDIGTAAA+KEAGLTGKVF+ATSGGGE+K AC+ VKSGAFD  
Sbjct: 220 VLKQHPDLCGIVGFWDGMDIGTAAAIKEAGLTGKVFLATSGGGEQKSACDQVKSGAFDYL 279

Query: 61  MSYDVPTQAAQMAGTIKWLLSSGAKAGSIKGSEYTTLIPITKENADSQTACWNLS 115
           +SYDVPTQA+ MA  IKWL+  G K G+ + + YTTL+PITKENA ++  CW L+
Sbjct: 280 VSYDVPTQASNMAAMIKWLVQGGVKPGAARQNIYTTLLPITKENAGAEGTCWKLA 334


>ref|ZP_05843365.1| binding protein component of sugar ABC transporter [Rhodobacter sp.
           SW2]
 gb|EEW25583.1| binding protein component of sugar ABC transporter [Rhodobacter sp.
           SW2]
          Length = 337

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 73/118 (61%), Gaps = 1/118 (0%)

Query: 1   VLKQNPDLCGIVGFWDGMDIGTAAAVKEAGLTGKVFVATSGGGERKGACELVKSGAFDLN 60
           +L+QNPD+CGI+ FWD    GT+AA+++AGL+ KVF+ T+GGGE+   C  ++ G +   
Sbjct: 216 MLQQNPDICGIIDFWDATAAGTSAAIRDAGLSDKVFLVTTGGGEKTADCATLEDGTYGAV 275

Query: 61  MSYDVPTQAAQMAGTIKWLLSSGAKAGSIKGSEYTTLIPITKENADSQTACWNLSDLK 118
           +  D+  ++  M   IK+LL SG  AG+     YT L   TK +  +  +CW+L  ++
Sbjct: 276 VMTDLARESGDMVAMIKYLLQSGQPAGTASPYIYTLLKATTKADL-APDSCWDLKAMQ 332


>ref|ZP_04622160.1| Binding protein component of sugar ABC transporter [Yersinia
           kristensenii ATCC 33638]
 ref|ZP_04622412.1| Binding protein component of sugar ABC transporter [Yersinia
           kristensenii ATCC 33638]
 gb|EEP93151.1| Binding protein component of sugar ABC transporter [Yersinia
           kristensenii ATCC 33638]
 gb|EEP93403.1| Binding protein component of sugar ABC transporter [Yersinia
           kristensenii ATCC 33638]
          Length = 332

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 75/116 (64%), Gaps = 2/116 (1%)

Query: 1   VLKQNPDLCGIVGFWDGMDIGTAAAVKEAGLTGKVFVATSGGGERKGACELVKSGAFDLN 60
           +++Q+PD+CGIV FW     GT AA+++AG TGK+F+AT+GGGE +  C+ + +G  D  
Sbjct: 215 LIQQHPDVCGIVDFWSTTAQGTGAAIRDAGKTGKIFLATTGGGE-QADCDRLNNGIIDAL 273

Query: 61  MSYDVPTQAAQMAGTIKWLLSSGAKAGSIKGSEYTTLIPITKENADSQTACWNLSD 116
           +S DVP Q+  ++  +K+LL SG +AG+ K   YT     T+ +    T CW+L D
Sbjct: 274 VSTDVPNQSRDVSTLVKYLLQSGTQAGNSKTWIYTPESITTRSDVKPGT-CWSLKD 328


>ref|YP_004119400.1| binding protein component of sugar ABC transporter [Pantoea sp.
           At-9b]
 gb|ADU72844.1| binding protein component of sugar ABC transporter [Pantoea sp.
           At-9b]
          Length = 332

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 74/114 (64%), Gaps = 2/114 (1%)

Query: 1   VLKQNPDLCGIVGFWDGMDIGTAAAVKEAGLTGKVFVATSGGGERKGACELVKSGAFDLN 60
           +++Q+PD+CGIV FW     GT AA+++AG TGK+F+AT+GGGE +  C+ + +G  D  
Sbjct: 215 LIQQHPDVCGIVDFWSTTAQGTGAAIRDAGKTGKIFLATTGGGE-QADCDRLNNGVIDAL 273

Query: 61  MSYDVPTQAAQMAGTIKWLLSSGAKAGSIKGSEYTTLIPITKENADSQTACWNL 114
           +S DVP Q+  ++  +K+LL SG  AG+ K   YT     T+ +  S T CW+L
Sbjct: 274 VSTDVPNQSRDVSTLVKFLLQSGVAAGTSKTWLYTPESITTRNDLKSGT-CWSL 326