BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0127.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774509.1| ABC transporter permease protein [Bradyrhizobiu... 463 e-128 ref|YP_998272.1| inner-membrane translocator [Verminephrobacter ... 311 6e-83 ref|ZP_05843366.1| inner-membrane translocator [Rhodobacter sp. ... 221 1e-55 ref|YP_001240758.1| ABC transporter [Bradyrhizobium sp. BTAi1] >... 218 5e-55 ref|NP_103243.1| permease protein of sugar ABC transporter [Meso... 212 4e-53 >ref|NP_774509.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53134.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 707 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/251 (92%), Positives = 243/251 (96%) Query: 1 MPMRDTLTSLRYRYWPDHLLGEILSKRWTETAIPVILLLIVGFALSRSIDHFLSPSGLAD 60 MPMRDTLTSLRYRYWPDHLLGEILSKRWTETAIPVILLLIVG ALSRSID+FLSP+ LAD Sbjct: 1 MPMRDTLTSLRYRYWPDHLLGEILSKRWTETAIPVILLLIVGLALSRSIDNFLSPASLAD 60 Query: 61 TARQAGEIGFIGLGMALVVIVGGIDLSVGSIFALTDFCALYLLDVLNWPVPAVVVATLVC 120 TARQAGEIGFI LG+ALVVIVGGIDLSVGSIFALTDFCALYLLDVL WPVPAVV ATL+C Sbjct: 61 TARQAGEIGFIALGLALVVIVGGIDLSVGSIFALTDFCALYLLDVLGWPVPAVVAATLLC 120 Query: 121 GALLGAVNGVLIGYLRLRAFITTLITLIIYRSAFDLLIQRYSNSIAAAFPDIPSWNFIGG 180 GALLGAVNGVLIGYLRLRAFITTLITLIIYRSA+DLLIQRYSN+IA+AFPDIPSW+FIGG Sbjct: 121 GALLGAVNGVLIGYLRLRAFITTLITLIIYRSAYDLLIQRYSNAIASAFPDIPSWDFIGG 180 Query: 181 GDVFGIPSVALVYIAIAIFGHIFMTRLRPGWHITAIGGSRRSAYNSGIPVRRTIALCYVA 240 G +FGIP+VALVYI IAIFGHIFMTRLRPGWHITAIGGSRRSAYNSGIPVRRTIALCYVA Sbjct: 181 GSIFGIPTVALVYIVIAIFGHIFMTRLRPGWHITAIGGSRRSAYNSGIPVRRTIALCYVA 240 Query: 241 SGVLTSIAALF 251 SGVLTSI ALF Sbjct: 241 SGVLTSIGALF 251 >ref|YP_998272.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] gb|ABM59254.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] Length = 704 Score = 311 bits (797), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 163/249 (65%), Positives = 199/249 (79%) Query: 3 MRDTLTSLRYRYWPDHLLGEILSKRWTETAIPVILLLIVGFALSRSIDHFLSPSGLADTA 62 M +TLT LRYRYWPDH +GE+LSKRWTE+AIPV+LL+ V A + I +F SP LADT Sbjct: 1 MNETLTRLRYRYWPDHWVGELLSKRWTESAIPVLLLVAVLLASEQLIPNFHSPVMLADTL 60 Query: 63 RQAGEIGFIGLGMALVVIVGGIDLSVGSIFALTDFCALYLLDVLNWPVPAVVVATLVCGA 122 RQAGEIG I LG+ALV+IVGGIDLSVGSIFALT+FCAL + VL WP+ A V+ TL+ GA Sbjct: 61 RQAGEIGLIVLGLALVMIVGGIDLSVGSIFALTNFCALMCMHVLKWPMAASVLVTLLAGA 120 Query: 123 LLGAVNGVLIGYLRLRAFITTLITLIIYRSAFDLLIQRYSNSIAAAFPDIPSWNFIGGGD 182 LLGAVNG+LIGYL+LRAF+TTLITLII+RS +++L +YS +IA A PD +W+F+G G Sbjct: 121 LLGAVNGLLIGYLQLRAFLTTLITLIIFRSIYEILSLQYSTAIAGAVPDSAAWDFLGNGT 180 Query: 183 VFGIPSVALVYIAIAIFGHIFMTRLRPGWHITAIGGSRRSAYNSGIPVRRTIALCYVASG 242 + G+P+VA VY +AI GH+ +TRLR GWHI AIGGSRRSAYN GI VRRT+ALCY+ SG Sbjct: 181 LLGLPTVAWVYAVVAIGGHVLLTRLRIGWHIMAIGGSRRSAYNGGIAVRRTVALCYLTSG 240 Query: 243 VLTSIAALF 251 +L A F Sbjct: 241 LLCGAAGCF 249 >ref|ZP_05843366.1| inner-membrane translocator [Rhodobacter sp. SW2] gb|EEW25584.1| inner-membrane translocator [Rhodobacter sp. SW2] Length = 707 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 115/251 (45%), Positives = 158/251 (62%) Query: 1 MPMRDTLTSLRYRYWPDHLLGEILSKRWTETAIPVILLLIVGFALSRSIDHFLSPSGLAD 60 M +R+ L + RY PDHL+GEIL+KRWT+ AIP + L++ I F P L + Sbjct: 1 MTLRERLQAWRYNLVPDHLIGEILTKRWTDNAIPFLALVVTVATFGTLIPGFFKPLSLQE 60 Query: 61 TARQAGEIGFIGLGMALVVIVGGIDLSVGSIFALTDFCALYLLDVLNWPVPAVVVATLVC 120 + RQ GE + +G+ +V++ GGIDL+VGSIFAL+ F A+ + PV A+L Sbjct: 61 STRQLGEFSLVVIGLTVVMLGGGIDLAVGSIFALSAFAAVSCFFIFELPVWVAFAASLAV 120 Query: 121 GALLGAVNGVLIGYLRLRAFITTLITLIIYRSAFDLLIQRYSNSIAAAFPDIPSWNFIGG 180 GA GA+NG LIGYLRLRAF+TTL+T II R+ +D+L+ +++ + + P W+FIG Sbjct: 121 GAAFGAINGYLIGYLRLRAFLTTLVTFIIGRAIYDILVVAFASRVQMSSATSPIWDFIGD 180 Query: 181 GDVFGIPSVALVYIAIAIFGHIFMTRLRPGWHITAIGGSRRSAYNSGIPVRRTIALCYVA 240 G GI +AI HI +TR RPGWH+ A+GGSRRSAYN+GI VRRT+ L YV Sbjct: 181 GTALGISVPVWAAFGLAIVTHIALTRSRPGWHVLAVGGSRRSAYNAGIKVRRTVFLTYVF 240 Query: 241 SGVLTSIAALF 251 SG+ + A Sbjct: 241 SGLTAATAGFL 251 >ref|YP_001240758.1| ABC transporter [Bradyrhizobium sp. BTAi1] gb|ABQ36852.1| monosaccharide ABC transporter membrane protein, CUT2 family [Bradyrhizobium sp. BTAi1] Length = 707 Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 119/255 (46%), Positives = 169/255 (66%), Gaps = 8/255 (3%) Query: 1 MPMRDTLTSLRYRYWPDHLLGEILSKRWTETAIPVILLLIVGFALSRSIDHFLSPSGLAD 60 M T T LRYR+ PDH++GE+LSK+W + AIP ++LL V I +F + LA Sbjct: 1 MASTHTFTKLRYRFIPDHVIGELLSKKWIDNAIPFLVLLCVIAIFGSLIPNFFGGANLAI 60 Query: 61 TARQAGEIGFIGLGMALVVIVGGIDLSVGSIFALTDFCALYLLDVLNWPV----PAVVVA 116 +AR+ GE G + + M +V+IVGGIDLSVGS FAL +F L LL++ WPV PAVV Sbjct: 61 SARELGEFGLVCMAMMVVIIVGGIDLSVGSNFALGNFMTLALLNLGGWPVGLAIPAVV-- 118 Query: 117 TLVCGALLGAVNGVLIGYLRLRAFITTLITLIIYRSAFDLLIQRYSNSIAAAFPDIPSWN 176 L+CG +G +NG LIG+LRLRAF+TTL+TLII R+ D+L+ +Y+ +++ +F W+ Sbjct: 119 -LICGG-VGLLNGYLIGFLRLRAFLTTLVTLIIVRAIVDMLLLKYAQAMSVSFYQSDVWD 176 Query: 177 FIGGGDVFGIPSVALVYIAIAIFGHIFMTRLRPGWHITAIGGSRRSAYNSGIPVRRTIAL 236 IG G V +PS ++ + +A+ GH+ +TR RPGW + AIGGSRRSA+N G+ VR + Sbjct: 177 MIGLGGVAEVPSSFIILVIVALIGHVLLTRSRPGWRMMAIGGSRRSAHNIGLSVRGMVCA 236 Query: 237 CYVASGVLTSIAALF 251 Y SG+L +A + Sbjct: 237 AYTISGMLCGLAGVL 251 >ref|NP_103243.1| permease protein of sugar ABC transporter [Mesorhizobium loti MAFF303099] dbj|BAB49029.1| permease protein of sugar ABC transporter [Mesorhizobium loti MAFF303099] Length = 707 Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 113/254 (44%), Positives = 158/254 (62%) Query: 1 MPMRDTLTSLRYRYWPDHLLGEILSKRWTETAIPVILLLIVGFALSRSIDHFLSPSGLAD 60 M R+ L S RY PDHL+GEIL+KRWT+ AIP + L++ I F + L + Sbjct: 1 MSFRERLQSWRYNLVPDHLVGEILTKRWTDNAIPFLALVVTLATFGSIIPGFFKLNALQE 60 Query: 61 TARQAGEIGFIGLGMALVVIVGGIDLSVGSIFALTDFCALYLLDVLNWPVPAVVVATLVC 120 + RQ GE + GM +V++ GGIDLSVGSIFAL+ F A+Y+ +L + + A+L Sbjct: 61 STRQLGEFSMVVTGMTVVMLGGGIDLSVGSIFALSCFSAVYVFFILEQSIWLALAASLAT 120 Query: 121 GALLGAVNGVLIGYLRLRAFITTLITLIIYRSAFDLLIQRYSNSIAAAFPDIPSWNFIGG 180 G + GA+NG L+GYLRLRAF+TTL+T I R+ FD+L+ Y+ + + +FIG Sbjct: 121 GLIFGAINGYLVGYLRLRAFLTTLVTFIFGRALFDILVTTYAADVQLSTATSDVLDFIGD 180 Query: 181 GDVFGIPSVALVYIAIAIFGHIFMTRLRPGWHITAIGGSRRSAYNSGIPVRRTIALCYVA 240 +G+ + I +AI HI +TR RPGWH+ A+GGSRRSA+N+GI VRRT+ + YV Sbjct: 181 STFWGLSVSVWLAIILAIVTHIALTRSRPGWHVLAVGGSRRSAHNAGIRVRRTVFMTYVF 240 Query: 241 SGVLTSIAALFXSC 254 SG SI +C Sbjct: 241 SGFCASIGGFLIAC 254