BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0123.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002232789.1| hypothetical protein BCAM0157 [Burkholderia ...    77   7e-13
ref|ZP_02369671.1| hypothetical protein BthaT_01595 [Burkholderi...    77   7e-13
ref|ZP_04942684.1| hypothetical protein BCPG_04227 [Burkholderia...    76   2e-12
ref|YP_001777963.1| hypothetical protein Bcenmc03_4328 [Burkhold...    73   1e-11
ref|YP_259159.1| hypothetical protein PFL_2040 [Pseudomonas fluo...    72   2e-11

>ref|YP_002232789.1| hypothetical protein BCAM0157 [Burkholderia cenocepacia J2315]
 emb|CAR54014.1| putative exported protein [Burkholderia cenocepacia J2315]
          Length = 125

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 4/113 (3%)

Query: 15  LILGAPGAT--VHAQTPSNCKEPQTGTSR-VPMLSPPLANVVTGTGRLQFYSAPNLHCPI 71
           L+LGA  A    HA    +C +    TS       PP +  V GTGR  FYSAP+  C  
Sbjct: 14  LVLGASLAASGAHATRAVDCGQLDAATSGPDDNFRPPASGTVIGTGRAYFYSAPDAQCMT 73

Query: 72  RGVFVIPNDALIAYAQTRDGWSSVMYLNPGTGNDVSGWVRSARLKVTGTVGPK 124
           +  F++P D++  Y ++   W ++MY+N  TG+D  GWV   R+++ G  G +
Sbjct: 74  KRTFIVPGDSVTVY-KSHGRWYNIMYVNGKTGDDFEGWVEQGRVRLDGRYGAQ 125


>ref|ZP_02369671.1| hypothetical protein BthaT_01595 [Burkholderia thailandensis TXDOH]
          Length = 142

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 14  ALILGAPGATVHAQTPSNCKEPQTGTSRVP-MLSPPLANVVTGTGRLQFYSAPNLHCPIR 72
           AL  G     VHA+   +C+   + TS       PPL+  VTG+GR  F+SAP   C  R
Sbjct: 31  ALCAGFAATNVHAKDAVDCRRLNSATSGPDGNFRPPLSATVTGSGRAYFHSAPASACVTR 90

Query: 73  GVFVIPNDALIAYAQTRDGWSSVMYLNPGTGNDVSGWVRSARLKVTGTVG 122
            +FV+P D +  Y   +  W  VMY+N  TG D  GWV  +RL+   ++G
Sbjct: 91  RIFVVPGDIVTVYKPYQH-WYQVMYVNGKTGEDFEGWVEESRLRPGASLG 139


>ref|ZP_04942684.1| hypothetical protein BCPG_04227 [Burkholderia cenocepacia PC184]
 gb|EAY65855.1| hypothetical protein BCPG_04227 [Burkholderia cenocepacia PC184]
          Length = 124

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 17  LGAPGATVHAQTPSNCKEPQTGTSR-VPMLSPPLANVVTGTGRLQFYSAPNLHCPIRGVF 75
           LGA GA   A++  +C +    TS       PP +  V GTGR  FYSAP+  C  +  F
Sbjct: 19  LGANGA--QAKSTVDCGKLDAATSGPDDNFRPPASGTVIGTGRAYFYSAPDAQCITKRTF 76

Query: 76  VIPNDALIAYAQTRDGWSSVMYLNPGTGNDVSGWVRSARLKVTGTVGPK 124
           ++P D++  Y ++   W  +MY+N  TG+D  GWV   R+++ G  G +
Sbjct: 77  IVPGDSVTVY-KSHGRWHDIMYVNGKTGDDFEGWVEQGRVRLGGQYGAQ 124


>ref|YP_001777963.1| hypothetical protein Bcenmc03_4328 [Burkholderia cenocepacia MC0-3]
 gb|ACA93473.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
          Length = 123

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 15  LILGAPGATVHAQTPS--NCKEPQTGTSR-VPMLSPPLANVVTGTGRLQFYSAPNLHCPI 71
           L+LGA      AQ  S  +C +    TS       PP +  V GTGR  FYSAP+  C  
Sbjct: 12  LVLGASLDANGAQAKSTVDCGKLDAATSGPDDNFRPPASGTVIGTGRAYFYSAPDAQCIT 71

Query: 72  RGVFVIPNDALIAYAQTRDGWSSVMYLNPGTGNDVSGWVRSARLKVTGTVGPK 124
           +  F++P D++  Y ++   W  +MY+N  TG++  GWV   R+++ G  G +
Sbjct: 72  KRTFIVPGDSVTVY-KSHGRWYDIMYVNGKTGDEFEGWVEQGRVRLGGQYGAQ 123


>ref|YP_259159.1| hypothetical protein PFL_2040 [Pseudomonas fluorescens Pf-5]
 gb|AAY91326.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 212

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 47  PPLANVVTGTGRLQFYSAPNLHCPIRGVFVIPNDALIAYAQTRDGWSSVMYLNPGTGNDV 106
           PPL   V G GRL F+S PN  C  + ++VIP D L  YA + DGW+ VMY+    G D 
Sbjct: 62  PPLEAKVVGQGRLHFHSGPNATCLNKKLYVIPGDGLTVYASSGDGWAQVMYI-AKDGEDY 120

Query: 107 SGWVRSARLKVTGTVG 122
           +GWV   RL +    G
Sbjct: 121 TGWVEEKRLLLGKHYG 136