BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0115.p         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001924788.1| hypothetical protein Mpop_2091 [Methylobacte...    94   5e-18
ref|ZP_06890449.1| conserved hypothetical protein [Methylosinus ...    58   4e-07
ref|YP_002495175.1| hypothetical protein Mnod_8603 [Methylobacte...    56   2e-06
ref|ZP_01036960.1| hypothetical protein ROS217_08705 [Roseovariu...    52   2e-05
ref|YP_003888376.1| hypothetical protein Cyan7822_3147 [Cyanothe...    48   6e-04

>ref|YP_001924788.1| hypothetical protein Mpop_2091 [Methylobacterium populi BJ001]
 gb|ACB80253.1| hypothetical protein Mpop_2091 [Methylobacterium populi BJ001]
          Length = 137

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)

Query: 12  DVDWITRLGADSAVWIVVTGDHRIRKNKAERAAWIKAGLKAFVLAPSYQKTPINQAASVL 71
           D +WI  L      W+ VTGD R+ KNKAERAA+ +AGLK  VLAP+YQ+TP+NQ AS L
Sbjct: 44  DFEWIAYLAGTGDEWLTVTGDGRLHKNKAERAAFRQAGLKGIVLAPAYQRTPLNQQASFL 103

Query: 72  LWRWPDMEQFISRAAAGSMFELSVNRKTGFTPLAV 106
           +WRWP+++  + + A   +FE+ +   +G   L +
Sbjct: 104 IWRWPEIQSLL-KLAPPFLFEVPMRNASGIRQLPL 137


>ref|ZP_06890449.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
 gb|EFH01070.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
          Length = 133

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 6   FDHNTRDVDWITRLGADSAVWIVVTGDHRIRKNKAERAAWIKAGLKAFVLAPSYQKTPIN 65
           F  + +D++WI  L  +   W++++ D RI KNKAE   +  + L  F ++ +  K+ + 
Sbjct: 34  FGPSVKDIEWIEALSREGR-WVIISADRRITKNKAEYHVFRNSRLIGFFMSRALYKSKLT 92

Query: 66  QAASVLLWRWPDMEQFISRAAAGSMFELSVNRKTGFTPL 104
           + A  LL  W  M    +R   G+MFEL +   T F  L
Sbjct: 93  KQAERLLAVWDGMIDLATRVEGGAMFELPMKSTTRFPQL 131


>ref|YP_002495175.1| hypothetical protein Mnod_8603 [Methylobacterium nodulans ORS 2060]
 gb|ACL62683.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 130

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 10  TRDVDWITRLGADSAVWIVVTGDHRIRKNKAERAAWIKAGLKAFVLAPSYQKTPINQAAS 69
            +D+DWI  L +    W+V++G   I+K KAE   +  +    F LAP   K P+ + A 
Sbjct: 38  VKDIDWIPDL-SKQGRWVVISGGRAIKKKKAEYHVFRSSRSVGFFLAPGLLKAPLIKQAE 96

Query: 70  VLLWRWPDMEQFISRAAAGSMFELSVN 96
            +L  W  +E F + +A G+M+E+ ++
Sbjct: 97  RILANWEGIETFAAGSAPGAMYEIHMS 123


>ref|ZP_01036960.1| hypothetical protein ROS217_08705 [Roseovarius sp. 217]
 gb|EAQ24317.1| hypothetical protein ROS217_08705 [Roseovarius sp. 217]
          Length = 123

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 6   FDHNTRDVDWITRLGADSAVWIVVTGDHRIRKNKAERAAWIKAGLKAFVLAPSYQKTPIN 65
           F     D++    LG  +  W+V++ D    K   ERAA + +G+ A  LAPS +K P+ 
Sbjct: 27  FPVTITDIELYQHLG-RAGEWVVISKDVAQAKRPPERAAILNSGVVAIFLAPSVEKLPVY 85

Query: 66  QAASVLLWRWPDMEQFISRAAAGSMFELSVNRKTGFTPL 104
           Q A+ +LW+W  + +     A G +F L +N+ + F  L
Sbjct: 86  QQAATILWQWGAIIRQRETQANG-LFLLPMNKGSKFRSL 123


>ref|YP_003888376.1| hypothetical protein Cyan7822_3147 [Cyanothece sp. PCC 7822]
 gb|ADN15101.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
          Length = 146

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 6   FDHNTRDVDWITRLGADSAVWIVVTGDHRIRKNKAERAAWIKAGLKAFVLAPSYQKTPIN 65
           F++N +DV+W+  +G     W+V+T D +I KN  E+ A   AG+K F LA      P  
Sbjct: 38  FENNAQDVEWLPEVGKKG--WVVLTKDAKIGKNNTEQLAVAYAGIKMFALASQNLSGP-- 93

Query: 66  QAASVLLWRWPDMEQFISRAAA 87
             A + L     M++F+ +  A
Sbjct: 94  DMAQIFLATIVKMQEFVRQNPA 115