BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0107.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06889180.1| conserved hypothetical protein [Methylosinus ... 574 e-162 ref|YP_004696497.1| AAA ATPase [Nitrosomonas sp. Is79A3] >gi|338... 457 e-126 ref|YP_004293343.1| AAA ATPase [Nitrosomonas sp. AL212] >gi|3255... 456 e-126 ref|YP_004126302.1| hypothetical protein Alide_1658 [Alicycliphi... 438 e-120 ref|YP_002536682.1| ATPase [Geobacter sp. FRC-32] >gi|221563609|... 424 e-116 >ref|ZP_06889180.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] gb|EFH02311.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] Length = 408 Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust. Identities = 275/397 (69%), Positives = 331/397 (83%), Gaps = 4/397 (1%) Query: 9 NLFKKAKVDPVANPYAPGAGSQPPELAGRSEIVSRTETTLARVKAGRHAKSFMLVGLRGV 68 N K +D V NPYAPGAGSQPPELAGR E++ +T+TTLARVK GR AKSFMLVGLRGV Sbjct: 14 NKIGKVAMDAVTNPYAPGAGSQPPELAGRDELIQKTKTTLARVKMGRQAKSFMLVGLRGV 73 Query: 69 GKTVLLNRIAQIAEDDGYTATVIEAPEGKSLPELLIPCLRKILFQLDTKEKVTVAVKRGM 128 GKTVLLN+I +IAE GY A ++E+PEGKSLPELLIPCLRKILF+LDTKE V +VKRGM Sbjct: 74 GKTVLLNKIQEIAEKSGYVAILLESPEGKSLPELLIPCLRKILFKLDTKEMVNESVKRGM 133 Query: 129 MVLKSFAKAVKVTVGEVEIGLDIDAEKGTGDSGDLDTDLADLFEVIGAAAKARNTAVAII 188 MVL+SF VKV +IG +D E G+ DSGDL+ DL DL E IG AAK+R ++VAII Sbjct: 134 MVLRSFISTVKVNWEGFDIG--VDPEVGSADSGDLEADLPDLVEAIGVAAKSRQSSVAII 191 Query: 189 IDELQYIKETEFSALIMAVHRISQKQLPLIVIGAGLPQLVGLAGKAKSYAERLFDYPEVD 248 IDELQY+ E EFSALIMA+HR++QKQLP+++I AGLPQLVGLAG++KSYAERLFDYP++D Sbjct: 192 IDELQYVPEVEFSALIMAMHRVAQKQLPIVLIAAGLPQLVGLAGRSKSYAERLFDYPKID 251 Query: 249 ALNEKDAASALKEPAKREGVDWQPQALKLAVQLTRGYPYFLQEWGYHSWNAAKDGSGKIT 308 L+ +DAA+AL EPA+REGV ++ A+ ++LT+GYPYFLQEWGYH+WN A++ IT Sbjct: 252 KLSYEDAATALLEPARREGVSFEQSAVDSVIRLTQGYPYFLQEWGYHAWNIAQNSP--IT 309 Query: 309 TRDVRAASDAARSNLDDSFFRVRFDRVSPREKDYMFAMAALGPGAHRSGDIATELGVPVE 368 DV AS A NLD+SFFRVRFDR++PREKDY+FAMAALGPG HRSGD+A+ELGV VE Sbjct: 310 KADVEQASATALKNLDESFFRVRFDRLTPREKDYLFAMAALGPGPHRSGDVASELGVFVE 369 Query: 369 SVAPVRSSLIKKGMVYSPAHGDTAFTVPMFNEYLIRI 405 S+APVRSSLIKKGM++SPAHGDTAFTVP+F+EYL R+ Sbjct: 370 SIAPVRSSLIKKGMIFSPAHGDTAFTVPLFDEYLKRV 406 >ref|YP_004696497.1| AAA ATPase [Nitrosomonas sp. Is79A3] gb|AEJ03098.1| AAA ATPase [Nitrosomonas sp. Is79A3] Length = 399 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/389 (57%), Positives = 289/389 (74%), Gaps = 2/389 (0%) Query: 16 VDPVANPYAPGAGSQPPELAGRSEIVSRTETTLARVKAGRHAKSFMLVGLRGVGKTVLLN 75 +D + NP++PGAG+ PPELAGRS ++ R + LARV+ GR KS +LVGLRGVGKTVLLN Sbjct: 1 MDEIRNPFSPGAGTPPPELAGRSALIDRIKLLLARVREGRPGKSALLVGLRGVGKTVLLN 60 Query: 76 RIAQIAEDDGYTATVIEAPEGKSLPELLIPCLRKILFQLDTKEKVTVAVKRGMMVLKSFA 135 + +AE GY ++EA E KSL LL P LRK+L LD E V+ V+RG+ VLK F Sbjct: 61 ELENLAEQIGYKTILVEAHESKSLTALLAPSLRKLLLSLDRMENVSNKVRRGLRVLKGFV 120 Query: 136 KAVKVTVGEVEIGLDIDAEKGTGDSGDLDTDLADLFEVIGAAAKARNTAVAIIIDELQYI 195 VK+TVG++EIGLDI+AE GT DSGDL+ DL +LF + AA+ R VAI++DE+QY+ Sbjct: 121 NGVKITVGDLEIGLDIEAEAGTADSGDLEADLPELFIAVAEAAQDRKIPVAILLDEIQYL 180 Query: 196 KETEFSALIMAVHRISQKQLPLIVIGAGLPQLVGLAGKAKSYAERLFDYPEVDALNEKDA 255 E SALIMA+H+++QK+LPL++IGAGLP L GLAG +KSYAERLFD+PEV L DA Sbjct: 181 SAKELSALIMAMHKMAQKRLPLVLIGAGLPVLAGLAGDSKSYAERLFDFPEVGPLAPDDA 240 Query: 256 ASALKEPAKREGVDWQPQALKLAVQLTRGYPYFLQEWGYHSWNAAKDGSGKITTRDVRAA 315 AL+EPA++EG D+ +AL ++LT+GYPYFLQEWGY SWN A ++ DV+ A Sbjct: 241 RQALREPAQKEGADFTDEALDEIIRLTQGYPYFLQEWGYQSWNYAPQSPVQLA--DVKHA 298 Query: 316 SDAARSNLDDSFFRVRFDRVSPREKDYMFAMAALGPGAHRSGDIATELGVPVESVAPVRS 375 + LD +FFRVRFDR++PREKDY+ A+A LG RSGD+A LGV V++VAP+R Sbjct: 299 TPRIIERLDANFFRVRFDRLTPREKDYLRALAELGAEPQRSGDVAAVLGVKVQTVAPLRD 358 Query: 376 SLIKKGMVYSPAHGDTAFTVPMFNEYLIR 404 SL+KKGM+YSPAHGDTAFTVP+F+ ++ R Sbjct: 359 SLMKKGMIYSPAHGDTAFTVPLFDTFMKR 387 >ref|YP_004293343.1| AAA ATPase [Nitrosomonas sp. AL212] gb|ADZ25181.1| AAA ATPase [Nitrosomonas sp. AL212] Length = 399 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/389 (57%), Positives = 289/389 (74%), Gaps = 2/389 (0%) Query: 16 VDPVANPYAPGAGSQPPELAGRSEIVSRTETTLARVKAGRHAKSFMLVGLRGVGKTVLLN 75 +D + NP++PGAG+ PPELAGRS ++ R + LARV+ GR KS +LVGLRGVGKTVLLN Sbjct: 1 MDEIRNPFSPGAGTPPPELAGRSALIDRIKLLLARVREGRPGKSALLVGLRGVGKTVLLN 60 Query: 76 RIAQIAEDDGYTATVIEAPEGKSLPELLIPCLRKILFQLDTKEKVTVAVKRGMMVLKSFA 135 + +AE GY ++EA E KSL LL P LRK+L LD E V+ V+RG+ VLK F Sbjct: 61 ELENLAEQVGYKTILVEAHESKSLTALLAPSLRKLLLSLDRMENVSNKVRRGLRVLKGFV 120 Query: 136 KAVKVTVGEVEIGLDIDAEKGTGDSGDLDTDLADLFEVIGAAAKARNTAVAIIIDELQYI 195 VK+T+G++EIGLDI+AE GT DSGDL+ DL +LF + AA+ R VAI++DE+QY+ Sbjct: 121 NGVKITLGDLEIGLDIEAEAGTADSGDLEADLPELFIAVAEAAQDRKIPVAILLDEIQYL 180 Query: 196 KETEFSALIMAVHRISQKQLPLIVIGAGLPQLVGLAGKAKSYAERLFDYPEVDALNEKDA 255 E SALIMA+H+++QK+LPL++IGAGLP L GLAG +KSYAERLFD+PEV L +DA Sbjct: 181 SAKELSALIMAMHKMAQKRLPLVLIGAGLPVLAGLAGDSKSYAERLFDFPEVGPLAPEDA 240 Query: 256 ASALKEPAKREGVDWQPQALKLAVQLTRGYPYFLQEWGYHSWNAAKDGSGKITTRDVRAA 315 AL+EPA++EG D+ AL ++LT+GYPYFLQEWGY SWN A ++ DV+ A Sbjct: 241 RQALREPAQKEGADFTDAALDEIIRLTQGYPYFLQEWGYQSWNHAPQSPVQLA--DVKRA 298 Query: 316 SDAARSNLDDSFFRVRFDRVSPREKDYMFAMAALGPGAHRSGDIATELGVPVESVAPVRS 375 + LD +FFRVRFDR++PREKDY+ A+A LG RSGD+A LGV V++VAP+R Sbjct: 299 TPRIIERLDANFFRVRFDRLTPREKDYLRALAELGAEPQRSGDVAAVLGVKVQTVAPLRD 358 Query: 376 SLIKKGMVYSPAHGDTAFTVPMFNEYLIR 404 SL+KKGM+YSPAHGDTAFTVP+F+ ++ R Sbjct: 359 SLMKKGMIYSPAHGDTAFTVPLFDTFMKR 387 >ref|YP_004126302.1| hypothetical protein Alide_1658 [Alicycliphilus denitrificans BC] gb|ADU99414.1| hypothetical protein Alide_1658 [Alicycliphilus denitrificans BC] Length = 395 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 220/390 (56%), Positives = 281/390 (72%), Gaps = 4/390 (1%) Query: 16 VDPVANPYAPGAGSQPPELAGRSEIVSRTETTLARVKAGRHAKSFMLVGLRGVGKTVLLN 75 +D NPY PGAG+ PPELAGR E++ R E L R++ GR +KS ++VGLRGVGKTVLL Sbjct: 1 MDARDNPYVPGAGTPPPELAGRHEVLERAEVALTRIQRGRPSKSLIVVGLRGVGKTVLLV 60 Query: 76 RIAQIAEDDGYTATVIEAPEGKSLPELLIPCLRKILFQLDTKEKVTVAVKRGMMVLKSFA 135 R A D GY A +IEA EGK+LPELL+P LRKIL L + ++ + L+SF Sbjct: 61 RFQNQAIDLGYQAALIEAHEGKTLPELLVPPLRKILLSLSALKAAGEKGRQALRALRSFM 120 Query: 136 KAVKVTVGEVEIGLDIDAEKGTGDSGDLDTDLADLFEVIGAAAKARNTAVAIIIDELQYI 195 VKV ++E+G ID G DSGDL+ DLADLF +G AA + TAVA+ IDE+QY+ Sbjct: 121 GTVKVKWSDIELG--IDPVMGVADSGDLEVDLADLFVAVGEAAAEKKTAVALCIDEMQYL 178 Query: 196 KETEFSALIMAVHRISQKQLPLIVIGAGLPQLVGLAGKAKSYAERLFDYPEVDALNEKDA 255 EFSALIMAVH++SQ LP++V+GAGLPQ++GLAG++KSYAERLFDYP+V AL+++DA Sbjct: 179 SNKEFSALIMAVHKVSQMNLPIVVVGAGLPQILGLAGESKSYAERLFDYPKVGALSKEDA 238 Query: 256 ASALKEPAKREGVDWQPQALKLAVQLTRGYPYFLQEWGYHSWNAAKDGSGKITTRDVRAA 315 A++ PAK V + +AL V +T+GYPYFLQ+WGY WN A+ S IT DV A Sbjct: 239 VLAIETPAKNMEVFYDTEALNRLVAVTKGYPYFLQQWGYEVWNIAE--SSPITLDDVDQA 296 Query: 316 SDAARSNLDDSFFRVRFDRVSPREKDYMFAMAALGPGAHRSGDIATELGVPVESVAPVRS 375 ++AA + LD+SFFRVRFDR +P EK YM A+A LG G+ RSGDIA LGV V S+ P RS Sbjct: 297 TEAAIAALDESFFRVRFDRCTPSEKRYMRALAELGEGSKRSGDIADCLGVKVTSIGPTRS 356 Query: 376 SLIKKGMVYSPAHGDTAFTVPMFNEYLIRI 405 LI KGM+YSP HG+TAFTVP+F+EY+ R+ Sbjct: 357 KLITKGMIYSPQHGETAFTVPLFDEYMRRV 386 >ref|YP_002536682.1| ATPase [Geobacter sp. FRC-32] gb|ACM19581.1| ATPase [Geobacter sp. FRC-32] Length = 394 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/389 (53%), Positives = 279/389 (71%), Gaps = 2/389 (0%) Query: 16 VDPVANPYAPGAGSQPPELAGRSEIVSRTETTLARVKAGRHAKSFMLVGLRGVGKTVLLN 75 +D + NP++PGAGS PPELAGR+ I+ + E L RV A R KS +L GLRGVGKTVLLN Sbjct: 1 MDKIKNPFSPGAGSPPPELAGRNAILEQAEVLLGRVLARRPEKSLLLTGLRGVGKTVLLN 60 Query: 76 RIAQIAEDDGYTATVIEAPEGKSLPELLIPCLRKILFQLDTKEKVTVAVKRGMMVLKSFA 135 I + A++ GY ++EA EGKSL LL P LR++LF LD +RG+ VLKSF Sbjct: 61 EIERRAKNIGYRTILVEAHEGKSLAVLLAPHLRRLLFDLDRIAGAGDKARRGLAVLKSFV 120 Query: 136 KAVKVTVGEVEIGLDIDAEKGTGDSGDLDTDLADLFEVIGAAAKARNTAVAIIIDELQYI 195 A+K+++GE +IGLDI+ E G DSGDL+ DL LF + AA+ R AV I+IDE+QY Sbjct: 121 GAIKISMGEFDIGLDIEPESGAADSGDLEVDLPSLFMTVAEAAQERGVAVTILIDEIQYF 180 Query: 196 KETEFSALIMAVHRISQKQLPLIVIGAGLPQLVGLAGKAKSYAERLFDYPEVDALNEKDA 255 K+ E SALIMA+H++ Q QLPL++IGAGLP L GLAG++KSYAERLF++PEV L E DA Sbjct: 181 KQLELSALIMAMHKMQQSQLPLVLIGAGLPILPGLAGESKSYAERLFNFPEVGPLPEPDA 240 Query: 256 ASALKEPAKREGVDWQPQALKLAVQLTRGYPYFLQEWGYHSWNAAKDGSGKITTRDVRAA 315 AL++P + ++ P AL +LT+GYPYFLQEWGY WN A + I+ + V+ A Sbjct: 241 NKALQDPVRAAHEEFAPDALAEIFRLTQGYPYFLQEWGYQVWNHAV--ASPISLQVVQEA 298 Query: 316 SDAARSNLDDSFFRVRFDRVSPREKDYMFAMAALGPGAHRSGDIATELGVPVESVAPVRS 375 SD LD++FFRVRFDR++PREK ++ AMA LG GA R+ D+A +L + + ++ P+R+ Sbjct: 299 SDLVSKRLDENFFRVRFDRLTPREKMFLRAMAELGGGACRTSDVADQLHIKISAMGPLRA 358 Query: 376 SLIKKGMVYSPAHGDTAFTVPMFNEYLIR 404 LIKKGM+YSP++GD AFTVP+F+E++ R Sbjct: 359 GLIKKGMIYSPSYGDVAFTVPLFDEFMRR 387