BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0099.p (467 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01048098.1| Signal transduction histidine kinase [Nitroba... 740 0.0 ref|YP_578892.1| histidine kinase [Nitrobacter hamburgensis X14]... 738 0.0 ref|YP_319677.1| Signal transduction histidine kinase [Nitrobact... 736 0.0 ref|NP_774735.1| two-component hybrid sensor and regulator [Brad... 735 0.0 ref|YP_530710.1| periplasmic sensor signal transduction histidin... 711 0.0 >ref|ZP_01048098.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gb|EAQ33929.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 492 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/462 (80%), Positives = 405/462 (87%), Gaps = 25/462 (5%) Query: 31 TIPLVMIAGLLIYVPAIANFRMNRLNDRLAAT-------------------------SIG 65 TIPLVMIA +LIYVP+IANFR+NRLNDRLAA SIG Sbjct: 31 TIPLVMIAEILIYVPSIANFRVNRLNDRLAAANTAALVLDAAPSGMVPDSLARQILGSIG 90 Query: 66 ARAVAIKLGQQRRLLASADLPAAIDHDVDMRTMTVWSAIVDAFEIMLEHGDQTIRVVGPA 125 ARAVAIK+GQQRRLLASADLPAAIDHD+DMRT+T WSAIV +FE MLE G+Q IR++GP Sbjct: 91 ARAVAIKMGQQRRLLASADLPAAIDHDIDMRTLTPWSAIVGSFETMLESGNQAIRIIGPG 150 Query: 126 PGQAQFIEVVIDEKPLRQAMYRFSRNVLVVALLIAGLTAGLVYLALHYLFVRPMRRLTAS 185 P AQFIEVV DE+PLRQ+MYRFSRN+L+V+L IA LTA LVYLALHYLFVRPMRRLTA+ Sbjct: 151 PRGAQFIEVVTDEEPLRQSMYRFSRNLLLVSLAIAILTAALVYLALHYLFVRPMRRLTAN 210 Query: 186 LVGFHENPESSARIIVPSQRGDEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINH 245 LVGFH+NPESSARIIVPSQRGDEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINH Sbjct: 211 LVGFHQNPESSARIIVPSQRGDEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINH 270 Query: 246 DLRNLLASSQLLSDQLASVPDPRVQRFAPKLLRSLERAIAFCQSTLSYGRAQEAAPDRRV 305 DLRNLLASSQLLSDQLASVPDPRVQRFAPKL+RSLERAIAFCQSTLSYGRAQEAAPDRR+ Sbjct: 271 DLRNLLASSQLLSDQLASVPDPRVQRFAPKLMRSLERAIAFCQSTLSYGRAQEAAPDRRL 330 Query: 306 IMVEPAVAEVRESAGLATDVSITWISAIERGLTIDADPDQLFRVLLNLVRNATQALESRP 365 + +EP V EVRESAGLA D SITWI+AIERGLT+DADPDQLFR+LLNLVRNA QALES+P Sbjct: 331 MAIEPVVNEVRESAGLAPDGSITWINAIERGLTVDADPDQLFRILLNLVRNAAQALESQP 390 Query: 366 ASDGGAQQIRITGRREGTVAIIEVSDTGPGVPAKAREHLFEAFQTSGRPGGSGLGLAIAA 425 +D +QIR+TGRREG VA IEVSDTGPGVP +AR HLFEAFQ S RPGGSGLGLAIAA Sbjct: 391 RNDVATRQIRVTGRREGAVAFIEVSDTGPGVPQQARNHLFEAFQGSVRPGGSGLGLAIAA 450 Query: 426 ELIRAHGGHIHLVEGTIGATFRISIPDRPVELLSIRSERARA 467 EL+RAHGG IHLVEGTIGATFRISIPDRPVEL +IR+ERARA Sbjct: 451 ELVRAHGGDIHLVEGTIGATFRISIPDRPVELQTIRNERARA 492 >ref|YP_578892.1| histidine kinase [Nitrobacter hamburgensis X14] gb|ABE64432.1| histidine kinase [Nitrobacter hamburgensis X14] Length = 492 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/462 (80%), Positives = 402/462 (87%), Gaps = 25/462 (5%) Query: 31 TIPLVMIAGLLIYVPAIANFRMNRLNDRLAAT-------------------------SIG 65 TIPLVMIA +LIYVPAIANFR NRLNDRLAA SIG Sbjct: 31 TIPLVMIAEILIYVPAIANFRANRLNDRLAAANTAALVLDAAPSGMVPDSLARQILGSIG 90 Query: 66 ARAVAIKLGQQRRLLASADLPAAIDHDVDMRTMTVWSAIVDAFEIMLEHGDQTIRVVGPA 125 ARAVAIK+GQQRRLLASADLPAAIDHD+DMRTMT WSAIV +FE MLE G+Q IR++GP Sbjct: 91 ARAVAIKMGQQRRLLASADLPAAIDHDIDMRTMTPWSAIVGSFETMLESGNQAIRIIGPG 150 Query: 126 PGQAQFIEVVIDEKPLRQAMYRFSRNVLVVALLIAGLTAGLVYLALHYLFVRPMRRLTAS 185 P AQFIEVV DE PLRQ+MYRFSRN+L+V+L IA LTA LVYLALHYLFVRPMRRLTA+ Sbjct: 151 PRGAQFIEVVTDELPLRQSMYRFSRNLLLVSLAIAVLTAALVYLALHYLFVRPMRRLTAN 210 Query: 186 LVGFHENPESSARIIVPSQRGDEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINH 245 LVGFH+NPESSARIIVPSQRGDEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINH Sbjct: 211 LVGFHQNPESSARIIVPSQRGDEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINH 270 Query: 246 DLRNLLASSQLLSDQLASVPDPRVQRFAPKLLRSLERAIAFCQSTLSYGRAQEAAPDRRV 305 DLRNLLASSQLLSDQLASVPDPRVQRFAPKL+RSLERAIAFCQSTLSYGRAQEAAP RR+ Sbjct: 271 DLRNLLASSQLLSDQLASVPDPRVQRFAPKLMRSLERAIAFCQSTLSYGRAQEAAPVRRM 330 Query: 306 IMVEPAVAEVRESAGLATDVSITWISAIERGLTIDADPDQLFRVLLNLVRNATQALESRP 365 + +EP V EVRESAGLA + SITWI+AIERGLTIDADPDQLFR+LLNLVRNA QALES+P Sbjct: 331 MAIEPVVNEVRESAGLAPEGSITWINAIERGLTIDADPDQLFRILLNLVRNAAQALESQP 390 Query: 366 ASDGGAQQIRITGRREGTVAIIEVSDTGPGVPAKAREHLFEAFQTSGRPGGSGLGLAIAA 425 SD +QIR+TGRREG V IIEVSDTGPGVP +AR HLFEAFQ S RPGGSGLGLAIAA Sbjct: 391 QSDAATRQIRVTGRREGAVTIIEVSDTGPGVPQQARNHLFEAFQGSVRPGGSGLGLAIAA 450 Query: 426 ELIRAHGGHIHLVEGTIGATFRISIPDRPVELLSIRSERARA 467 EL+RAHGG IHLVEGTIGATFRI+IPDRPVEL +IR+ERARA Sbjct: 451 ELVRAHGGDIHLVEGTIGATFRITIPDRPVELQAIRNERARA 492 >ref|YP_319677.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gb|ABA06325.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 492 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/462 (79%), Positives = 403/462 (87%), Gaps = 25/462 (5%) Query: 31 TIPLVMIAGLLIYVPAIANFRMNRLNDRLAAT-------------------------SIG 65 TIPLVMIA +LIYVP+IANFR+NRLNDRLAA SIG Sbjct: 31 TIPLVMIAEVLIYVPSIANFRVNRLNDRLAAANTAALVLDAAPSGMVPESLARQILGSIG 90 Query: 66 ARAVAIKLGQQRRLLASADLPAAIDHDVDMRTMTVWSAIVDAFEIMLEHGDQTIRVVGPA 125 ARAVAIK+GQQRRLLASADLPA+IDHD+DMRTMT WSAIV +FE MLE G+Q IR++GP Sbjct: 91 ARAVAIKMGQQRRLLASADLPASIDHDIDMRTMTPWSAIVGSFETMLESGNQAIRIIGPG 150 Query: 126 PGQAQFIEVVIDEKPLRQAMYRFSRNVLVVALLIAGLTAGLVYLALHYLFVRPMRRLTAS 185 P AQFIEVV DE+PLRQ+MYRFSRN+L+V+L IA LTA LVYLALHYLFVRPMRRLTA+ Sbjct: 151 PRGAQFIEVVTDEEPLRQSMYRFSRNLLLVSLAIAVLTAALVYLALHYLFVRPMRRLTAN 210 Query: 186 LVGFHENPESSARIIVPSQRGDEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINH 245 LVGFH+NPES ARIIVPSQRGDEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINH Sbjct: 211 LVGFHQNPESPARIIVPSQRGDEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINH 270 Query: 246 DLRNLLASSQLLSDQLASVPDPRVQRFAPKLLRSLERAIAFCQSTLSYGRAQEAAPDRRV 305 DLRNLLASSQLLSDQLASVPDPRVQRFAPKL+RSLERAIAFCQSTLSYGRAQEA PDRR+ Sbjct: 271 DLRNLLASSQLLSDQLASVPDPRVQRFAPKLMRSLERAIAFCQSTLSYGRAQEATPDRRL 330 Query: 306 IMVEPAVAEVRESAGLATDVSITWISAIERGLTIDADPDQLFRVLLNLVRNATQALESRP 365 + +EP V EVRESAGL + SITWI AIERGLTIDADPDQLFR+LLNLVRNA QALE++P Sbjct: 331 MAIEPIVNEVRESAGLTPEGSITWIDAIERGLTIDADPDQLFRILLNLVRNAAQALETQP 390 Query: 366 ASDGGAQQIRITGRREGTVAIIEVSDTGPGVPAKAREHLFEAFQTSGRPGGSGLGLAIAA 425 ++ +QIR+ GRREG VAIIEVSDTGPGVP +AR HLFEAFQ+SGRPGGSGLGLAIAA Sbjct: 391 RNEAATRQIRVAGRREGAVAIIEVSDTGPGVPEQARSHLFEAFQSSGRPGGSGLGLAIAA 450 Query: 426 ELIRAHGGHIHLVEGTIGATFRISIPDRPVELLSIRSERARA 467 EL+RAHGG IHLVEGTIGATFRI+IPDRPVEL +IR+ERARA Sbjct: 451 ELVRAHGGDIHLVEGTIGATFRITIPDRPVELQTIRNERARA 492 >ref|NP_774735.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC53360.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 504 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/487 (78%), Positives = 418/487 (85%), Gaps = 25/487 (5%) Query: 6 DQATAQKQRPKPSPRLGLSGKLLLLTIPLVMIAGLLIYVPAIANFRMNRLNDRLAAT--- 62 DQ RP+ LGLSGKLLLLT+PLVMIA +L+YVPAIANF +NRLNDR+AA Sbjct: 18 DQRDPPAMRPRGPAGLGLSGKLLLLTVPLVMIAAILLYVPAIANFWVNRLNDRVAAANTA 77 Query: 63 ----------------------SIGARAVAIKLGQQRRLLASADLPAAIDHDVDMRTMTV 100 SI ARAVAIK+GQQRRLLAS +LPAAI+HDVD+R MTV Sbjct: 78 ALVLDAAPLGMVPDSLSREILKSINARAVAIKMGQQRRLLASDNLPAAIEHDVDLRDMTV 137 Query: 101 WSAIVDAFEIMLEHGDQTIRVVGPAPGQAQFIEVVIDEKPLRQAMYRFSRNVLVVALLIA 160 W AI + ++MLE G+Q IR+VGP G AQF+E+V DE PLRQ+MYRFSRNV+VVAL+I Sbjct: 138 WEAITGSIQMMLETGNQAIRIVGPGVGNAQFVEIVTDELPLRQSMYRFSRNVVVVALIIG 197 Query: 161 GLTAGLVYLALHYLFVRPMRRLTASLVGFHENPESSARIIVPSQRGDEIGVAERELSDMQ 220 LTAGLVYLALHYLFVRPMRRLTASLVGFHENPESSARIIVPSQR DEIGVAERELSDMQ Sbjct: 198 VLTAGLVYLALHYLFVRPMRRLTASLVGFHENPESSARIIVPSQRSDEIGVAERELSDMQ 257 Query: 221 RDLVSMLHQKSRLAALGLAVSKINHDLRNLLASSQLLSDQLASVPDPRVQRFAPKLLRSL 280 RDL+SMLHQKSRLAALGLAVSKINHDLRNLLAS+QLLSDQLASVPDPRVQRFAPKL+RSL Sbjct: 258 RDLMSMLHQKSRLAALGLAVSKINHDLRNLLASAQLLSDQLASVPDPRVQRFAPKLVRSL 317 Query: 281 ERAIAFCQSTLSYGRAQEAAPDRRVIMVEPAVAEVRESAGLATDVSITWISAIERGLTID 340 ERAIAFCQSTLSYGRAQEA+PDRR+I++EP V EVRE+AGLA+D SI W++AIERGL +D Sbjct: 318 ERAIAFCQSTLSYGRAQEASPDRRMILIEPVVLEVRETAGLASDASIAWVAAIERGLAVD 377 Query: 341 ADPDQLFRVLLNLVRNATQALESRPASDGGAQQIRITGRREGTVAIIEVSDTGPGVPAKA 400 ADPDQLFRVLLNLVRNA QALES + DGGAQQIRITG+REG VAI+EVSDTGPGVP K Sbjct: 378 ADPDQLFRVLLNLVRNAAQALESHSSGDGGAQQIRITGKREGAVAILEVSDTGPGVPQKT 437 Query: 401 REHLFEAFQTSGRPGGSGLGLAIAAELIRAHGGHIHLVEGTIGATFRISIPDRPVELLSI 460 R+HLFEAFQTSGRPGGSGLGLAIAAEL+RAHGG IHLVEGTIGATFRI IPDRPVELLSI Sbjct: 438 RDHLFEAFQTSGRPGGSGLGLAIAAELVRAHGGDIHLVEGTIGATFRIVIPDRPVELLSI 497 Query: 461 RSERARA 467 R+ERARA Sbjct: 498 RNERARA 504 >ref|YP_530710.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gb|ABD86391.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 506 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/456 (78%), Positives = 395/456 (86%), Gaps = 26/456 (5%) Query: 37 IAGLLIYVPAIANFRMNRLNDRLAAT-------------------------SIGARAVAI 71 IA +LIYVPAIANFR+NRLNDRLAA SIGARAVAI Sbjct: 52 IAEILIYVPAIANFRLNRLNDRLAAANTAALVLDASPSGMVPESLARDILDSIGARAVAI 111 Query: 72 KLGQQRRLLASADLPAAIDHDVDMRTMTVWSAIVDAFEIMLEHGDQTIRVVGPAPGQAQF 131 K+GQQRRLLAS +LP IDHDVDMR++ W AIVD+F++M E G+Q IRV+GPAPG QF Sbjct: 112 KMGQQRRLLASGELPPQIDHDVDMRSVNPWEAIVDSFQVMFESGNQAIRVIGPAPGGGQF 171 Query: 132 IEVVIDEKPLRQAMYRFSRNVLVVALLIAGLTAGLVYLALHYLFVRPMRRLTASLVGFHE 191 +EVV+DE PLRQAMYRFS N+L+V+L IA LTA LVYLALH+LFV+PMRRLTA+LVGFH+ Sbjct: 172 LEVVVDELPLRQAMYRFSSNLLLVSLTIAILTAALVYLALHFLFVQPMRRLTANLVGFHQ 231 Query: 192 NPESSARIIVPSQRGDEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINHDLRNLL 251 NPES+A IIVP+QR DEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINHDLRNLL Sbjct: 232 NPESAANIIVPTQRTDEIGVAERELSDMQRDLVSMLHQKSRLAALGLAVSKINHDLRNLL 291 Query: 252 ASSQLLSDQLASVPDPRVQRFAPKLLRSLERAIAFCQSTLSYGRAQEAAPDRRVIMVEPA 311 ASSQLLSDQLASVPDPRVQRFAPKL+RSLERAIAFCQSTLSYGRAQEAAPDRR++++EP Sbjct: 292 ASSQLLSDQLASVPDPRVQRFAPKLMRSLERAIAFCQSTLSYGRAQEAAPDRRMLLIEPV 351 Query: 312 VAEVRESAGLATDVSITWISAIERGLTIDADPDQLFRVLLNLVRNATQALESRPASDGGA 371 VAEVRE+AGLA+D SITW+S+IERGLTIDADPDQLFRVLLNLVRNA QALE + SD G Sbjct: 352 VAEVRETAGLASDASITWVSSIERGLTIDADPDQLFRVLLNLVRNAAQALEGQ-QSDAGI 410 Query: 372 QQIRITGRREGTVAIIEVSDTGPGVPAKAREHLFEAFQTSGRPGGSGLGLAIAAELIRAH 431 QQIRITGRREG VAI+EVSDTGPG+P KAR HLFEAFQ S R GG+GLGLAIAAEL+RAH Sbjct: 411 QQIRITGRREGAVAIVEVSDTGPGLPQKARAHLFEAFQGSVRAGGTGLGLAIAAELVRAH 470 Query: 432 GGHIHLVEGTIGATFRISIPDRPVELLSIRSERARA 467 GG IHLVEGTIGATFRI+IPDRPVELL+IR ERARA Sbjct: 471 GGDIHLVEGTIGATFRITIPDRPVELLTIRGERARA 506