BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0096.p         (38 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01048101.1| putative inner membrane protein translocase c...    60   1e-07
ref|YP_319674.1| putative inner membrane protein translocase com...    58   4e-07
ref|NP_774738.1| inner membrane protein translocase component Yi...    56   2e-06
ref|YP_001202944.1| putative inner membrane protein translocase ...    55   5e-06
ref|YP_001243096.1| putative inner membrane protein translocase ...    54   1e-05

>ref|ZP_01048101.1| putative inner membrane protein translocase component YidC
           [Nitrobacter sp. Nb-311A]
 gb|EAQ33932.1| putative inner membrane protein translocase component YidC
           [Nitrobacter sp. Nb-311A]
          Length = 614

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 1   VLQQSYIMRRNGVKVELFDNLKSTFQKKSVTTETKKAT 38
           V+QQSYIMRRNGVKVELFDN+KSTF++K      KK T
Sbjct: 577 VIQQSYIMRRNGVKVELFDNVKSTFRRKPSDNPAKKTT 614


>ref|YP_319674.1| putative inner membrane protein translocase component YidC
           [Nitrobacter winogradskyi Nb-255]
 gb|ABA06322.1| protein translocase subunit yidC [Nitrobacter winogradskyi Nb-255]
          Length = 614

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/29 (86%), Positives = 29/29 (100%)

Query: 1   VLQQSYIMRRNGVKVELFDNLKSTFQKKS 29
           V+QQSYIMRRNGVKVELFDN+KSTF++KS
Sbjct: 578 VIQQSYIMRRNGVKVELFDNVKSTFRRKS 606


>ref|NP_774738.1| inner membrane protein translocase component YidC [Bradyrhizobium
           japonicum USDA 110]
 sp|Q89BQ0.1|OXAA_BRAJA RecName: Full=Inner membrane protein oxaA
 dbj|BAC53363.1| blr8098 [Bradyrhizobium japonicum USDA 110]
          Length = 616

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 28/29 (96%)

Query: 1   VLQQSYIMRRNGVKVELFDNLKSTFQKKS 29
           VLQQS+IMRRNGVKVELFDNLK+TF +K+
Sbjct: 587 VLQQSFIMRRNGVKVELFDNLKATFARKA 615


>ref|YP_001202944.1| putative inner membrane protein translocase component YidC
           [Bradyrhizobium sp. ORS 278]
 emb|CAL74706.1| Inner membrane protein oxaA [Bradyrhizobium sp. ORS 278]
          Length = 622

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/28 (82%), Positives = 27/28 (96%)

Query: 1   VLQQSYIMRRNGVKVELFDNLKSTFQKK 28
           VLQQS+IMRRNGVKVELFDN++ TF+KK
Sbjct: 593 VLQQSFIMRRNGVKVELFDNIRGTFRKK 620


>ref|YP_001243096.1| putative inner membrane protein translocase component YidC
           [Bradyrhizobium sp. BTAi1]
 gb|ABQ39190.1| protein translocase subunit yidC [Bradyrhizobium sp. BTAi1]
          Length = 621

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/29 (75%), Positives = 27/29 (93%)

Query: 1   VLQQSYIMRRNGVKVELFDNLKSTFQKKS 29
           VLQQ +IMRRNGVKVELFDN++ TF+KK+
Sbjct: 592 VLQQGFIMRRNGVKVELFDNIRGTFKKKA 620