BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0095.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_530706.1| ribosome biogenesis GTP-binding protein YsxC [R... 369 e-100 ref|ZP_08627470.1| GTP-binding protein EngB [Bradyrhizobiaceae b... 364 5e-99 ref|YP_779583.1| ribosome biogenesis GTP-binding protein YsxC [R... 357 6e-97 ref|NP_774739.1| ribosome biogenesis GTP-binding protein YsxC [B... 348 2e-94 ref|YP_578888.1| ribosome biogenesis GTP-binding protein YsxC [N... 348 4e-94 >ref|YP_530706.1| ribosome biogenesis GTP-binding protein YsxC [Rhodopseudomonas palustris BisB18] sp|Q21B49.1|ENGB_RHOPB RecName: Full=Probable GTP-binding protein EngB gb|ABD86387.1| GTP-binding [Rhodopseudomonas palustris BisB18] Length = 216 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/215 (82%), Positives = 191/215 (88%) Query: 1 MSTEHDAALIEQGRKLFAGDWRFIWASPSIETLPPMAGLEVAFAGRSNVGKSSLINALTG 60 M+ ++DA IEQGRKLFAGDW+FIWASPSIETLPPMAGLEVAFAGRSNVGKSSLINALTG Sbjct: 1 MTQDNDAKFIEQGRKLFAGDWQFIWASPSIETLPPMAGLEVAFAGRSNVGKSSLINALTG 60 Query: 61 RSNLARTSHTPGRTQELIFFEGPEKAGFRLVDMPGYGYASAPKTKVASWTALIHKFLLGR 120 R+ LARTSHTPGRTQELIFFEGPE A FRLVDMPGYGYASAPK K+ASWT+LIH FL GR Sbjct: 61 RNALARTSHTPGRTQELIFFEGPENANFRLVDMPGYGYASAPKAKIASWTSLIHNFLQGR 120 Query: 121 ATLARVYVLIDARHGIKDVDLDVLKTLDKSAVSYQVVLTKADQVKAGELKTVIADTSATL 180 +TLARVYVLIDARHG+K+VD DVL TLDKSAVSYQVVLTKADQVK EL D A L Sbjct: 121 STLARVYVLIDARHGLKEVDQDVLNTLDKSAVSYQVVLTKADQVKPAELAQCRIDVEAGL 180 Query: 181 AKHPAAFPEVLVTSSRTGDGMPELRAAMVRLIEER 215 KHPAA+PE+LVTSSRTG GMPELRAAM++LI ER Sbjct: 181 RKHPAAYPELLVTSSRTGAGMPELRAAMIKLIAER 215 >ref|ZP_08627470.1| GTP-binding protein EngB [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10096.1| GTP-binding protein EngB [Bradyrhizobiaceae bacterium SG-6C] Length = 221 Score = 364 bits (934), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 178/220 (80%), Positives = 192/220 (87%), Gaps = 5/220 (2%) Query: 1 MSTEHDAALIEQGRKLFAGDWRFIWASPSIETLPPMAGLEVAFAGRSNVGKSSLINALTG 60 M+ DA LIE GRK+FAGDW+FIWASPSIETLPPM G+EVAFAGRSNVGKSSLINALTG Sbjct: 1 MTDNTDAELIEAGRKIFAGDWQFIWASPSIETLPPMKGVEVAFAGRSNVGKSSLINALTG 60 Query: 61 RSNLARTSHTPGRTQELIFFEGP-----EKAGFRLVDMPGYGYASAPKTKVASWTALIHK 115 R+ LARTSHTPGRTQELIFF+GP + AG RLVDMPGYGYASAPK+++ASWT LIHK Sbjct: 61 RNGLARTSHTPGRTQELIFFDGPTPADGKDAGLRLVDMPGYGYASAPKSQIASWTTLIHK 120 Query: 116 FLLGRATLARVYVLIDARHGIKDVDLDVLKTLDKSAVSYQVVLTKADQVKAGELKTVIAD 175 FL GRA LARVYVLIDARHG KDVD DVLKTLD+SAVSYQVVLTKADQVK EL+ IA Sbjct: 121 FLQGRANLARVYVLIDARHGFKDVDKDVLKTLDRSAVSYQVVLTKADQVKKSELENTIAA 180 Query: 176 TSATLAKHPAAFPEVLVTSSRTGDGMPELRAAMVRLIEER 215 T A L KHPAAFPEVLVTSSRTGDGMPELRAAM+RL+ ER Sbjct: 181 TKAALVKHPAAFPEVLVTSSRTGDGMPELRAAMIRLLRER 220 >ref|YP_779583.1| ribosome biogenesis GTP-binding protein YsxC [Rhodopseudomonas palustris BisA53] sp|Q07TY1.1|ENGB_RHOP5 RecName: Full=Probable GTP-binding protein EngB gb|ABJ04603.1| GTP-binding protein [Rhodopseudomonas palustris BisA53] Length = 216 Score = 357 bits (916), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 171/215 (79%), Positives = 189/215 (87%) Query: 1 MSTEHDAALIEQGRKLFAGDWRFIWASPSIETLPPMAGLEVAFAGRSNVGKSSLINALTG 60 M+ E D ALIE+ RKLFAGDW+FIWASPS+ETLPPM GLEVAFAGRSNVGKSSLINALTG Sbjct: 1 MTDELDPALIERARKLFAGDWQFIWASPSVETLPPMQGLEVAFAGRSNVGKSSLINALTG 60 Query: 61 RSNLARTSHTPGRTQELIFFEGPEKAGFRLVDMPGYGYASAPKTKVASWTALIHKFLLGR 120 R+ LARTSHTPGRTQELIFFEGP AGFRLVDMPGYGYA+APKTK+ASWT LIH+FL GR Sbjct: 61 RNGLARTSHTPGRTQELIFFEGPADAGFRLVDMPGYGYAAAPKTKIASWTKLIHQFLQGR 120 Query: 121 ATLARVYVLIDARHGIKDVDLDVLKTLDKSAVSYQVVLTKADQVKAGELKTVIADTSATL 180 ATL RVYVLIDARHGIKDVD +VL TLDKSAVSYQ+VLTKADQVK EL +A T+ L Sbjct: 121 ATLVRVYVLIDARHGIKDVDNEVLTTLDKSAVSYQIVLTKADQVKPAELAERVAATTEAL 180 Query: 181 AKHPAAFPEVLVTSSRTGDGMPELRAAMVRLIEER 215 KHPAAFPE++VTSSR GMPELRAA+++L+ ER Sbjct: 181 RKHPAAFPEIVVTSSRNASGMPELRAAIIKLVAER 215 >ref|NP_774739.1| ribosome biogenesis GTP-binding protein YsxC [Bradyrhizobium japonicum USDA 110] sp|Q89BP9.1|ENGB_BRAJA RecName: Full=Probable GTP-binding protein EngB dbj|BAC53364.1| GTP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 217 Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 168/215 (78%), Positives = 188/215 (87%) Query: 1 MSTEHDAALIEQGRKLFAGDWRFIWASPSIETLPPMAGLEVAFAGRSNVGKSSLINALTG 60 M+ + DA LIE GRKLFA DW+FIWASPSI+TLPPM G+E+AFAGRSNVGKSSLINALTG Sbjct: 1 MTDDKDAKLIEAGRKLFARDWQFIWASPSIQTLPPMDGVEIAFAGRSNVGKSSLINALTG 60 Query: 61 RSNLARTSHTPGRTQELIFFEGPEKAGFRLVDMPGYGYASAPKTKVASWTALIHKFLLGR 120 R+ LARTSHTPGRTQELIFFE P K RLVDMPGYGYA APK++VASWT LIHKFLLGR Sbjct: 61 RNALARTSHTPGRTQELIFFEVPGKKDLRLVDMPGYGYAKAPKSQVASWTELIHKFLLGR 120 Query: 121 ATLARVYVLIDARHGIKDVDLDVLKTLDKSAVSYQVVLTKADQVKAGELKTVIADTSATL 180 A+LARVYVLIDARHG+KDVDL++L TLD+SAVSYQ+VLTKADQVK EL + IA+T A L Sbjct: 121 ASLARVYVLIDARHGLKDVDLEILGTLDRSAVSYQIVLTKADQVKPSELASRIAETEAAL 180 Query: 181 AKHPAAFPEVLVTSSRTGDGMPELRAAMVRLIEER 215 AKHPAAFP VL TSSR+ GM ELRAAM +L+EER Sbjct: 181 AKHPAAFPNVLATSSRSATGMAELRAAMAKLLEER 215 >ref|YP_578888.1| ribosome biogenesis GTP-binding protein YsxC [Nitrobacter hamburgensis X14] sp|Q1QH69.1|ENGB_NITHX RecName: Full=Probable GTP-binding protein EngB gb|ABE64428.1| GTP-binding protein [Nitrobacter hamburgensis X14] Length = 217 Score = 348 bits (892), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 170/217 (78%), Positives = 190/217 (87%) Query: 1 MSTEHDAALIEQGRKLFAGDWRFIWASPSIETLPPMAGLEVAFAGRSNVGKSSLINALTG 60 M+T DA LIE+GRKLFAGDW+FIWASPSIETLPPMAG+EVAFAGRSNVGKSSLINALTG Sbjct: 1 MTTGADADLIERGRKLFAGDWQFIWASPSIETLPPMAGVEVAFAGRSNVGKSSLINALTG 60 Query: 61 RSNLARTSHTPGRTQELIFFEGPEKAGFRLVDMPGYGYASAPKTKVASWTALIHKFLLGR 120 R LARTS TPGRTQELIFFEGP+ A RLVDMPGYG+ASAPK ++ASWT+LIHKFLLGR Sbjct: 61 RGTLARTSRTPGRTQELIFFEGPKDADVRLVDMPGYGFASAPKARIASWTSLIHKFLLGR 120 Query: 121 ATLARVYVLIDARHGIKDVDLDVLKTLDKSAVSYQVVLTKADQVKAGELKTVIADTSATL 180 A+LARVYVLID+RHGIKD+D +L TLD+SAVSYQ+VLTKAD+VKA E+ T L Sbjct: 121 ASLARVYVLIDSRHGIKDIDQAILTTLDRSAVSYQIVLTKADEVKATEMAERTEATRTLL 180 Query: 181 AKHPAAFPEVLVTSSRTGDGMPELRAAMVRLIEERRR 217 AKHPAAFP+VLVTSSRTG G+PELRAAM RLI E +R Sbjct: 181 AKHPAAFPDVLVTSSRTGYGVPELRAAMARLIGEHQR 217