BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0093.p (348 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774742.1| hypothetical protein blr8102 [Bradyrhizobium ja... 584 e-165 ref|YP_530703.1| hypothetical protein RPC_0813 [Rhodopseudomonas... 551 e-155 ref|YP_001202940.1| hypothetical protein BRADO0777 [Bradyrhizobi... 535 e-150 ref|YP_779586.1| peptidoglycan binding domain-containing protein... 534 e-150 ref|YP_001243100.1| hypothetical protein BBta_7330 [Bradyrhizobi... 533 e-149 >ref|NP_774742.1| hypothetical protein blr8102 [Bradyrhizobium japonicum USDA 110] dbj|BAC53367.1| blr8102 [Bradyrhizobium japonicum USDA 110] Length = 390 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 279/340 (82%), Positives = 296/340 (87%) Query: 9 RIPRRSPAARLAMALPAALVSFLFSSAPAHADLKLCNRMSYVIEAAIGIDDKAATATRGW 68 R RRS R M LPAA VSF+FSSAPA ADLK+CNRMSYV+EAAIGIDDKAATATRGW Sbjct: 51 RRHRRSVVTRFLMTLPAAAVSFVFSSAPAFADLKICNRMSYVVEAAIGIDDKAATATRGW 110 Query: 69 FRIDPATCRVVVQGALTADRVLLNARALGVYGASPIPQNGTDTLCVAQDNFVIAAARQCR 128 FRIDPATCRVVVQG LTADR+LLNARALGVYGASPIPQNG D LCVAQDNFVIAAARQCR Sbjct: 111 FRIDPATCRVVVQGTLTADRILLNARALGVYGASPIPQNGNDMLCVAQDNFVIAAARQCR 170 Query: 129 SGQMPAQFTQITPTKTDDGNLVAYLAEDSEYDDEQARLAGIQRLLVIAGYDAAPIDGVDG 188 SGQ FTQ+TPT+ DDGNLV YLAEDSEYDDEQARLAGIQRLLVI GYD IDGVDG Sbjct: 171 SGQTQVPFTQVTPTQGDDGNLVTYLAEDSEYDDEQARLAGIQRLLVIIGYDVGAIDGVDG 230 Query: 189 PKTQSALSAFLKSRGLAGDIVQSPNFFATMIDAVQKPSPSGLTWCNDTPHKVMAAVATDD 248 PKTQ+AL+AFLKSRGL D V SPNFF TM+DA Q PSPSGLTWCNDTPHKVMAA+ATDD Sbjct: 231 PKTQAALAAFLKSRGLPSDAVSSPNFFKTMVDATQTPSPSGLTWCNDTPHKVMAAIATDD 290 Query: 249 GKVVTSRGWYRIDPGKCLHPDVSGTPKQIYSFAEAVDNDNRAIRIKDKPLNWGGGVQLCT 308 GK VTSRGWYRIDPGKCLHPDVSG PKQI+SFAEAVD DNRA+++KDKPLNWGG QLCT Sbjct: 291 GKSVTSRGWYRIDPGKCLHPDVSGQPKQIFSFAEAVDADNRAVKLKDKPLNWGGEKQLCT 350 Query: 309 RESKFEINEQGDCATRGLAALGFTTVDMTSGGKTLRFAMP 348 RE+KFE EQ DC RG AA GF VDM+SGG+TLRFAMP Sbjct: 351 RETKFETVEQTDCGARGFAATGFGAVDMSSGGRTLRFAMP 390 >ref|YP_530703.1| hypothetical protein RPC_0813 [Rhodopseudomonas palustris BisB18] gb|ABD86384.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 347 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/333 (78%), Positives = 293/333 (87%), Gaps = 5/333 (1%) Query: 16 AARLAMALPAALVSFLFSSAPAHADLKLCNRMSYVIEAAIGIDDKAATATRGWFRIDPAT 75 A R +AL A L + PA+ADLKLCNRMSYV+EAAIGIDDKA+TA+RGWFRIDPA Sbjct: 20 ALRFGLALLA-----LSAITPAYADLKLCNRMSYVVEAAIGIDDKASTASRGWFRIDPAQ 74 Query: 76 CRVVVQGALTADRVLLNARALGVYGASPIPQNGTDTLCVAQDNFVIAAARQCRSGQMPAQ 135 CRVVVQG LTADR+LL+ARALGVYGASP+PQNG+D LC+A DNFVIAAARQCRSGQ A Sbjct: 75 CRVVVQGTLTADRILLHARALGVYGASPVPQNGSDRLCIAPDNFVIAAARQCRSGQTAAP 134 Query: 136 FTQITPTKTDDGNLVAYLAEDSEYDDEQARLAGIQRLLVIAGYDAAPIDGVDGPKTQSAL 195 FT+I PT TDDGNLVAYLAEDSEYDDEQA+LAGIQRLLVIAGYDAAPIDGVDGPKTQ+AL Sbjct: 135 FTEIKPTATDDGNLVAYLAEDSEYDDEQAKLAGIQRLLVIAGYDAAPIDGVDGPKTQAAL 194 Query: 196 SAFLKSRGLAGDIVQSPNFFATMIDAVQKPSPSGLTWCNDTPHKVMAAVATDDGKVVTSR 255 +AFLKSRGLA D+VQ+PN F MI AV+ PS +GLTWCNDTPHK+MAAV +DDGK VTSR Sbjct: 195 AAFLKSRGLAADVVQAPNLFDAMIKAVEAPSSTGLTWCNDTPHKIMAAVGSDDGKAVTSR 254 Query: 256 GWYRIDPGKCLHPDVSGTPKQIYSFAEAVDNDNRAIRIKDKPLNWGGGVQLCTRESKFEI 315 GWYRIDPGKCLHPDVSG PKQ+YSFAEAV+ DNRA++IKDKPL+WGGGV LCTR+SKFEI Sbjct: 255 GWYRIDPGKCLHPDVSGQPKQLYSFAEAVNADNRAVKIKDKPLSWGGGVMLCTRDSKFEI 314 Query: 316 NEQGDCATRGLAALGFTTVDMTSGGKTLRFAMP 348 N+Q DCA RG GFT+VD++SGGKTLRF +P Sbjct: 315 NDQHDCAARGFNRTGFTSVDLSSGGKTLRFTLP 347 >ref|YP_001202940.1| hypothetical protein BRADO0777 [Bradyrhizobium sp. ORS 278] emb|CAL74702.1| conserved hypothetical protein; Putative peptidoglycan-binding domain-containing protein [Bradyrhizobium sp. ORS 278] Length = 355 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 248/314 (78%), Positives = 281/314 (89%), Gaps = 1/314 (0%) Query: 36 PAHADLKLCNRMSYVIEAAIGIDDKAATATRGWFRIDPATCRVVVQGALTADRVLLNARA 95 PA ADLKLCNRMSYV+EAAIGID+KAATATRGWFR+DPATCRVV+QG +TADR+LL+ARA Sbjct: 42 PARADLKLCNRMSYVVEAAIGIDEKAATATRGWFRLDPATCRVVLQGTMTADRILLHARA 101 Query: 96 LGVYGASPIPQNGTDTLCVA-QDNFVIAAARQCRSGQMPAQFTQITPTKTDDGNLVAYLA 154 L +YGASP+ +NG D LCVA DNFVIAAARQCR+GQ PA FTQ+TPTKTDDG L+AYLA Sbjct: 102 LSLYGASPMAENGNDQLCVAASDNFVIAAARQCRTGQTPAAFTQVTPTKTDDGTLIAYLA 161 Query: 155 EDSEYDDEQARLAGIQRLLVIAGYDAAPIDGVDGPKTQSALSAFLKSRGLAGDIVQSPNF 214 E +EYDDEQARLAGIQRLL IAGYDA+PIDGVDGPKTQ+AL+AFLKSRGLA D+V P+F Sbjct: 162 ESAEYDDEQARLAGIQRLLGIAGYDASPIDGVDGPKTQAALAAFLKSRGLASDVVSQPSF 221 Query: 215 FATMIDAVQKPSPSGLTWCNDTPHKVMAAVATDDGKVVTSRGWYRIDPGKCLHPDVSGTP 274 FATM+DAVQ PSP GLTWCNDTPHKVMAAV TDDG+ V SRGWYRID GKCLHPD++G P Sbjct: 222 FATMVDAVQTPSPVGLTWCNDTPHKVMAAVGTDDGRTVVSRGWYRIDAGKCLHPDITGQP 281 Query: 275 KQIYSFAEAVDNDNRAIRIKDKPLNWGGGVQLCTRESKFEINEQGDCATRGLAALGFTTV 334 K++YSFAEAVD+DNR I++K+KPLNWGG VQLCTRE+KFE EQGDC +RG A GFT V Sbjct: 282 KKVYSFAEAVDDDNRTIKLKNKPLNWGGLVQLCTRENKFETTEQGDCPSRGFTATGFTAV 341 Query: 335 DMTSGGKTLRFAMP 348 D+T GGKTLRFA+P Sbjct: 342 DITRGGKTLRFALP 355 >ref|YP_779586.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisA53] gb|ABJ04606.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris BisA53] Length = 333 Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust. Identities = 253/333 (75%), Positives = 289/333 (86%), Gaps = 3/333 (0%) Query: 19 LAMALPAALVSFLFS---SAPAHADLKLCNRMSYVIEAAIGIDDKAATATRGWFRIDPAT 75 + +AL A ++ L + + PAHADLKLCNRMSYV+EAAIGIDDKA+TATRGWFR+DPA Sbjct: 1 MRLALRKASLAVLLALGITTPAHADLKLCNRMSYVVEAAIGIDDKASTATRGWFRLDPAQ 60 Query: 76 CRVVVQGALTADRVLLNARALGVYGASPIPQNGTDTLCVAQDNFVIAAARQCRSGQMPAQ 135 CRVV QG L+ADR+LL+ARALGVYGASP+PQ+GTD LC+A DNFVIAAARQCR GQ A Sbjct: 61 CRVVAQGTLSADRLLLHARALGVYGASPVPQDGTDRLCIAPDNFVIAAARQCRGGQTQAP 120 Query: 136 FTQITPTKTDDGNLVAYLAEDSEYDDEQARLAGIQRLLVIAGYDAAPIDGVDGPKTQSAL 195 FT+I P+ T+DG+ VAYLAE +EYDDEQARLAGIQRLLVIAGYDAAPIDGVDGPKTQ+AL Sbjct: 121 FTEIKPSPTEDGHQVAYLAEGAEYDDEQARLAGIQRLLVIAGYDAAPIDGVDGPKTQAAL 180 Query: 196 SAFLKSRGLAGDIVQSPNFFATMIDAVQKPSPSGLTWCNDTPHKVMAAVATDDGKVVTSR 255 +AFLKSR L+ D+V S N F TMI AVQ PSP+GLTWCNDTPHK+MAAVA+DDGK VTSR Sbjct: 181 AAFLKSRSLSADVVPSQNLFDTMIKAVQAPSPTGLTWCNDTPHKIMAAVASDDGKTVTSR 240 Query: 256 GWYRIDPGKCLHPDVSGTPKQIYSFAEAVDNDNRAIRIKDKPLNWGGGVQLCTRESKFEI 315 GWYR+DPGKCLHPDVSG P+QIYSFAEAVD +NRA+++KDKPLNWGG V LCTRESKFEI Sbjct: 241 GWYRVDPGKCLHPDVSGQPRQIYSFAEAVDANNRALKLKDKPLNWGGNVTLCTRESKFEI 300 Query: 316 NEQGDCATRGLAALGFTTVDMTSGGKTLRFAMP 348 N+QGDC RGL GF VD++SGGKTLRFA P Sbjct: 301 NDQGDCVARGLNPTGFAPVDISSGGKTLRFAAP 333 >ref|YP_001243100.1| hypothetical protein BBta_7330 [Bradyrhizobium sp. BTAi1] gb|ABQ39194.1| hypothetical protein BBta_7330 [Bradyrhizobium sp. BTAi1] Length = 372 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 251/332 (75%), Positives = 291/332 (87%), Gaps = 2/332 (0%) Query: 18 RLAMALPAALVSFLFSSAPAHADLKLCNRMSYVIEAAIGIDDKAATATRGWFRIDPATCR 77 R+A+AL A ++ L + PA ADLKLCNRMSYV+EAAIGID+KAATATRGWFR+DPATCR Sbjct: 42 RVALAL-AVILPLLTFTTPARADLKLCNRMSYVVEAAIGIDEKAATATRGWFRLDPATCR 100 Query: 78 VVVQGALTADRVLLNARALGVYGASPIPQNGTDTLCVAQ-DNFVIAAARQCRSGQMPAQF 136 VV+QGA+TA+R+LL+ARAL +YGASPI NG D LCVA DNFVIAAARQCR+GQ PA F Sbjct: 101 VVLQGAMTAERILLHARALSLYGASPIAANGNDQLCVATTDNFVIAAARQCRAGQTPAAF 160 Query: 137 TQITPTKTDDGNLVAYLAEDSEYDDEQARLAGIQRLLVIAGYDAAPIDGVDGPKTQSALS 196 TQ+TPTK+DDG+L AYLAE +EYDDEQARLAGIQRLL IAGYD +PIDGVDGPKTQ+AL+ Sbjct: 161 TQVTPTKSDDGSLTAYLAESAEYDDEQARLAGIQRLLGIAGYDVSPIDGVDGPKTQAALA 220 Query: 197 AFLKSRGLAGDIVQSPNFFATMIDAVQKPSPSGLTWCNDTPHKVMAAVATDDGKVVTSRG 256 AFLKSRGL+ DIV FFATM+DAVQ PSP+GLTWCNDTPHKVMAAVATDDG+ V SRG Sbjct: 221 AFLKSRGLSSDIVSQSTFFATMVDAVQTPSPTGLTWCNDTPHKVMAAVATDDGRTVVSRG 280 Query: 257 WYRIDPGKCLHPDVSGTPKQIYSFAEAVDNDNRAIRIKDKPLNWGGGVQLCTRESKFEIN 316 WYRID GKCLHPD++G PK++YSFAEAVD++NR I++K+KPLNWGG VQLCTRE+KFE Sbjct: 281 WYRIDAGKCLHPDITGQPKKVYSFAEAVDDENRTIKLKNKPLNWGGLVQLCTRENKFETT 340 Query: 317 EQGDCATRGLAALGFTTVDMTSGGKTLRFAMP 348 EQGDC +RG A GFT VD+T GGKT+RFA+P Sbjct: 341 EQGDCPSRGFTATGFTAVDITRGGKTIRFALP 372